Wall clock time and date at job start Mon Mar 30 2020 05:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86800 * 119.99960 * 2 1 4 4 H 1.48499 * 109.47073 * 240.00269 * 3 2 1 5 5 H 1.48497 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47191 * 120.00382 * 3 2 1 7 7 C 1.40337 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.39805 * 120.00392 * 359.97438 * 7 2 1 10 10 N 1.32813 * 125.80225 * 179.97438 * 9 7 2 11 11 C 1.33060 * 108.65183 * 180.02562 * 10 9 7 12 12 C 1.50695 * 126.01137 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.01079 * 333.64727 * 12 11 10 14 14 C 1.53883 * 110.02890 * 212.21476 * 12 11 10 15 15 C 1.54158 * 108.70330 * 193.53164 * 14 12 11 16 16 S 1.82918 * 105.08927 * 27.90770 * 15 14 12 17 17 O 1.42096 * 109.35448 * 244.47814 * 16 15 14 18 18 O 1.42094 * 109.35339 * 111.27591 * 16 15 14 19 19 C 1.55054 * 110.02626 * 95.02382 * 12 11 10 20 20 C 1.35940 * 107.97854 * 0.02562 * 11 10 9 21 21 O 1.34604 * 107.36177 * 0.02562 * 20 11 10 22 22 H 0.97000 * 120.00275 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.64447 * 313.38109 * 14 12 11 24 24 H 1.08998 * 109.64273 * 73.67577 * 14 12 11 25 25 H 1.09009 * 110.31926 * 269.00501 * 15 14 12 26 26 H 1.09000 * 110.40851 * 146.85716 * 15 14 12 27 27 H 1.08995 * 110.79005 * 279.99567 * 19 12 11 28 28 H 1.08999 * 110.78888 * 43.45857 * 19 12 11 29 29 H 1.07998 * 126.32299 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0939 1.6964 -1.2125 5 1 1.2752 2.7464 0.0006 6 1 3.0940 1.6964 1.2124 7 6 2.0079 -1.2154 -0.0005 8 1 3.0879 -1.2154 -0.0010 9 6 1.3090 -2.4261 -0.0005 10 7 1.8534 -3.6376 -0.0015 11 6 0.8779 -4.5425 -0.0017 12 6 1.0575 -6.0387 -0.0033 13 1 2.0128 -6.2993 -0.4588 14 6 -0.0948 -6.7070 -0.7739 15 6 -0.0781 -8.2192 -0.4747 16 16 0.6643 -8.3669 1.1905 17 8 1.8981 -9.0656 1.0958 18 8 -0.3274 -8.7994 2.1116 19 6 0.9950 -6.5825 1.4474 20 6 -0.3091 -3.8800 -0.0014 21 8 -0.0336 -2.5624 -0.0016 22 1 -0.4850 0.8400 0.0004 23 1 -1.0455 -6.2806 -0.4538 24 1 0.0364 -6.5435 -1.8435 25 1 0.5330 -8.7437 -1.2094 26 1 -1.0926 -8.6176 -0.4734 27 1 1.9470 -6.4349 1.9572 28 1 0.1815 -6.1142 2.0015 29 1 -1.2917 -4.3280 -0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260480299.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:01 Heat of formation + Delta-G solvation = -96.972524 kcal Electronic energy + Delta-G solvation = -16836.765333 eV Core-core repulsion = 13852.024858 eV Total energy + Delta-G solvation = -2984.740475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.055 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.03756 -38.13867 -37.92352 -37.03957 -35.66907 -34.44695 -31.52137 -30.36516 -27.82213 -25.80679 -23.65426 -22.41051 -21.10316 -19.79582 -19.21708 -17.76542 -17.53610 -17.23674 -16.65907 -16.52528 -16.40711 -15.46969 -15.27941 -15.01524 -14.74085 -13.87541 -13.47054 -13.32128 -13.21748 -13.11050 -12.99468 -12.97395 -12.88385 -12.68800 -12.03573 -11.77013 -11.73957 -11.55134 -11.35538 -11.04652 -10.62688 -9.41113 -8.84888 -6.74765 -0.88817 1.10273 1.39159 1.49922 1.54755 1.65557 2.16434 2.17536 2.67157 2.94299 3.09243 3.18554 3.45491 3.61193 3.80542 3.97005 4.05038 4.19882 4.50201 4.69702 4.76005 4.85176 4.94540 5.04854 5.09759 5.20959 5.77227 5.94794 6.12811 6.52799 6.60907 7.80967 8.19587 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.057033 B = 0.004624 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.828999 B = 6053.510186 C = 6202.202895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.029 3.971 3 Si 1.012 2.988 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.255 1.255 7 C -0.465 4.465 8 H 0.110 0.890 9 C 0.313 3.687 10 N -0.640 5.640 11 C 0.020 3.980 12 C -0.004 4.004 13 H 0.100 0.900 14 C -0.107 4.107 15 C -0.557 4.557 16 S 2.410 3.590 17 O -0.975 6.975 18 O -0.973 6.973 19 C -0.577 4.577 20 C -0.223 4.223 21 O -0.213 6.213 22 H 0.298 0.702 23 H 0.098 0.902 24 H 0.106 0.894 25 H 0.162 0.838 26 H 0.170 0.830 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 -8.796 -2.003 9.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.190 4.190 3 Si 0.829 3.171 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.179 1.179 7 C -0.500 4.500 8 H 0.128 0.872 9 C 0.129 3.871 10 N -0.375 5.375 11 C -0.105 4.105 12 C -0.024 4.024 13 H 0.119 0.881 14 C -0.146 4.146 15 C -0.690 4.690 16 S 2.597 3.403 17 O -0.972 6.972 18 O -0.971 6.971 19 C -0.706 4.706 20 C -0.295 4.295 21 O -0.105 6.105 22 H 0.109 0.891 23 H 0.117 0.883 24 H 0.124 0.876 25 H 0.180 0.820 26 H 0.188 0.812 27 H 0.149 0.851 28 H 0.157 0.843 29 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.140 -9.596 -1.384 9.929 hybrid contribution -0.583 1.532 -0.256 1.660 sum -2.723 -8.064 -1.640 8.668 Atomic orbital electron populations 1.69743 1.09306 1.31941 1.32677 1.27162 0.95893 1.05362 0.90589 0.84808 0.78315 0.73359 0.80578 1.17709 1.18507 1.17899 1.18780 0.95232 0.86965 1.49013 0.87223 1.22571 0.77376 0.94346 0.92816 1.70770 1.32935 0.98575 1.35227 1.21394 0.89504 0.95804 1.03804 1.20085 1.01659 0.88275 0.92401 0.88145 1.22001 0.98830 0.90260 1.03497 1.30296 1.15737 1.03449 1.19474 1.08320 0.74894 0.77349 0.79704 1.93557 1.45133 1.70979 1.87505 1.93551 1.60633 1.80285 1.62589 1.30733 1.12334 1.23759 1.03824 1.24892 1.00813 0.81438 1.22392 1.84818 1.26513 1.25970 1.73183 0.89119 0.88339 0.87600 0.81985 0.81180 0.85073 0.84322 0.76919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.98 11.98 21.89 0.26 -41.72 15 2 C 0.03 1.45 5.50 85.38 0.47 1.92 15 3 Si 1.01 36.37 29.56 68.60 2.03 38.40 15 4 H -0.25 -8.74 7.11 99.48 0.71 -8.03 15 5 H -0.26 -8.69 7.11 99.48 0.71 -7.98 15 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 15 7 C -0.47 -25.53 9.45 23.16 0.22 -25.31 15 8 H 0.11 5.76 7.85 -2.91 -0.02 5.73 15 9 C 0.31 17.97 7.66 84.92 0.65 18.62 15 10 N -0.64 -34.43 11.34 -297.40 -3.37 -37.80 15 11 C 0.02 0.87 6.10 41.84 0.26 1.13 15 12 C 0.00 -0.12 3.09 -10.54 -0.03 -0.15 15 13 H 0.10 2.99 8.14 -2.39 -0.02 2.97 15 14 C -0.11 -2.17 5.54 31.28 0.17 -2.00 15 15 C -0.56 -7.85 7.26 72.37 0.53 -7.33 15 16 S 2.41 53.38 6.11 -56.49 -0.34 53.04 15 17 O -0.97 -28.31 18.14 -127.49 -2.31 -30.62 15 18 O -0.97 -27.35 18.14 -127.49 -2.31 -29.66 15 19 C -0.58 -15.39 6.66 72.69 0.48 -14.91 15 20 C -0.22 -9.96 11.33 67.29 0.76 -9.20 15 21 O -0.21 -11.84 9.06 -11.92 -0.11 -11.95 15 22 H 0.30 13.67 8.29 -92.71 -0.77 12.90 15 23 H 0.10 1.81 6.67 -2.39 -0.02 1.80 15 24 H 0.11 2.00 8.14 -2.39 -0.02 1.98 15 25 H 0.16 1.62 8.14 -2.38 -0.02 1.60 15 26 H 0.17 1.48 8.14 -2.39 -0.02 1.46 15 27 H 0.13 3.63 8.14 -2.39 -0.02 3.61 15 28 H 0.14 3.62 8.10 -2.39 -0.02 3.60 15 29 H 0.21 7.28 7.06 -2.91 -0.02 7.26 15 Total: -1.00 -77.33 266.94 -1.48 -78.81 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 1.18 Total: 18.73 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 3.51 Total: -37.22 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -3.11 Total: -79.52 kcal Atomic # 8 Polarization: -67.50 SS G_CDS: -4.73 Total: -72.23 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Atomic # 16 Polarization: 53.38 SS G_CDS: -0.34 Total: 53.04 kcal Total: -77.33 -1.48 -78.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260480299.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.165 kcal (2) G-P(sol) polarization free energy of solvation -77.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds