Wall clock time and date at job start Mon Mar 30 2020 04:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36172 * 118.96833 * 2 1 4 4 C 1.34841 * 121.08143 * 179.67035 * 3 2 1 5 5 Br 1.89095 * 120.44674 * 180.33095 * 4 3 2 6 6 C 1.46699 * 119.10726 * 0.60520 * 4 3 2 7 7 C 1.41239 * 120.92775 * 179.70739 * 6 4 3 8 8 H 1.08004 * 119.99717 * 335.13006 * 7 6 4 9 9 C 1.40305 * 120.00155 * 154.85660 * 7 6 4 10 10 N 1.30570 * 119.99636 * 344.07747 * 9 7 6 11 11 Si 1.86799 * 120.00251 * 164.07940 * 9 7 6 12 12 H 1.48491 * 109.47102 * 89.99628 * 11 9 7 13 13 H 1.48495 * 109.47128 * 210.00141 * 11 9 7 14 14 H 1.48499 * 109.46752 * 329.99746 * 11 9 7 15 15 C 1.40224 * 118.14009 * 359.43465 * 6 4 3 16 16 C 1.34339 * 118.97524 * 180.02562 * 2 1 3 17 17 O 1.22078 * 119.59792 * 0.02562 * 16 2 1 18 18 H 1.08997 * 109.47272 * 269.97527 * 1 2 3 19 19 H 1.09004 * 109.47873 * 29.97822 * 1 2 3 20 20 H 1.09006 * 109.46906 * 149.97664 * 1 2 3 21 21 H 1.08004 * 119.45953 * 0.02562 * 3 2 1 22 22 H 0.97001 * 119.99876 * 185.01737 * 10 9 7 23 23 H 1.07998 * 120.59050 * 180.24995 * 15 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1244 1.1914 0.0000 4 6 3.4719 1.2411 0.0066 5 35 4.3693 2.9055 0.0159 6 6 4.2323 -0.0134 0.0004 7 6 5.6447 -0.0062 0.0009 8 1 6.1804 0.8472 -0.3880 9 6 6.3518 -1.1051 0.5117 10 7 5.7407 -1.9842 1.2591 11 14 8.1672 -1.3104 0.1226 12 1 8.9767 -0.6230 1.1605 13 1 8.5092 -2.7553 0.1045 14 1 8.4588 -0.7161 -1.2066 15 6 3.5178 -1.2199 -0.0001 16 6 2.1157 -1.1752 -0.0005 17 8 1.4792 -2.2169 -0.0015 18 1 -0.3633 -0.0004 1.0276 19 1 -0.3635 0.8902 -0.5135 20 1 -0.3633 -0.8898 -0.5142 21 1 1.5589 2.1115 0.0004 22 1 6.2440 -2.7034 1.6719 23 1 4.0376 -2.1666 -0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261340726.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:27 Heat of formation + Delta-G solvation = -33.961314 kcal Electronic energy + Delta-G solvation = -11852.542318 eV Core-core repulsion = 9518.229728 eV Total energy + Delta-G solvation = -2334.312590 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.45354 -37.48523 -36.53106 -34.16500 -31.88905 -29.92439 -28.92361 -26.68792 -23.97724 -22.71149 -19.36025 -18.13024 -17.59366 -16.84230 -16.54929 -16.31434 -14.91617 -14.74730 -13.89586 -13.78295 -13.58358 -13.29556 -13.01129 -12.85472 -12.76853 -12.05497 -12.02198 -11.31523 -11.20851 -10.85977 -10.49270 -10.01681 -8.80936 -8.57481 -6.71283 0.52042 0.91497 1.11173 1.38462 1.53571 1.57913 2.13846 2.32361 2.65261 3.45183 3.85368 4.18904 4.53250 4.61587 4.72028 4.81766 5.03157 5.18315 5.58334 5.76120 5.96479 6.26917 6.57702 6.64131 6.82727 7.62824 8.14328 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.012931 C = 0.007790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.355015 B = 2164.883787 C = 3593.462500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.527 5.527 3 C 0.153 3.847 4 C -0.215 4.215 5 Br -0.028 7.028 6 C 0.141 3.859 7 C -0.440 4.440 8 H 0.107 0.893 9 C 0.031 3.969 10 N -0.787 5.787 11 Si 0.988 3.012 12 H -0.251 1.251 13 H -0.272 1.272 14 H -0.248 1.248 15 C -0.409 4.409 16 C 0.495 3.505 17 O -0.660 6.660 18 H 0.072 0.928 19 H 0.120 0.880 20 H 0.066 0.934 21 H 0.200 0.800 22 H 0.294 0.706 23 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 11.995 -1.586 12.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.239 5.239 3 C 0.026 3.974 4 C -0.301 4.301 5 Br 0.055 6.945 6 C 0.134 3.866 7 C -0.467 4.467 8 H 0.125 0.875 9 C -0.190 4.190 10 N -0.410 5.410 11 Si 0.807 3.193 12 H -0.175 1.175 13 H -0.196 1.196 14 H -0.171 1.171 15 C -0.434 4.434 16 C 0.310 3.690 17 O -0.556 6.556 18 H 0.091 0.909 19 H 0.138 0.862 20 H 0.085 0.915 21 H 0.216 0.784 22 H 0.106 0.894 23 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.994 11.739 -1.484 11.874 hybrid contribution 0.456 -1.031 0.137 1.135 sum -0.538 10.708 -1.348 10.806 Atomic orbital electron populations 1.22129 0.76669 1.04975 1.03718 1.45087 1.09445 1.05699 1.63681 1.21850 0.91866 0.89829 0.93876 1.22546 0.93829 0.92066 1.21696 1.96381 1.79535 1.20285 1.98275 1.18840 0.93943 0.88887 0.84897 1.20274 0.91181 1.02651 1.32605 0.87527 1.27159 1.06650 0.93002 0.92217 1.69848 1.40802 1.10972 1.19349 0.85097 0.74666 0.78699 0.80858 1.17488 1.19624 1.17101 1.21517 0.90295 0.98462 1.33121 1.17089 0.89733 0.82296 0.79902 1.90671 1.70201 1.33043 1.61680 0.90934 0.86155 0.91538 0.78354 0.89430 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.01 10.29 127.77 1.32 3.33 14 2 N -0.53 -22.02 2.98 -675.30 -2.02 -24.04 14 3 C 0.15 5.52 9.96 83.24 0.83 6.35 14 4 C -0.22 -9.01 6.39 23.70 0.15 -8.86 14 5 Br -0.03 -0.95 32.43 -20.37 -0.66 -1.61 14 6 C 0.14 7.32 5.74 -19.85 -0.11 7.21 14 7 C -0.44 -21.96 8.62 23.51 0.20 -21.76 14 8 H 0.11 4.89 7.11 -2.91 -0.02 4.87 14 9 C 0.03 1.48 5.21 85.38 0.44 1.93 14 10 N -0.79 -41.60 10.92 21.88 0.24 -41.36 14 11 Si 0.99 36.07 29.59 68.60 2.03 38.10 14 12 H -0.25 -8.54 7.11 99.48 0.71 -7.84 14 13 H -0.27 -9.78 7.11 99.48 0.71 -9.07 14 14 H -0.25 -8.68 7.11 99.48 0.71 -7.97 14 15 C -0.41 -23.77 8.73 23.25 0.20 -23.57 14 16 C 0.49 27.19 7.38 84.81 0.63 27.82 14 17 O -0.66 -40.20 16.51 -5.57 -0.09 -40.29 14 18 H 0.07 2.01 8.14 -2.39 -0.02 1.99 14 19 H 0.12 2.37 7.98 -2.39 -0.02 2.35 14 20 H 0.07 2.28 7.32 -2.38 -0.02 2.27 14 21 H 0.20 4.81 8.01 -2.91 -0.02 4.79 14 22 H 0.29 14.04 8.30 -92.71 -0.77 13.27 14 23 H 0.10 6.68 6.22 -2.91 -0.02 6.66 14 Total: -1.00 -69.84 229.16 4.39 -65.44 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.23 Total: 11.32 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 3.66 Total: -7.56 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -1.78 Total: -65.40 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.09 Total: -40.29 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Atomic # 35 Polarization: -0.95 SS G_CDS: -0.66 Total: -1.61 kcal Total: -69.84 4.39 -65.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261340726.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.482 kcal (2) G-P(sol) polarization free energy of solvation -69.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds