Wall clock time and date at job start Mon Mar 30 2020 04:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35405 * 117.00005 * 2 1 4 4 N 1.32050 * 119.87396 * 0.24872 * 3 2 1 5 5 C 1.32052 * 121.92481 * 180.29285 * 4 3 2 6 6 C 1.38555 * 121.43019 * 359.71938 * 5 4 3 7 7 C 1.38162 * 119.56626 * 359.97438 * 6 5 4 8 8 Br 1.89101 * 120.88463 * 179.97438 * 7 6 5 9 9 C 1.41138 * 118.23445 * 0.02562 * 7 6 5 10 10 C 1.41099 * 120.70113 * 179.97438 * 9 7 6 11 11 H 1.07996 * 119.99789 * 323.95268 * 10 9 7 12 12 C 1.39953 * 119.99806 * 143.96338 * 10 9 7 13 13 N 1.30856 * 119.99905 * 333.82559 * 12 10 9 14 14 Si 1.86793 * 119.99920 * 153.83007 * 12 10 9 15 15 H 1.48502 * 109.47093 * 269.99869 * 14 12 10 16 16 H 1.48502 * 109.47508 * 29.99409 * 14 12 10 17 17 H 1.48499 * 109.47460 * 149.99638 * 14 12 10 18 18 H 1.08999 * 109.47472 * 300.00257 * 1 2 3 19 19 H 1.09004 * 109.46669 * 59.99900 * 1 2 3 20 20 H 1.09001 * 109.46680 * 180.02562 * 1 2 3 21 21 H 1.08002 * 119.28093 * 179.74254 * 5 4 3 22 22 H 1.08004 * 120.21559 * 179.97438 * 6 5 4 23 23 H 0.97003 * 120.00498 * 353.01547 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2065 0.0000 4 7 1.3221 2.3123 0.0050 5 6 1.8791 3.5096 -0.0006 6 6 3.2558 3.6661 -0.0061 7 6 4.0689 2.5490 -0.0054 8 35 5.9522 2.7192 -0.0135 9 6 3.4564 1.2774 0.0006 10 6 4.2369 0.1019 0.0011 11 1 5.1635 0.0688 -0.5527 12 6 3.8100 -1.0211 0.7189 13 7 3.0283 -0.8750 1.7581 14 14 4.3563 -2.7284 0.1937 15 1 3.3783 -3.2847 -0.7755 16 1 5.6941 -2.6454 -0.4456 17 1 4.4308 -3.6126 1.3844 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.2478 4.3859 -0.0004 22 1 3.6905 4.6547 -0.0110 23 1 2.8265 0.0129 2.0924 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306939118.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:33 Heat of formation + Delta-G solvation = -14.285687 kcal Electronic energy + Delta-G solvation = -12142.184344 eV Core-core repulsion = 9808.724953 eV Total energy + Delta-G solvation = -2333.459391 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.16153 -36.48544 -34.25989 -31.65830 -29.55200 -28.69199 -26.44074 -25.13178 -21.72751 -21.20612 -18.14767 -16.90783 -15.88647 -14.87761 -14.61227 -14.03294 -13.56232 -13.18947 -12.61450 -11.96888 -11.88145 -11.46192 -11.17238 -10.77596 -10.54445 -10.43995 -10.14322 -9.90378 -9.20734 -8.96447 -8.39713 -8.11915 -7.47975 -7.21191 -4.56806 2.39962 2.49293 2.86563 3.17138 3.24795 3.35467 4.00690 4.39166 4.56077 5.19702 5.62181 6.00216 6.05485 6.08776 6.23753 6.40342 6.56030 6.96949 7.17549 7.44132 7.64204 7.83098 8.14285 8.56633 8.70191 9.23337 9.95320 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.013543 C = 0.008650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.882869 B = 2067.025043 C = 3236.273833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.283 6.283 3 C 0.239 3.761 4 N -0.516 5.516 5 C -0.023 4.023 6 C -0.123 4.123 7 C -0.164 4.164 8 Br -0.082 7.082 9 C 0.062 3.938 10 C -0.483 4.483 11 H 0.092 0.908 12 C 0.047 3.953 13 N -0.753 5.753 14 Si 1.069 2.931 15 H -0.272 1.272 16 H -0.275 1.275 17 H -0.276 1.276 18 H 0.043 0.957 19 H 0.041 0.959 20 H 0.079 0.921 21 H 0.130 0.870 22 H 0.110 0.890 23 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 2.223 -2.009 3.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.189 6.189 3 C 0.050 3.950 4 N -0.241 5.241 5 C -0.173 4.173 6 C -0.146 4.146 7 C -0.249 4.249 8 Br 0.002 6.998 9 C 0.054 3.946 10 C -0.510 4.510 11 H 0.109 0.891 12 C -0.179 4.179 13 N -0.373 5.373 14 Si 0.893 3.107 15 H -0.198 1.198 16 H -0.200 1.200 17 H -0.202 1.202 18 H 0.062 0.938 19 H 0.060 0.940 20 H 0.097 0.903 21 H 0.148 0.852 22 H 0.128 0.872 23 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.632 0.437 -1.613 2.336 hybrid contribution 0.265 2.041 -0.328 2.085 sum 1.897 2.479 -1.942 3.676 Atomic orbital electron populations 1.22519 0.80644 1.00991 1.00666 1.86348 1.19611 1.24439 1.88526 1.20109 0.88819 0.83808 1.02284 1.66701 1.41469 0.98890 1.16997 1.21240 0.91312 0.92739 1.11962 1.21304 0.94384 0.96904 1.01990 1.21364 0.87618 0.94693 1.21269 1.96314 1.07339 1.97987 1.98161 1.17398 0.89145 0.92832 0.95198 1.20535 1.07731 0.96008 1.26756 0.89055 1.26950 0.92535 1.05529 0.92873 1.70337 1.21215 1.29629 1.16111 0.83558 0.77072 0.73072 0.77030 1.19797 1.20037 1.20163 0.93814 0.94003 0.90269 0.85209 0.87190 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.96 10.38 101.05 1.05 2.01 14 2 O -0.28 -7.01 7.38 -17.91 -0.13 -7.14 14 3 C 0.24 6.13 6.57 -16.24 -0.11 6.03 14 4 N -0.52 -12.55 9.20 -12.64 -0.12 -12.66 14 5 C -0.02 -0.51 11.17 -17.34 -0.19 -0.70 14 6 C -0.12 -2.71 9.86 -39.49 -0.39 -3.10 14 7 C -0.16 -3.93 6.32 -38.51 -0.24 -4.17 14 8 Br -0.08 -1.72 32.49 -68.01 -2.21 -3.93 14 9 C 0.06 1.61 5.02 -106.49 -0.54 1.07 14 10 C -0.48 -12.41 8.12 -37.85 -0.31 -12.72 14 11 H 0.09 2.32 7.43 -52.49 -0.39 1.93 14 12 C 0.05 1.15 4.22 -17.33 -0.07 1.08 14 13 N -0.75 -19.56 11.93 55.55 0.66 -18.90 14 14 Si 1.07 21.50 30.00 -169.99 -5.10 16.40 14 15 H -0.27 -5.37 7.11 56.52 0.40 -4.97 14 16 H -0.28 -5.26 7.11 56.52 0.40 -4.85 14 17 H -0.28 -5.45 7.11 56.52 0.40 -5.05 14 18 H 0.04 0.86 8.10 -51.93 -0.42 0.44 14 19 H 0.04 0.79 8.11 -51.93 -0.42 0.37 14 20 H 0.08 1.35 8.14 -51.93 -0.42 0.93 14 21 H 0.13 2.45 8.06 -52.49 -0.42 2.03 14 22 H 0.11 2.10 8.06 -52.48 -0.42 1.68 14 23 H 0.29 7.98 7.26 -40.82 -0.30 7.68 14 LS Contribution 229.15 15.07 3.45 3.45 Total: -1.00 -27.26 229.15 -5.83 -33.10 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -1.59 Total: 0.18 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.80 Total: -10.51 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.55 Total: -31.56 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.13 Total: -7.14 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.10 Total: 16.40 kcal Atomic # 35 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -27.26 -5.83 -33.10 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306939118.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.810 kcal (2) G-P(sol) polarization free energy of solvation -27.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds