Wall clock time and date at job start Mon Mar 30 2020 04:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35651 * 117.00257 * 2 1 4 4 C 1.38559 * 120.64547 * 359.97438 * 3 2 1 5 5 N 1.31835 * 120.90064 * 179.97438 * 4 3 2 6 6 C 1.32200 * 122.40146 * 0.02562 * 5 4 3 7 7 Br 1.89095 * 119.41232 * 180.02562 * 6 5 4 8 8 C 1.37634 * 121.17552 * 359.97438 * 6 5 4 9 9 C 1.41076 * 118.93516 * 0.27748 * 8 6 5 10 10 C 1.41215 * 121.06003 * 179.72247 * 9 8 6 11 11 H 1.07995 * 119.99883 * 155.97472 * 10 9 8 12 12 C 1.40057 * 120.00139 * 335.97052 * 10 9 8 13 13 N 1.30768 * 119.99970 * 343.27298 * 12 10 9 14 14 Si 1.86793 * 120.00172 * 163.27287 * 12 10 9 15 15 H 1.48500 * 109.47258 * 59.99954 * 14 12 10 16 16 H 1.48501 * 109.47292 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47144 * 300.00157 * 14 12 10 18 18 H 1.09001 * 109.46684 * 60.00154 * 1 2 3 19 19 H 1.08998 * 109.47174 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47118 * 300.00809 * 1 2 3 21 21 H 1.08002 * 119.55197 * 359.97438 * 4 3 2 22 22 H 1.07999 * 120.52879 * 179.97438 * 8 6 5 23 23 H 0.96994 * 119.99715 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.3035 2.3791 -0.0005 5 7 1.8968 3.5564 0.0000 6 6 3.2124 3.6867 0.0005 7 35 3.9742 5.4174 0.0019 8 6 4.0374 2.5850 0.0011 9 6 3.4584 1.2986 -0.0049 10 6 4.2624 0.1377 -0.0104 11 1 3.8676 -0.7943 0.3661 12 6 5.5717 0.1950 -0.5042 13 7 5.9463 1.2028 -1.2486 14 14 6.7831 -1.1680 -0.0995 15 1 6.2628 -2.4610 -0.6119 16 1 8.0915 -0.8729 -0.7368 17 1 6.9583 -1.2535 1.3728 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 0.2248 2.3264 -0.0014 22 1 5.1109 2.7035 0.0011 23 1 6.8532 1.2426 -1.5903 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307510904.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:08 Heat of formation + Delta-G solvation = -33.680440 kcal Electronic energy + Delta-G solvation = -11792.145913 eV Core-core repulsion = 9457.845502 eV Total energy + Delta-G solvation = -2334.300411 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.88810 -38.51256 -36.13818 -32.68950 -32.55001 -29.73359 -28.13368 -27.84403 -23.60238 -22.92236 -19.57805 -18.35004 -17.82237 -16.72935 -16.40578 -16.23050 -14.96552 -14.76565 -14.52465 -14.33998 -13.39497 -13.19488 -12.84636 -12.45872 -12.38946 -12.12400 -11.98823 -11.37597 -11.23499 -11.17689 -10.11336 -10.00353 -9.08618 -8.73699 -6.53032 0.56020 0.73864 0.76464 1.40323 1.51934 1.54862 2.18240 2.61543 2.76841 3.44452 3.92901 4.29869 4.49335 4.50774 4.68988 4.77157 5.07161 5.07659 5.20116 5.44568 5.88546 6.18379 6.50165 6.65977 6.91869 7.31525 8.18635 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.019138 B = 0.010572 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.668775 B = 2647.917479 C = 4030.882715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.327 6.327 3 C -0.031 4.031 4 C 0.028 3.972 5 N -0.543 5.543 6 C 0.095 3.905 7 Br -0.038 7.038 8 C -0.183 4.183 9 C 0.083 3.917 10 C -0.458 4.458 11 H 0.086 0.914 12 C 0.037 3.963 13 N -0.806 5.806 14 Si 0.990 3.010 15 H -0.258 1.258 16 H -0.263 1.263 17 H -0.258 1.258 18 H 0.054 0.946 19 H 0.118 0.882 20 H 0.057 0.943 21 H 0.167 0.833 22 H 0.132 0.868 23 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 0.966 1.660 2.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.241 6.241 3 C -0.079 4.079 4 C -0.127 4.127 5 N -0.260 5.260 6 C -0.117 4.117 7 Br 0.045 6.955 8 C -0.209 4.209 9 C 0.074 3.926 10 C -0.488 4.488 11 H 0.104 0.896 12 C -0.181 4.181 13 N -0.431 5.431 14 Si 0.810 3.190 15 H -0.182 1.182 16 H -0.187 1.187 17 H -0.182 1.182 18 H 0.072 0.928 19 H 0.136 0.864 20 H 0.076 0.924 21 H 0.183 0.817 22 H 0.150 0.850 23 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.164 2.280 1.510 3.488 hybrid contribution 0.516 -1.260 -0.040 1.362 sum -1.648 1.020 1.471 2.433 Atomic orbital electron populations 1.23205 0.77891 1.04897 1.01393 1.85914 1.22029 1.26392 1.89745 1.20333 0.92899 0.85434 1.09283 1.22512 0.99750 0.86483 1.03919 1.66964 1.10166 1.27142 1.21747 1.22228 0.91925 0.90752 1.06822 1.96421 1.81410 1.19705 1.97973 1.21805 1.00327 0.90183 1.08565 1.17691 0.89170 0.94180 0.91575 1.19677 0.97286 0.96215 1.35622 0.89555 1.26904 1.00126 0.99627 0.91485 1.69779 1.20784 1.30769 1.21738 0.85120 0.76336 0.77666 0.79919 1.18229 1.18733 1.18202 0.92763 0.86395 0.92429 0.81654 0.85000 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.82 113.37 1.11 1.72 14 2 O -0.33 -14.12 9.90 -89.66 -0.89 -15.01 14 3 C -0.03 -1.49 6.75 23.18 0.16 -1.34 14 4 C 0.03 1.26 10.22 84.77 0.87 2.13 14 5 N -0.54 -26.29 10.28 -190.86 -1.96 -28.25 14 6 C 0.10 4.67 7.15 84.49 0.60 5.28 14 7 Br -0.04 -1.55 33.85 -20.37 -0.69 -2.24 14 8 C -0.18 -9.60 8.49 22.82 0.19 -9.41 14 9 C 0.08 4.44 5.61 -21.02 -0.12 4.32 14 10 C -0.46 -23.88 8.81 23.44 0.21 -23.67 14 11 H 0.09 4.41 7.71 -2.91 -0.02 4.39 14 12 C 0.04 1.77 5.20 85.29 0.44 2.21 14 13 N -0.81 -39.96 10.93 21.85 0.24 -39.73 14 14 Si 0.99 36.03 29.59 68.60 2.03 38.06 14 15 H -0.26 -9.15 7.11 99.48 0.71 -8.44 14 16 H -0.26 -8.96 7.11 99.48 0.71 -8.26 14 17 H -0.26 -9.20 7.11 99.48 0.71 -8.50 14 18 H 0.05 1.47 7.68 -2.39 -0.02 1.45 14 19 H 0.12 2.66 8.14 -2.39 -0.02 2.64 14 20 H 0.06 1.52 7.68 -2.39 -0.02 1.50 14 21 H 0.17 6.08 6.32 -2.91 -0.02 6.06 14 22 H 0.13 7.06 6.21 -2.91 -0.02 7.04 14 23 H 0.30 13.19 8.29 -92.71 -0.77 12.42 14 Total: -1.00 -59.05 229.95 3.43 -55.62 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.24 Total: 10.30 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 3.47 Total: -18.76 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -1.72 Total: -67.98 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.89 Total: -15.01 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Atomic # 35 Polarization: -1.55 SS G_CDS: -0.69 Total: -2.24 kcal Total: -59.05 3.43 -55.62 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307510904.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.943 kcal (2) G-P(sol) polarization free energy of solvation -59.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds