Wall clock time and date at job start Mon Mar 30 2020 04:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30998 * 1 3 3 Si 1.86793 * 119.99850 * 2 1 4 4 H 1.48501 * 109.47115 * 270.00176 * 3 2 1 5 5 H 1.48505 * 109.47219 * 29.99868 * 3 2 1 6 6 H 1.48497 * 109.47294 * 150.00109 * 3 2 1 7 7 C 1.39731 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99416 * 180.02562 * 7 2 1 9 9 C 1.41258 * 120.00383 * 359.97438 * 7 2 1 10 10 C 1.38801 * 126.67559 * 359.97438 * 9 7 2 11 11 O 1.34422 * 106.50424 * 180.02562 * 10 9 7 12 12 C 1.34051 * 108.38765 * 359.97438 * 11 10 9 13 13 C 1.50709 * 125.07800 * 179.97438 * 12 11 10 14 14 H 1.09000 * 110.36140 * 192.85873 * 13 12 11 15 15 C 1.54165 * 110.31942 * 70.68514 * 13 12 11 16 16 C 1.54046 * 108.84991 * 213.30890 * 15 13 12 17 17 C 1.55047 * 106.54086 * 46.89717 * 16 15 13 18 18 S 1.82915 * 110.31706 * 315.02290 * 13 12 11 19 19 O 1.42099 * 109.35373 * 7.62777 * 18 13 12 20 20 O 1.42097 * 109.47677 * 234.46392 * 18 13 12 21 21 N 1.29914 * 109.84761 * 0.24308 * 12 11 10 22 22 H 0.96999 * 120.00519 * 359.97438 * 1 2 3 23 23 H 1.07997 * 126.74431 * 0.02562 * 10 9 7 24 24 H 1.08996 * 109.64733 * 333.04273 * 15 13 12 25 25 H 1.09003 * 109.64065 * 93.46941 * 15 13 12 26 26 H 1.08997 * 109.92501 * 287.70614 * 16 15 13 27 27 H 1.09000 * 110.20688 * 166.23998 * 16 15 13 28 28 H 1.09002 * 110.78973 * 199.46816 * 17 16 15 29 29 H 1.09006 * 110.78878 * 76.19749 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 2.4914 2.0464 -1.4001 5 1 1.4413 2.6527 0.7000 6 1 3.5415 1.4402 0.7000 7 6 2.0086 -1.2101 -0.0005 8 1 3.0886 -1.2100 -0.0001 9 6 1.3024 -2.4335 -0.0005 10 6 -0.0762 -2.5949 0.0005 11 8 -0.3056 -3.9194 0.0006 12 6 0.8756 -4.5531 -0.0008 13 6 1.0557 -6.0494 -0.0006 14 1 2.0905 -6.3068 0.2255 15 6 0.6431 -6.6385 -1.3642 16 6 0.0361 -8.0364 -1.1393 17 6 -0.9715 -7.8971 0.0308 18 16 -0.0714 -6.8246 1.2137 19 8 -0.9592 -5.8409 1.7270 20 8 0.6796 -7.6352 2.1070 21 7 1.8420 -3.6849 0.0033 22 1 -0.4851 0.8400 0.0004 23 1 -0.8186 -1.8105 0.0010 24 1 -0.0981 -5.9918 -1.8336 25 1 1.5187 -6.7200 -2.0082 26 1 0.8215 -8.7440 -0.8735 27 1 -0.4803 -8.3718 -2.0387 28 1 -1.1851 -8.8692 0.4753 29 1 -1.8905 -7.4167 -0.3051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260958596.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:53 Heat of formation + Delta-G solvation = -87.906459 kcal Electronic energy + Delta-G solvation = -17237.786933 eV Core-core repulsion = 14253.439592 eV Total energy + Delta-G solvation = -2984.347340 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.055 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.28492 -38.14922 -37.52353 -37.03116 -36.13681 -34.66918 -32.35857 -29.64288 -27.52980 -26.10271 -22.85044 -22.52796 -21.90220 -20.06396 -19.22772 -17.80418 -17.68565 -17.37527 -16.94171 -16.64879 -16.26228 -15.57633 -15.15495 -14.98731 -14.78071 -14.11223 -13.56822 -13.29314 -13.22684 -13.10596 -13.05437 -13.00791 -12.88223 -12.36760 -12.01438 -11.93876 -11.86102 -11.66773 -11.36165 -11.07255 -10.97826 -9.29391 -8.67829 -6.54625 -1.06730 1.03791 1.36134 1.38455 1.50447 1.54772 2.09139 2.12479 2.22295 2.63721 2.89749 3.25588 3.36021 3.54017 3.72400 3.81051 4.10862 4.27983 4.57559 4.70219 4.84640 4.99646 5.04707 5.15854 5.23284 5.31096 5.52718 5.76398 6.27185 6.63730 6.81250 7.42908 8.38256 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.047117 B = 0.005608 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.125515 B = 4991.651922 C = 5081.706081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.019 3.981 3 Si 1.011 2.989 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.074 0.926 9 C 0.104 3.896 10 C -0.212 4.212 11 O -0.212 6.212 12 C 0.153 3.847 13 C -0.452 4.452 14 H 0.175 0.825 15 C -0.111 4.111 16 C -0.109 4.109 17 C -0.544 4.544 18 S 2.368 3.632 19 O -0.973 6.973 20 O -0.964 6.964 21 N -0.532 5.532 22 H 0.292 0.708 23 H 0.227 0.773 24 H 0.078 0.922 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.177 0.823 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 -14.411 -4.902 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.190 4.190 3 Si 0.831 3.169 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.092 0.908 9 C -0.012 4.012 10 C -0.283 4.283 11 O -0.099 6.099 12 C -0.054 4.054 13 C -0.560 4.560 14 H 0.192 0.808 15 C -0.150 4.150 16 C -0.147 4.147 17 C -0.679 4.679 18 S 2.555 3.445 19 O -0.970 6.970 20 O -0.961 6.961 21 N -0.269 5.269 22 H 0.103 0.897 23 H 0.243 0.757 24 H 0.097 0.903 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.157 0.843 28 H 0.195 0.805 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.308 -14.310 -3.869 15.002 hybrid contribution -0.177 1.350 -0.438 1.431 sum -2.484 -12.959 -4.307 13.880 Atomic orbital electron populations 1.69317 1.08735 1.30461 1.39834 1.26753 0.95915 1.04551 0.91826 0.84759 0.78204 0.74401 0.79536 1.18327 1.18690 1.18759 1.18827 0.94393 0.88728 1.47401 0.90818 1.19858 0.90915 0.90877 0.99503 1.26586 0.99581 0.79576 1.22507 1.84129 1.33654 1.20596 1.71492 1.24714 0.80075 0.95382 1.05203 1.28914 1.19026 0.90456 1.17573 0.80771 1.22253 1.04060 0.96950 0.91784 1.22432 0.97608 0.95270 0.99419 1.30466 1.10697 1.15039 1.11666 1.09858 0.77946 0.77468 0.79244 1.93596 1.63585 1.60883 1.78908 1.93554 1.72296 1.68369 1.61912 1.70672 1.33092 1.00943 1.22206 0.89698 0.75727 0.90308 0.86605 0.86563 0.84286 0.80517 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.15 10.34 21.79 0.23 -45.92 15 2 C 0.02 1.04 5.49 85.18 0.47 1.51 15 3 Si 1.01 40.50 29.56 68.60 2.03 42.53 15 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 5 H -0.26 -9.80 7.11 99.48 0.71 -9.10 15 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 7 C -0.46 -27.37 9.49 23.37 0.22 -27.15 15 8 H 0.07 4.29 7.84 -2.91 -0.02 4.27 15 9 C 0.10 6.34 6.89 39.33 0.27 6.62 15 10 C -0.21 -12.53 11.18 67.95 0.76 -11.77 15 11 O -0.21 -11.21 9.41 16.27 0.15 -11.06 15 12 C 0.15 7.35 6.57 88.39 0.58 7.93 15 13 C -0.45 -14.25 3.76 30.25 0.11 -14.14 15 14 H 0.17 4.92 8.14 -2.39 -0.02 4.90 15 15 C -0.11 -2.28 5.93 31.34 0.19 -2.09 15 16 C -0.11 -1.14 6.50 31.65 0.21 -0.93 15 17 C -0.54 -7.45 7.30 72.68 0.53 -6.92 15 18 S 2.37 69.25 5.94 -56.49 -0.34 68.91 15 19 O -0.97 -40.02 16.30 -120.30 -1.96 -41.98 15 20 O -0.96 -31.87 18.15 -127.47 -2.31 -34.19 15 21 N -0.53 -29.90 11.36 -296.17 -3.36 -33.26 15 22 H 0.29 14.08 8.30 -92.71 -0.77 13.31 15 23 H 0.23 13.33 5.78 -2.91 -0.02 13.31 15 24 H 0.08 1.84 7.85 -2.39 -0.02 1.82 15 25 H 0.12 2.00 8.14 -2.39 -0.02 1.98 15 26 H 0.12 0.71 8.14 -2.39 -0.02 0.69 15 27 H 0.14 0.64 8.14 -2.39 -0.02 0.62 15 28 H 0.18 1.25 8.14 -2.39 -0.02 1.23 15 29 H 0.16 1.88 8.14 -2.38 -0.02 1.86 15 Total: -1.00 -84.83 264.10 -1.06 -85.89 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.18 Total: 16.04 kcal Atomic # 6 Polarization: -50.29 SS G_CDS: 3.34 Total: -46.95 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -3.14 Total: -79.18 kcal Atomic # 8 Polarization: -83.11 SS G_CDS: -4.12 Total: -87.23 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 69.25 SS G_CDS: -0.34 Total: 68.91 kcal Total: -84.83 -1.06 -85.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260958596.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.019 kcal (2) G-P(sol) polarization free energy of solvation -84.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds