Wall clock time and date at job start Mon Mar 30 2020 05:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30623 * 1 3 3 Si 1.86805 * 119.99845 * 2 1 4 4 H 1.48496 * 109.46989 * 274.98196 * 3 2 1 5 5 H 1.48498 * 109.47144 * 34.98306 * 3 2 1 6 6 H 1.48501 * 109.46875 * 154.98362 * 3 2 1 7 7 C 1.40334 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00224 * 186.03514 * 7 2 1 9 9 C 1.39804 * 120.00016 * 6.03970 * 7 2 1 10 10 N 1.32815 * 125.79907 * 174.52782 * 9 7 2 11 11 C 1.33066 * 108.64799 * 180.12973 * 10 9 7 12 12 C 1.50696 * 126.00914 * 179.86438 * 11 10 9 13 13 H 1.09002 * 110.05529 * 333.29210 * 12 11 10 14 14 C 1.53875 * 110.02442 * 94.69628 * 12 11 10 15 15 C 1.54174 * 108.59582 * 166.40677 * 14 12 11 16 16 S 1.82914 * 105.08373 * 332.15458 * 15 14 12 17 17 O 1.42102 * 109.35052 * 115.51985 * 16 15 14 18 18 O 1.42094 * 109.35392 * 248.59009 * 16 15 14 19 19 C 1.54737 * 109.87363 * 211.98064 * 12 11 10 20 20 C 1.35932 * 107.98007 * 359.60963 * 11 10 9 21 21 O 1.34595 * 107.36010 * 0.23802 * 20 11 10 22 22 H 0.97002 * 120.00219 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.64922 * 46.61768 * 14 12 11 24 24 H 1.08999 * 109.64627 * 286.18904 * 14 12 11 25 25 H 1.08999 * 110.31816 * 91.05703 * 15 14 12 26 26 H 1.08998 * 110.31903 * 213.25098 * 15 14 12 27 27 H 1.09002 * 110.81188 * 79.97187 * 19 12 11 28 28 H 1.08994 * 110.81986 * 316.47396 * 19 12 11 29 29 H 1.07995 * 126.32344 * 180.21803 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3824 2.1072 -1.3948 5 1 1.4943 2.6200 0.8027 6 1 3.5865 1.4121 0.5921 7 6 2.0080 -1.2153 0.0005 8 1 3.0835 -1.2178 0.0989 9 6 1.3148 -2.4228 -0.1263 10 7 1.8651 -3.6260 -0.2423 11 6 0.8939 -4.5300 -0.3439 12 6 1.0807 -6.0176 -0.4954 13 1 2.0386 -6.2276 -0.9712 14 6 1.0158 -6.6998 0.8823 15 6 0.8648 -8.2196 0.6718 16 16 0.0153 -8.3950 -0.9385 17 8 0.8814 -9.0436 -1.8597 18 8 -1.2968 -8.8977 -0.7265 19 6 -0.0722 -6.6091 -1.3413 20 6 -0.2962 -3.8762 -0.2814 21 8 -0.0271 -2.5644 -0.1458 22 1 -0.4850 0.8400 0.0004 23 1 0.1593 -6.3201 1.4394 24 1 1.9325 -6.4958 1.4358 25 1 1.8446 -8.6961 0.6368 26 1 0.2602 -8.6538 1.4681 27 1 0.1029 -6.4432 -2.4043 28 1 -1.0310 -6.1902 -1.0361 29 1 -1.2766 -4.3261 -0.3315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260480301.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:03 Heat of formation + Delta-G solvation = -96.711072 kcal Electronic energy + Delta-G solvation = -16837.387007 eV Core-core repulsion = 13852.657870 eV Total energy + Delta-G solvation = -2984.729137 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.055 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.04513 -38.13982 -37.93121 -37.04078 -35.67226 -34.42682 -31.75052 -30.25545 -27.43557 -26.25995 -23.37411 -22.58477 -21.11169 -19.77747 -19.23286 -17.77784 -17.61735 -17.21454 -16.61317 -16.50753 -16.36775 -15.60880 -15.22245 -14.96041 -14.66733 -14.08878 -13.45631 -13.29191 -13.17786 -13.09132 -13.03238 -12.97666 -12.91055 -12.63178 -11.99740 -11.86176 -11.73755 -11.50518 -11.31585 -11.09606 -10.65033 -9.41361 -8.85320 -6.74658 -0.89036 1.09468 1.39559 1.51594 1.57648 1.61751 2.16559 2.17259 2.65560 2.89934 3.11601 3.17647 3.46023 3.57827 3.85292 3.92749 4.02766 4.19734 4.53589 4.69257 4.74783 4.83588 4.89340 5.05304 5.13160 5.18976 5.77297 5.93312 6.12665 6.52848 6.61075 7.79764 8.19458 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.062259 B = 0.004572 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.629089 B = 6122.332915 C = 6257.487325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.029 3.971 3 Si 1.012 2.988 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.251 1.251 7 C -0.463 4.463 8 H 0.111 0.889 9 C 0.313 3.687 10 N -0.636 5.636 11 C 0.022 3.978 12 C -0.003 4.003 13 H 0.102 0.898 14 C -0.104 4.104 15 C -0.562 4.562 16 S 2.414 3.586 17 O -0.973 6.973 18 O -0.971 6.971 19 C -0.578 4.578 20 C -0.225 4.225 21 O -0.213 6.213 22 H 0.298 0.702 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.160 0.840 26 H 0.166 0.834 27 H 0.144 0.856 28 H 0.148 0.852 29 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 -8.724 1.767 8.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.191 4.191 3 Si 0.830 3.170 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.174 1.174 7 C -0.498 4.498 8 H 0.129 0.871 9 C 0.129 3.871 10 N -0.371 5.371 11 C -0.103 4.103 12 C -0.023 4.023 13 H 0.120 0.880 14 C -0.143 4.143 15 C -0.694 4.694 16 S 2.601 3.399 17 O -0.970 6.970 18 O -0.969 6.969 19 C -0.708 4.708 20 C -0.298 4.298 21 O -0.106 6.106 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.113 0.887 25 H 0.178 0.822 26 H 0.184 0.816 27 H 0.162 0.838 28 H 0.166 0.834 29 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.075 -9.541 1.255 9.624 hybrid contribution -0.452 1.535 0.239 1.618 sum -0.527 -8.006 1.493 8.161 Atomic orbital electron populations 1.69761 1.09380 1.31870 1.32687 1.27180 0.95859 1.05433 0.90581 0.84739 0.78843 0.73672 0.79747 1.18330 1.18487 1.17384 1.18814 0.95667 0.87020 1.48336 0.87074 1.22606 0.77260 0.94412 0.92831 1.70781 1.32741 0.98805 1.34756 1.21389 0.89447 0.95899 1.03577 1.19996 0.98314 0.88153 0.95880 0.87973 1.21930 1.06061 0.90208 0.96073 1.30339 1.15860 1.03073 1.20135 1.08210 0.74987 0.77643 0.79099 1.93562 1.67828 1.73135 1.62481 1.93556 1.38635 1.78318 1.86350 1.30690 1.06965 1.23249 1.09865 1.24807 1.00766 0.81916 1.22273 1.84814 1.26778 1.26297 1.72694 0.89156 0.89241 0.88750 0.82247 0.81600 0.83827 0.83429 0.77466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.02 12.00 21.89 0.26 -41.75 15 2 C 0.03 1.42 5.49 85.38 0.47 1.89 15 3 Si 1.01 36.21 29.57 68.60 2.03 38.24 15 4 H -0.26 -8.91 7.11 99.48 0.71 -8.20 15 5 H -0.26 -8.70 7.11 99.48 0.71 -7.99 15 6 H -0.25 -8.61 7.11 99.48 0.71 -7.91 15 7 C -0.46 -25.24 9.45 23.16 0.22 -25.02 15 8 H 0.11 5.78 7.86 -2.91 -0.02 5.75 15 9 C 0.31 17.86 7.65 84.92 0.65 18.51 15 10 N -0.64 -33.74 11.35 -297.40 -3.37 -37.11 15 11 C 0.02 0.96 6.08 41.83 0.25 1.22 15 12 C 0.00 -0.09 3.08 -10.65 -0.03 -0.13 15 13 H 0.10 3.02 8.14 -2.39 -0.02 3.00 15 14 C -0.10 -2.39 5.75 31.29 0.18 -2.21 15 15 C -0.56 -8.76 7.26 72.38 0.53 -8.23 15 16 S 2.41 51.50 6.10 -56.49 -0.34 51.16 15 17 O -0.97 -27.29 18.15 -127.47 -2.31 -29.60 15 18 O -0.97 -26.38 18.15 -127.47 -2.31 -28.69 15 19 C -0.58 -13.86 6.46 72.57 0.47 -13.39 15 20 C -0.23 -10.23 11.33 67.28 0.76 -9.47 15 21 O -0.21 -11.95 9.09 -11.79 -0.11 -12.06 15 22 H 0.30 13.63 8.29 -92.71 -0.77 12.86 15 23 H 0.09 2.02 8.09 -2.39 -0.02 2.00 15 24 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.16 1.88 8.14 -2.39 -0.02 1.86 15 26 H 0.17 1.76 8.14 -2.39 -0.02 1.74 15 27 H 0.14 3.28 8.14 -2.39 -0.02 3.26 15 28 H 0.15 3.26 6.62 -2.39 -0.02 3.24 15 29 H 0.21 7.43 7.04 -2.91 -0.02 7.41 15 Total: -1.00 -75.91 266.88 -1.49 -77.39 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 1.18 Total: 19.25 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 3.50 Total: -36.83 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -3.11 Total: -78.86 kcal Atomic # 8 Polarization: -65.61 SS G_CDS: -4.73 Total: -70.35 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Atomic # 16 Polarization: 51.50 SS G_CDS: -0.34 Total: 51.16 kcal Total: -75.91 -1.49 -77.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260480301.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.317 kcal (2) G-P(sol) polarization free energy of solvation -75.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds