Wall clock time and date at job start Mon Mar 30 2020 04:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35504 * 116.99659 * 2 1 4 4 C 1.39343 * 119.39147 * 180.02562 * 3 2 1 5 5 C 1.36820 * 119.49616 * 180.30250 * 4 3 2 6 6 Br 1.89097 * 120.82052 * 179.72176 * 5 4 3 7 7 C 1.41376 * 118.35616 * 359.44109 * 5 4 3 8 8 C 1.41236 * 120.60274 * 180.26971 * 7 5 4 9 9 H 1.08008 * 119.99598 * 335.39959 * 8 7 5 10 10 C 1.39885 * 120.00355 * 155.40238 * 8 7 5 11 11 N 1.30887 * 120.00212 * 342.58111 * 10 8 7 12 12 Si 1.86803 * 120.00047 * 162.57918 * 10 8 7 13 13 H 1.48501 * 109.46841 * 89.99879 * 12 10 8 14 14 H 1.48494 * 109.47454 * 209.99801 * 12 10 8 15 15 H 1.48503 * 109.47222 * 330.00067 * 12 10 8 16 16 C 1.40712 * 118.79723 * 0.56970 * 7 5 4 17 17 N 1.31521 * 120.35102 * 359.69506 * 16 7 5 18 18 H 1.09006 * 109.47367 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.47537 * 299.99822 * 1 2 3 20 20 H 1.09003 * 109.47713 * 60.00132 * 1 2 3 21 21 H 1.07998 * 120.25177 * 0.02562 * 4 3 2 22 22 H 0.96996 * 120.00339 * 180.02562 * 11 10 8 23 23 H 1.08007 * 119.82114 * 179.71127 * 16 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4363 1.2656 -0.0005 5 6 4.0596 2.4836 0.0057 6 35 5.9466 2.6062 0.0131 7 6 3.2580 3.6481 0.0005 8 6 3.8517 4.9296 0.0009 9 1 4.8487 5.0627 0.3942 10 6 3.1484 6.0265 -0.5081 11 7 2.1099 5.8363 -1.2817 12 14 3.6914 7.7628 -0.0837 13 1 4.6700 8.2365 -1.0952 14 1 2.5106 8.6632 -0.0778 15 1 4.3253 7.7689 1.2592 16 6 1.8579 3.5073 0.0013 17 7 1.3103 2.3116 0.0008 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 4.0189 0.3563 -0.0014 22 1 1.6224 6.5969 -1.6349 23 1 1.2298 4.3859 0.0021 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306751586.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:43 Heat of formation + Delta-G solvation = -31.693476 kcal Electronic energy + Delta-G solvation = -11719.992687 eV Core-core repulsion = 9385.778438 eV Total energy + Delta-G solvation = -2334.214249 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.89303 -38.52043 -35.70691 -33.80175 -31.56045 -30.64871 -28.24414 -26.80526 -23.87814 -22.81725 -19.48014 -18.74320 -17.85400 -16.77456 -16.59077 -15.71234 -14.99483 -14.91719 -14.29337 -14.03858 -13.48446 -13.02709 -12.91491 -12.73817 -12.50324 -12.23438 -11.95868 -11.64600 -11.12148 -10.80885 -10.19500 -9.96786 -9.25694 -8.80748 -6.41434 0.56297 0.71442 1.01526 1.42739 1.50868 1.58466 2.19331 2.62334 2.69534 3.48014 3.94090 4.38617 4.53358 4.55541 4.65575 4.81765 4.98282 5.14810 5.16705 5.45431 5.74725 6.23937 6.38160 6.69588 6.79526 7.44430 8.18795 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.011586 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.067287 B = 2416.066875 C = 3787.489642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.332 6.332 3 C 0.162 3.838 4 C -0.120 4.120 5 C -0.154 4.154 6 Br -0.051 7.051 7 C 0.039 3.961 8 C -0.456 4.456 9 H 0.096 0.904 10 C 0.040 3.960 11 N -0.811 5.811 12 Si 0.984 3.016 13 H -0.261 1.261 14 H -0.264 1.264 15 H -0.255 1.255 16 C 0.063 3.937 17 N -0.518 5.518 18 H 0.122 0.878 19 H 0.043 0.957 20 H 0.039 0.961 21 H 0.136 0.864 22 H 0.297 0.703 23 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.887 -1.986 1.789 3.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.242 6.242 3 C -0.013 4.013 4 C -0.143 4.143 5 C -0.240 4.240 6 Br 0.034 6.966 7 C 0.032 3.968 8 C -0.484 4.484 9 H 0.114 0.886 10 C -0.178 4.178 11 N -0.436 5.436 12 Si 0.804 3.196 13 H -0.186 1.186 14 H -0.188 1.188 15 H -0.179 1.179 16 C -0.101 4.101 17 N -0.239 5.239 18 H 0.140 0.860 19 H 0.061 0.939 20 H 0.058 0.942 21 H 0.154 0.846 22 H 0.108 0.892 23 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.616 -2.227 1.641 3.807 hybrid contribution 0.209 0.791 -0.070 0.821 sum 2.825 -1.435 1.571 3.536 Atomic orbital electron populations 1.22768 0.77531 1.03506 1.00924 1.85973 1.22906 1.24673 1.90668 1.19348 0.88941 0.84566 1.08433 1.20284 0.91908 0.97393 1.04676 1.21526 0.89846 0.94904 1.17746 1.96316 1.03234 1.99004 1.98035 1.18562 0.92780 0.93380 0.92036 1.19869 1.02912 0.91301 1.34351 0.88585 1.26833 0.93596 1.05848 0.91492 1.69800 1.16318 1.36195 1.21314 0.85144 0.79142 0.75100 0.80204 1.18566 1.18796 1.17890 1.22698 0.92811 0.92069 1.02504 1.66870 1.41706 0.99436 1.15897 0.85994 0.93871 0.94247 0.84608 0.89158 0.83006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.59 10.37 113.37 1.18 2.77 14 2 O -0.33 -13.90 10.46 -88.06 -0.92 -14.82 14 3 C 0.16 7.71 7.50 84.85 0.64 8.35 14 4 C -0.12 -5.53 9.73 22.20 0.22 -5.31 14 5 C -0.15 -7.31 6.28 22.71 0.14 -7.17 14 6 Br -0.05 -2.01 32.27 -20.37 -0.66 -2.67 14 7 C 0.04 1.99 5.58 -21.17 -0.12 1.87 14 8 C -0.46 -22.48 8.52 23.41 0.20 -22.28 14 9 H 0.10 4.57 6.97 -2.91 -0.02 4.55 14 10 C 0.04 1.84 5.15 85.23 0.44 2.27 14 11 N -0.81 -38.98 10.98 21.82 0.24 -38.74 14 12 Si 0.98 34.89 29.59 68.60 2.03 36.92 14 13 H -0.26 -9.01 7.11 99.48 0.71 -8.30 14 14 H -0.26 -8.87 7.11 99.48 0.71 -8.16 14 15 H -0.26 -8.92 7.11 99.48 0.71 -8.22 14 16 C 0.06 3.30 9.89 85.34 0.84 4.14 14 17 N -0.52 -26.04 9.17 -306.59 -2.81 -28.85 14 18 H 0.12 2.93 8.14 -2.38 -0.02 2.91 14 19 H 0.04 1.45 8.10 -2.39 -0.02 1.43 14 20 H 0.04 1.35 8.10 -2.39 -0.02 1.34 14 21 H 0.14 5.54 8.06 -2.91 -0.02 5.52 14 22 H 0.30 12.78 8.30 -92.71 -0.77 12.01 14 23 H 0.15 8.00 6.19 -2.91 -0.02 7.99 14 Total: -1.00 -55.10 230.66 2.65 -52.45 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.23 Total: 11.06 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 3.53 Total: -15.35 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: -2.57 Total: -67.59 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.92 Total: -14.82 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Atomic # 35 Polarization: -2.01 SS G_CDS: -0.66 Total: -2.67 kcal Total: -55.10 2.65 -52.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306751586.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.756 kcal (2) G-P(sol) polarization free energy of solvation -55.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds