Wall clock time and date at job start Mon Mar 30 2020 04:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35405 * 117.00005 * 2 1 4 4 N 1.32050 * 119.87396 * 0.24872 * 3 2 1 5 5 C 1.32052 * 121.92481 * 180.29285 * 4 3 2 6 6 C 1.38555 * 121.43019 * 359.71938 * 5 4 3 7 7 C 1.38162 * 119.56626 * 359.97438 * 6 5 4 8 8 Br 1.89101 * 120.88463 * 179.97438 * 7 6 5 9 9 C 1.41138 * 118.23445 * 0.02562 * 7 6 5 10 10 C 1.41099 * 120.70113 * 179.97438 * 9 7 6 11 11 H 1.07996 * 119.99789 * 323.95268 * 10 9 7 12 12 C 1.39953 * 119.99806 * 143.96338 * 10 9 7 13 13 N 1.30856 * 119.99905 * 333.82559 * 12 10 9 14 14 Si 1.86793 * 119.99920 * 153.83007 * 12 10 9 15 15 H 1.48502 * 109.47093 * 269.99869 * 14 12 10 16 16 H 1.48502 * 109.47508 * 29.99409 * 14 12 10 17 17 H 1.48499 * 109.47460 * 149.99638 * 14 12 10 18 18 H 1.08999 * 109.47472 * 300.00257 * 1 2 3 19 19 H 1.09004 * 109.46669 * 59.99900 * 1 2 3 20 20 H 1.09001 * 109.46680 * 180.02562 * 1 2 3 21 21 H 1.08002 * 119.28093 * 179.74254 * 5 4 3 22 22 H 1.08004 * 120.21559 * 179.97438 * 6 5 4 23 23 H 0.97003 * 120.00498 * 353.01547 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2065 0.0000 4 7 1.3221 2.3123 0.0050 5 6 1.8791 3.5096 -0.0006 6 6 3.2558 3.6661 -0.0061 7 6 4.0689 2.5490 -0.0054 8 35 5.9522 2.7192 -0.0135 9 6 3.4564 1.2774 0.0006 10 6 4.2369 0.1019 0.0011 11 1 5.1635 0.0688 -0.5527 12 6 3.8100 -1.0211 0.7189 13 7 3.0283 -0.8750 1.7581 14 14 4.3563 -2.7284 0.1937 15 1 3.3783 -3.2847 -0.7755 16 1 5.6941 -2.6454 -0.4456 17 1 4.4308 -3.6126 1.3844 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.2478 4.3859 -0.0004 22 1 3.6905 4.6547 -0.0110 23 1 2.8265 0.0129 2.0924 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306939118.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:32 Heat of formation + Delta-G solvation = -31.619216 kcal Electronic energy + Delta-G solvation = -12142.935982 eV Core-core repulsion = 9808.724953 eV Total energy + Delta-G solvation = -2334.211029 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.97691 -38.27615 -36.08943 -33.47587 -31.36282 -30.47279 -28.10691 -26.96433 -23.55023 -23.02031 -19.98398 -18.69882 -17.69923 -16.64868 -16.38774 -15.64372 -15.33623 -14.88129 -14.39354 -13.75057 -13.70942 -13.17483 -12.82142 -12.43557 -12.26872 -12.01264 -11.82216 -11.65022 -10.94713 -10.75313 -10.23095 -9.93122 -9.34228 -9.06696 -6.47122 0.54080 0.67061 1.06085 1.55251 1.66154 1.81819 2.36375 2.65725 2.75831 3.34167 3.89579 4.38857 4.47410 4.49838 4.57443 4.71818 4.77584 5.12981 5.36113 5.61300 5.79171 5.91053 6.27147 6.73095 6.88818 7.38903 8.03458 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.013543 C = 0.008650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.882869 B = 2067.025043 C = 3236.273833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.304 6.304 3 C 0.216 3.784 4 N -0.526 5.526 5 C -0.017 4.017 6 C -0.127 4.127 7 C -0.174 4.174 8 Br -0.057 7.057 9 C 0.033 3.967 10 C -0.512 4.512 11 H 0.086 0.914 12 C 0.018 3.982 13 N -0.773 5.773 14 Si 1.112 2.888 15 H -0.267 1.267 16 H -0.260 1.260 17 H -0.271 1.271 18 H 0.039 0.961 19 H 0.048 0.952 20 H 0.106 0.894 21 H 0.168 0.832 22 H 0.143 0.857 23 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 2.725 -2.491 4.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.211 6.211 3 C 0.029 3.971 4 N -0.250 5.250 5 C -0.168 4.168 6 C -0.149 4.149 7 C -0.260 4.260 8 Br 0.028 6.972 9 C 0.026 3.974 10 C -0.540 4.540 11 H 0.104 0.896 12 C -0.202 4.202 13 N -0.393 5.393 14 Si 0.930 3.070 15 H -0.192 1.192 16 H -0.185 1.185 17 H -0.196 1.196 18 H 0.058 0.942 19 H 0.066 0.934 20 H 0.124 0.876 21 H 0.185 0.815 22 H 0.161 0.839 23 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.713 0.939 -2.098 2.867 hybrid contribution 0.207 2.115 -0.207 2.135 sum 1.921 3.054 -2.305 4.281 Atomic orbital electron populations 1.22729 0.78649 1.02871 1.00712 1.86298 1.21742 1.24467 1.88553 1.20303 0.89160 0.84403 1.03218 1.66785 1.41721 0.99322 1.17190 1.22004 0.92234 0.93211 1.09317 1.21683 0.94325 0.97867 1.01025 1.21844 0.89591 0.94827 1.19759 1.96309 1.05048 1.97825 1.98058 1.17775 0.89852 0.93879 0.95909 1.20569 1.08124 0.97003 1.28256 0.89598 1.28136 0.91655 1.08483 0.91953 1.70465 1.23465 1.28012 1.17382 0.83048 0.77518 0.69393 0.77036 1.19169 1.18452 1.19576 0.94195 0.93369 0.87555 0.81506 0.83921 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.81 10.38 113.37 1.18 2.99 14 2 O -0.30 -15.11 7.38 -86.99 -0.64 -15.75 14 3 C 0.22 11.11 6.57 85.45 0.56 11.67 14 4 N -0.53 -24.97 9.20 -307.01 -2.83 -27.79 14 5 C -0.02 -0.70 11.17 84.74 0.95 0.24 14 6 C -0.13 -5.28 9.86 22.33 0.22 -5.06 14 7 C -0.17 -8.15 6.32 22.96 0.15 -8.01 14 8 Br -0.06 -2.30 32.49 -20.37 -0.66 -2.96 14 9 C 0.03 1.72 5.02 -21.08 -0.11 1.62 14 10 C -0.51 -26.53 8.12 23.39 0.19 -26.34 14 11 H 0.09 4.39 7.43 -2.91 -0.02 4.37 14 12 C 0.02 0.88 4.22 85.25 0.36 1.24 14 13 N -0.77 -40.81 11.93 21.83 0.26 -40.55 14 14 Si 1.11 42.98 30.00 68.60 2.06 45.04 14 15 H -0.27 -9.97 7.11 99.48 0.71 -9.26 14 16 H -0.26 -9.31 7.11 99.48 0.71 -8.60 14 17 H -0.27 -10.12 7.11 99.48 0.71 -9.41 14 18 H 0.04 1.56 8.10 -2.39 -0.02 1.54 14 19 H 0.05 1.79 8.11 -2.39 -0.02 1.77 14 20 H 0.11 3.50 8.14 -2.39 -0.02 3.48 14 21 H 0.17 5.65 8.06 -2.91 -0.02 5.62 14 22 H 0.14 4.92 8.06 -2.91 -0.02 4.90 14 23 H 0.27 15.30 7.26 -92.71 -0.67 14.63 14 Total: -1.00 -57.64 229.15 3.00 -54.64 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.32 Total: 9.03 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 3.49 Total: -21.65 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -2.57 Total: -68.34 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.64 Total: -15.75 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.06 Total: 45.04 kcal Atomic # 35 Polarization: -2.30 SS G_CDS: -0.66 Total: -2.96 kcal Total: -57.64 3.00 -54.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306939118.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.016 kcal (2) G-P(sol) polarization free energy of solvation -57.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds