Wall clock time and date at job start Mon Mar 30 2020 04:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35395 * 117.00349 * 2 1 4 4 N 1.32046 * 119.87044 * 0.27894 * 3 2 1 5 5 C 1.32100 * 121.87825 * 180.31384 * 4 3 2 6 6 Br 1.89101 * 119.30613 * 179.69596 * 5 4 3 7 7 C 1.38797 * 121.38907 * 359.66412 * 5 4 3 8 8 C 1.37955 * 119.56936 * 0.03017 * 7 5 4 9 9 C 1.41054 * 118.27000 * 359.97438 * 8 7 5 10 10 C 1.41104 * 120.67949 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99839 * 150.54090 * 10 9 8 12 12 C 1.39939 * 119.99801 * 330.27288 * 10 9 8 13 13 N 1.30870 * 119.99620 * 161.81324 * 12 10 9 14 14 Si 1.86795 * 120.00156 * 341.80096 * 12 10 9 15 15 H 1.48500 * 109.46785 * 95.39425 * 14 12 10 16 16 H 1.48504 * 109.47406 * 215.39502 * 14 12 10 17 17 H 1.48496 * 109.47086 * 335.39465 * 14 12 10 18 18 H 1.09002 * 109.46995 * 300.00084 * 1 2 3 19 19 H 1.09004 * 109.46796 * 59.99691 * 1 2 3 20 20 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 21 21 H 1.08003 * 120.22177 * 180.02562 * 7 5 4 22 22 H 1.07999 * 120.86639 * 179.97438 * 8 7 5 23 23 H 0.96996 * 119.99856 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2063 0.0000 4 7 1.3221 2.3122 0.0056 5 6 1.8803 3.5095 -0.0003 6 35 0.7768 5.0451 -0.0004 7 6 3.2596 3.6640 -0.0058 8 6 4.0698 2.5474 -0.0057 9 6 3.4566 1.2772 0.0005 10 6 4.2365 0.1013 0.0004 11 1 3.8584 -0.7976 0.4646 12 6 5.4976 0.0982 -0.6062 13 7 6.3618 -0.8402 -0.3142 14 14 5.9474 1.4333 -1.8328 15 1 6.6861 2.5169 -1.1362 16 1 6.8041 0.8569 -2.9000 17 1 4.7094 1.9875 -2.4372 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 3.6959 4.6520 -0.0102 22 1 5.1455 2.6434 -0.0104 23 1 7.2361 -0.8421 -0.7343 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307471749.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:35 Heat of formation + Delta-G solvation = -31.833960 kcal Electronic energy + Delta-G solvation = -11855.754299 eV Core-core repulsion = 9521.533958 eV Total energy + Delta-G solvation = -2334.220341 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.05520 -38.46172 -36.07204 -33.54782 -32.38540 -30.95164 -28.26073 -26.77700 -23.89719 -23.18059 -19.54514 -19.05128 -17.91374 -16.93344 -16.66693 -15.84739 -15.28233 -14.98408 -14.54091 -14.30311 -13.93930 -13.45367 -12.80224 -12.72249 -12.31692 -12.24606 -11.86388 -11.44471 -11.20772 -11.14458 -10.40219 -10.34237 -9.31355 -9.05261 -6.57864 0.30043 0.60328 0.73589 1.24513 1.37501 1.47148 2.05643 2.42889 2.52764 3.25075 3.89260 4.30669 4.42553 4.48244 4.49864 4.60166 4.77551 4.93658 5.11910 5.44151 5.59672 6.03667 6.17610 6.52570 6.69046 7.13563 8.00595 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.029375 B = 0.008966 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.978675 B = 3122.079952 C = 3909.994164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.321 6.321 3 C 0.219 3.781 4 N -0.500 5.500 5 C 0.003 3.997 6 Br -0.029 7.029 7 C -0.102 4.102 8 C -0.208 4.208 9 C 0.034 3.966 10 C -0.432 4.432 11 H 0.068 0.932 12 C 0.051 3.949 13 N -0.817 5.817 14 Si 0.961 3.039 15 H -0.240 1.240 16 H -0.269 1.269 17 H -0.259 1.259 18 H 0.047 0.953 19 H 0.048 0.952 20 H 0.117 0.883 21 H 0.152 0.848 22 H 0.134 0.866 23 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.451 8.992 -1.526 10.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.229 6.229 3 C 0.031 3.969 4 N -0.225 5.225 5 C -0.207 4.207 6 Br 0.054 6.946 7 C -0.125 4.125 8 C -0.234 4.234 9 C 0.028 3.972 10 C -0.461 4.461 11 H 0.086 0.914 12 C -0.168 4.168 13 N -0.441 5.441 14 Si 0.782 3.218 15 H -0.165 1.165 16 H -0.195 1.195 17 H -0.183 1.183 18 H 0.066 0.934 19 H 0.067 0.933 20 H 0.135 0.865 21 H 0.170 0.830 22 H 0.151 0.849 23 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.414 9.086 -1.507 11.223 hybrid contribution 1.021 -0.243 -0.235 1.075 sum -5.393 8.842 -1.742 10.503 Atomic orbital electron populations 1.22870 0.77450 1.03661 1.01330 1.86140 1.22854 1.24675 1.89203 1.20039 0.89116 0.83607 1.04093 1.66349 1.41339 0.98046 1.16789 1.21680 0.90876 0.89996 1.18136 1.96452 1.69119 1.30750 1.98299 1.21556 0.91730 0.99928 0.99271 1.21279 0.99526 0.90949 1.11606 1.17973 0.89629 0.94723 0.94833 1.19338 0.99116 0.97224 1.30406 0.91367 1.26914 0.94048 0.98448 0.97395 1.69687 1.06624 1.32368 1.35416 0.85540 0.79592 0.78353 0.78271 1.16470 1.19491 1.18315 0.93408 0.93340 0.86533 0.83039 0.84852 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 10.38 113.37 1.18 2.64 14 2 O -0.32 -14.93 9.84 -86.88 -0.85 -15.79 14 3 C 0.22 10.76 7.54 85.46 0.64 11.41 14 4 N -0.50 -22.89 9.16 -301.85 -2.76 -25.65 14 5 C 0.00 0.11 7.17 84.79 0.61 0.72 14 6 Br -0.03 -0.96 33.85 -20.37 -0.69 -1.65 14 7 C -0.10 -4.12 9.79 22.34 0.22 -3.90 14 8 C -0.21 -9.31 7.29 22.89 0.17 -9.14 14 9 C 0.03 1.73 5.12 -21.09 -0.11 1.62 14 10 C -0.43 -23.18 9.21 23.39 0.22 -22.96 14 11 H 0.07 4.00 7.91 -2.91 -0.02 3.98 14 12 C 0.05 2.52 5.42 85.25 0.46 2.99 14 13 N -0.82 -41.15 13.93 21.83 0.30 -40.85 14 14 Si 0.96 38.73 24.53 68.60 1.68 40.42 14 15 H -0.24 -8.72 6.70 99.48 0.67 -8.05 14 16 H -0.27 -10.13 7.11 99.48 0.71 -9.42 14 17 H -0.26 -11.06 6.86 99.48 0.68 -10.37 14 18 H 0.05 1.63 8.10 -2.39 -0.02 1.61 14 19 H 0.05 1.66 8.11 -2.38 -0.02 1.64 14 20 H 0.12 3.18 8.14 -2.39 -0.02 3.16 14 21 H 0.15 4.94 8.06 -2.91 -0.02 4.92 14 22 H 0.13 5.58 4.81 -2.91 -0.01 5.56 14 23 H 0.30 13.44 8.30 -92.71 -0.77 12.67 14 Total: -1.00 -56.68 227.32 2.23 -54.45 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.17 Total: 5.69 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 3.38 Total: -16.62 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -2.46 Total: -66.50 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.85 Total: -15.79 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.68 Total: 40.42 kcal Atomic # 35 Polarization: -0.96 SS G_CDS: -0.69 Total: -1.65 kcal Total: -56.68 2.23 -54.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307471749.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.617 kcal (2) G-P(sol) polarization free energy of solvation -56.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds