Wall clock time and date at job start Mon Mar 30 2020 04:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32559 * 120.40751 * 2 1 4 4 C 1.31789 * 121.02867 * 180.02562 * 3 2 1 5 5 N 1.31738 * 121.87235 * 359.71929 * 4 3 2 6 6 C 1.33018 * 120.69654 * 0.57153 * 5 4 3 7 7 N 1.38535 * 120.54562 * 179.71535 * 6 5 4 8 8 C 1.36917 * 120.00044 * 359.72252 * 7 6 5 9 9 H 1.08005 * 119.99956 * 359.72502 * 8 7 6 10 10 C 1.38855 * 120.00279 * 180.02562 * 8 7 6 11 11 N 1.31539 * 119.99557 * 359.72040 * 10 8 7 12 12 Si 1.86798 * 120.00050 * 179.72684 * 10 8 7 13 13 H 1.48498 * 109.47416 * 59.99593 * 12 10 8 14 14 H 1.48508 * 109.46609 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46903 * 299.99178 * 12 10 8 16 16 C 1.38217 * 120.40517 * 180.02562 * 2 1 3 17 17 Br 1.89101 * 120.84830 * 359.95812 * 16 2 1 18 18 H 1.08999 * 109.47399 * 269.97558 * 1 2 3 19 19 H 1.09007 * 109.47087 * 29.97268 * 1 2 3 20 20 H 1.09001 * 109.47224 * 149.97253 * 1 2 3 21 21 H 1.08002 * 119.05998 * 180.02562 * 4 3 2 22 22 H 0.96998 * 119.99578 * 179.72714 * 7 6 5 23 23 H 0.97000 * 119.99580 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1779 1.1433 0.0000 4 6 3.4957 1.1575 -0.0005 5 7 4.2034 0.0464 0.0045 6 6 3.6035 -1.1408 -0.0012 7 7 4.3509 -2.3073 -0.0019 8 6 5.7186 -2.2441 -0.0025 9 1 6.2148 -1.2848 -0.0069 10 6 6.4677 -3.4132 -0.0037 11 7 5.8632 -4.5815 0.0012 12 14 8.3336 -3.3269 -0.0122 13 1 8.8012 -2.6025 1.1968 14 1 8.8927 -4.7028 -0.0116 15 1 8.7903 -2.6071 -1.2282 16 6 2.2065 -1.1921 -0.0005 17 35 1.2970 -2.8500 -0.0001 18 1 -0.3634 -0.0004 1.0276 19 1 -0.3633 0.8903 -0.5134 20 1 -0.3634 -0.8897 -0.5143 21 1 4.0101 2.1072 -0.0001 22 1 3.9051 -3.1688 -0.0020 23 1 6.3865 -5.3983 0.0008 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260348729.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:55 Heat of formation + Delta-G solvation = 41.725145 kcal Electronic energy + Delta-G solvation = -11658.146608 eV Core-core repulsion = 9359.408781 eV Total energy + Delta-G solvation = -2298.737828 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.986 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.78918 -35.97989 -33.31931 -32.60435 -30.46673 -29.11442 -27.42932 -24.83357 -22.83262 -21.09428 -18.45926 -16.88872 -16.06017 -14.81242 -14.35707 -14.18466 -13.92852 -13.62764 -12.67645 -12.32103 -12.02976 -11.72087 -11.54624 -10.92185 -10.78915 -10.52476 -10.46213 -9.80358 -9.60446 -9.30539 -8.61702 -8.07902 -7.52854 -6.82955 -4.03738 1.84944 2.30478 2.48479 3.07473 3.10888 3.11105 3.87224 4.55424 4.59363 4.94224 5.05765 5.28809 5.78917 5.87069 5.94723 6.14114 6.43836 6.46168 7.13042 7.25464 7.57725 8.03561 8.49733 8.95741 9.02069 9.49551 10.30846 Molecular weight = 256.99amu Principal moments of inertia in cm(-1) A = 0.030000 B = 0.009180 C = 0.007056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.113231 B = 3049.225197 C = 3967.187376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.231 3.769 3 N -0.615 5.615 4 C 0.340 3.660 5 N -0.574 5.574 6 C 0.374 3.626 7 N -0.490 5.490 8 C -0.292 4.292 9 H 0.120 0.880 10 C 0.024 3.976 11 N -0.874 5.874 12 Si 0.944 3.056 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.268 1.268 16 C -0.303 4.303 17 Br -0.068 7.068 18 H 0.077 0.923 19 H 0.075 0.925 20 H 0.077 0.923 21 H 0.180 0.820 22 H 0.414 0.586 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 2.487 -0.018 7.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.088 3.912 3 N -0.343 5.343 4 C 0.047 3.953 5 N -0.302 5.302 6 C 0.122 3.878 7 N -0.094 5.094 8 C -0.423 4.423 9 H 0.137 0.863 10 C -0.182 4.182 11 N -0.509 5.509 12 Si 0.769 3.231 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.193 1.193 16 C -0.398 4.398 17 Br 0.015 6.985 18 H 0.096 0.904 19 H 0.094 0.906 20 H 0.095 0.905 21 H 0.196 0.804 22 H 0.253 0.747 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.500 2.245 -0.013 6.877 hybrid contribution 0.567 -0.911 0.010 1.073 sum -5.933 1.334 -0.002 6.081 Atomic orbital electron populations 1.20770 0.89387 1.03267 1.02958 1.20857 0.96102 0.86866 0.87362 1.68231 1.09923 1.27809 1.28335 1.24308 0.86846 0.95704 0.88439 1.67955 1.39968 0.97010 1.25310 1.17803 0.85837 0.87582 0.96565 1.41260 1.06670 1.04451 1.56987 1.20118 0.80286 0.95637 1.46293 0.86279 1.25591 1.02192 0.94369 0.96077 1.69679 1.37923 0.98044 1.45217 0.85690 0.80070 0.77717 0.79596 1.19268 1.20507 1.19270 1.22106 0.94208 0.91732 1.31721 1.96415 1.76835 1.26922 1.98369 0.90394 0.90622 0.90461 0.80381 0.74698 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.79 36.00 0.35 -1.25 14 2 C 0.23 4.54 6.82 -82.29 -0.56 3.98 14 3 N -0.61 -12.35 10.37 -10.86 -0.11 -12.46 14 4 C 0.34 6.83 12.28 -92.21 -1.13 5.70 14 5 N -0.57 -13.39 9.25 -13.77 -0.13 -13.52 14 6 C 0.37 9.01 7.46 -154.70 -1.15 7.85 14 7 N -0.49 -12.47 5.37 -10.96 -0.06 -12.53 14 8 C -0.29 -7.61 9.72 -15.05 -0.15 -7.75 14 9 H 0.12 3.11 7.11 -52.48 -0.37 2.73 14 10 C 0.02 0.61 5.50 -17.45 -0.10 0.52 14 11 N -0.87 -22.63 13.05 55.49 0.72 -21.91 14 12 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 14 13 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 14 H -0.28 -5.65 7.11 56.52 0.40 -5.25 14 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 16 C -0.30 -6.52 6.29 -39.01 -0.25 -6.76 14 17 Br -0.07 -1.26 30.54 -68.01 -2.08 -3.34 14 18 H 0.08 1.07 8.14 -51.93 -0.42 0.65 14 19 H 0.07 1.04 8.14 -51.93 -0.42 0.61 14 20 H 0.08 1.10 6.76 -51.93 -0.35 0.75 14 21 H 0.18 2.85 8.06 -52.49 -0.42 2.42 14 22 H 0.41 10.51 6.43 -40.82 -0.26 10.25 14 23 H 0.28 6.83 8.31 -40.82 -0.34 6.49 14 LS Contribution 230.27 15.07 3.47 3.47 Total: -1.00 -27.46 230.27 -7.58 -35.04 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -1.39 Total: 8.55 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.98 Total: 2.28 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.43 Total: -60.42 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 35 Polarization: -1.26 SS G_CDS: -2.08 Total: -3.34 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -27.46 -7.58 -35.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260348729.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.763 kcal (2) G-P(sol) polarization free energy of solvation -27.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds