Wall clock time and date at job start Mon Mar 30 2020 04:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47325 * 2 1 4 4 C 1.36937 * 119.99742 * 85.03293 * 3 2 1 5 5 H 1.08001 * 120.00070 * 209.81667 * 4 3 2 6 6 C 1.38804 * 120.00099 * 29.82119 * 4 3 2 7 7 N 1.31622 * 119.99848 * 40.65683 * 6 4 3 8 8 Si 1.86802 * 120.00048 * 220.65379 * 6 4 3 9 9 H 1.48503 * 109.46970 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.46947 * 60.00268 * 8 6 4 11 11 H 1.48493 * 109.47141 * 300.00152 * 8 6 4 12 12 C 1.46501 * 120.00028 * 265.04037 * 3 2 1 13 13 C 1.53000 * 109.46993 * 269.99583 * 12 3 2 14 14 N 1.46898 * 109.47336 * 180.02562 * 13 12 3 15 15 C 1.47013 * 111.00051 * 293.63561 * 14 13 12 16 16 C 1.53096 * 109.25733 * 177.60537 * 15 14 13 17 17 H 1.09002 * 109.50537 * 176.77908 * 16 15 14 18 18 C 1.53002 * 109.54318 * 296.89248 * 16 15 14 19 19 O 1.43015 * 109.25585 * 56.85130 * 16 15 14 20 20 C 1.43011 * 113.73813 * 301.32637 * 19 16 15 21 21 H 1.09005 * 109.50575 * 298.73596 * 20 19 16 22 22 C 1.53004 * 109.54131 * 178.63160 * 20 19 16 23 23 C 1.47018 * 110.99968 * 169.99783 * 14 13 12 24 24 H 1.09005 * 109.47206 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47164 * 299.99405 * 1 2 3 26 26 H 1.09000 * 109.47326 * 60.00457 * 1 2 3 27 27 H 1.09005 * 109.47051 * 239.99865 * 2 1 3 28 28 H 1.09003 * 109.46892 * 120.00165 * 2 1 3 29 29 H 0.96996 * 120.00185 * 5.83922 * 7 6 4 30 30 H 1.08997 * 109.47342 * 29.99307 * 12 3 2 31 31 H 1.09003 * 109.47139 * 149.99964 * 12 3 2 32 32 H 1.09008 * 109.47281 * 300.00117 * 13 12 3 33 33 H 1.08999 * 109.47067 * 59.99772 * 13 12 3 34 34 H 1.09003 * 109.50530 * 297.54471 * 15 14 13 35 35 H 1.09004 * 109.50506 * 57.66736 * 15 14 13 36 36 H 1.08994 * 109.46650 * 179.80556 * 18 16 15 37 37 H 1.09004 * 109.46756 * 299.80413 * 18 16 15 38 38 H 1.08992 * 109.46636 * 59.80519 * 18 16 15 39 39 H 1.08992 * 109.46932 * 300.19430 * 22 20 19 40 40 H 1.08994 * 109.47375 * 60.19539 * 22 20 19 41 41 H 1.09002 * 109.46939 * 180.19476 * 22 20 19 42 42 H 1.08997 * 109.50776 * 302.32786 * 23 14 13 43 43 H 1.08998 * 109.50259 * 62.41650 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1498 2.0609 1.1815 5 1 2.0322 3.1342 1.2030 6 6 2.4342 1.3703 2.3515 7 7 3.3024 0.3812 2.3374 8 14 1.5849 1.8449 3.9461 9 1 2.0582 0.9606 5.0413 10 1 0.1160 1.6940 3.7885 11 1 1.9048 3.2570 4.2761 12 6 2.3660 2.0352 -1.2640 13 6 3.8419 1.7839 -1.5792 14 7 4.1907 2.4402 -2.8463 15 6 3.4872 1.8139 -3.9751 16 6 3.8322 2.5645 -5.2641 17 1 3.3584 2.0691 -6.1116 18 6 3.3280 4.0059 -5.1676 19 8 5.2510 2.5658 -5.4439 20 6 5.9676 3.1689 -4.3632 21 1 5.6707 4.2134 -4.2675 22 6 7.4707 3.0883 -4.6377 23 6 5.6444 2.4246 -3.0650 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8059 0.1892 1.5308 30 1 1.7490 1.6285 -2.0652 31 1 2.1902 3.1076 -1.1786 32 1 4.4590 2.1906 -0.7779 33 1 4.0177 0.7116 -1.6646 34 1 3.7983 0.7731 -4.0655 35 1 2.4117 1.8594 -3.8041 36 1 3.5773 4.5400 -6.0844 37 1 2.2466 4.0041 -5.0306 38 1 3.8010 4.5000 -4.3191 39 1 7.7667 2.0438 -4.7348 40 1 7.7002 3.6184 -5.5619 41 1 8.0159 3.5452 -3.8118 42 1 6.1435 2.9158 -2.2298 43 1 5.9900 1.3936 -3.1402 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314065627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:14 Heat of formation + Delta-G solvation = -27.064790 kcal Electronic energy + Delta-G solvation = -20429.557842 eV Core-core repulsion = 17510.313869 eV Total energy + Delta-G solvation = -2919.243973 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.88174 -36.68478 -35.17155 -33.36099 -31.56925 -30.67414 -29.69388 -27.31236 -26.78344 -24.41515 -23.29962 -22.81379 -21.34817 -19.80111 -19.33856 -17.15105 -16.42304 -16.24506 -15.29072 -14.95834 -14.63225 -14.24484 -14.06685 -13.71479 -13.48421 -12.98902 -12.70807 -12.58723 -12.37008 -12.32078 -12.05461 -11.84107 -11.59682 -11.57436 -11.11533 -11.03331 -10.85321 -10.67930 -10.57500 -10.25943 -10.10379 -10.00989 -9.87046 -9.51431 -9.43623 -8.23577 -8.04823 -6.87736 -6.15045 -3.20061 3.50557 3.55922 3.72585 3.73326 4.05833 4.63770 4.83770 4.91986 5.06211 5.13156 5.16672 5.20877 5.36987 5.44535 5.47557 5.57011 5.64934 5.68801 5.83002 5.89058 5.92945 5.96848 6.06435 6.08960 6.12147 6.17505 6.32933 6.36151 6.43354 6.50917 6.66369 6.76076 6.86621 7.11815 7.22684 7.32117 7.34117 7.37872 8.14393 8.55549 9.11775 9.85278 10.31986 11.07138 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.029180 B = 0.005046 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.341036 B = 5547.283940 C = 5982.569181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 N -0.590 5.590 4 C -0.366 4.366 5 H 0.053 0.947 6 C -0.010 4.010 7 N -0.884 5.884 8 Si 1.043 2.957 9 H -0.287 1.287 10 H -0.293 1.293 11 H -0.292 1.292 12 C 0.157 3.843 13 C 0.039 3.961 14 N -0.532 5.532 15 C 0.023 3.977 16 C 0.091 3.909 17 H 0.100 0.900 18 C -0.174 4.174 19 O -0.382 6.382 20 C 0.087 3.913 21 H 0.068 0.932 22 C -0.143 4.143 23 C 0.024 3.976 24 H 0.035 0.965 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.024 0.976 28 H 0.069 0.931 29 H 0.268 0.732 30 H 0.032 0.968 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.022 0.978 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 3.671 -13.823 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 N -0.312 5.312 4 C -0.494 4.494 5 H 0.071 0.929 6 C -0.215 4.215 7 N -0.520 5.520 8 Si 0.872 3.128 9 H -0.213 1.213 10 H -0.220 1.220 11 H -0.219 1.219 12 C 0.030 3.970 13 C -0.091 4.091 14 N -0.257 5.257 15 C -0.106 4.106 16 C 0.033 3.967 17 H 0.118 0.882 18 C -0.231 4.231 19 O -0.301 6.301 20 C 0.029 3.971 21 H 0.086 0.914 22 C -0.201 4.201 23 C -0.104 4.104 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.511 3.676 -12.324 13.104 hybrid contribution 0.315 -0.376 -1.358 1.444 sum 2.825 3.299 -13.682 14.355 Atomic orbital electron populations 1.22181 0.99703 0.98815 1.01059 1.20833 0.91811 0.86613 0.99793 1.44040 1.73273 1.11885 1.02045 1.19701 1.50382 0.93183 0.86172 0.92887 1.25644 0.96589 0.98409 1.00850 1.70812 1.17339 1.34122 1.29761 0.83863 0.76757 0.75598 0.76559 1.21301 1.22023 1.21872 1.20858 0.90528 0.97409 0.88220 1.23005 1.01646 0.95476 0.88978 1.62307 1.05651 1.55024 1.02720 1.22792 1.00386 0.96092 0.91318 1.22246 0.81308 0.96255 0.96906 0.88244 1.22262 1.01890 0.96650 1.02310 1.87983 1.17889 1.81016 1.43242 1.22148 0.92210 0.96808 0.85944 0.91399 1.21742 0.93307 1.02798 1.02268 1.22783 0.89877 0.99537 0.98230 0.94644 0.92610 0.94540 0.95727 0.91313 0.92219 0.94971 0.93037 0.90650 0.96002 0.94607 0.89425 0.92785 0.91701 0.90847 0.92053 0.91847 0.90996 0.89953 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.21 37.16 0.38 -2.87 16 2 C 0.14 3.15 5.90 -4.04 -0.02 3.13 16 3 N -0.59 -14.50 2.36 -173.24 -0.41 -14.91 16 4 C -0.37 -10.06 9.25 -15.06 -0.14 -10.20 16 5 H 0.05 1.51 8.06 -52.49 -0.42 1.09 16 6 C -0.01 -0.27 4.52 -17.43 -0.08 -0.35 16 7 N -0.88 -25.86 12.21 55.49 0.68 -25.19 16 8 Si 1.04 24.97 30.06 -169.99 -5.11 19.86 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.16 3.30 5.58 -4.04 -0.02 3.27 16 13 C 0.04 0.75 5.28 -3.83 -0.02 0.73 16 14 N -0.53 -8.64 4.09 -234.31 -0.96 -9.60 16 15 C 0.02 0.33 4.85 -3.71 -0.02 0.31 16 16 C 0.09 1.15 3.92 -26.68 -0.10 1.05 16 17 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 18 C -0.17 -2.04 8.89 37.16 0.33 -1.71 16 19 O -0.38 -5.33 10.29 -35.23 -0.36 -5.69 16 20 C 0.09 1.11 3.02 -26.68 -0.08 1.03 16 21 H 0.07 0.87 6.49 -51.93 -0.34 0.53 16 22 C -0.14 -1.49 9.57 37.16 0.36 -1.14 16 23 C 0.02 0.36 4.93 -3.71 -0.02 0.34 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.02 0.53 8.03 -51.93 -0.42 0.11 16 28 H 0.07 1.80 5.70 -51.93 -0.30 1.50 16 29 H 0.27 7.94 8.11 -40.82 -0.33 7.61 16 30 H 0.03 0.62 6.45 -51.93 -0.33 0.29 16 31 H 0.05 1.13 8.04 -51.93 -0.42 0.71 16 32 H 0.08 1.66 8.04 -51.92 -0.42 1.24 16 33 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.26 6.38 -51.93 -0.33 0.93 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.97 6.13 -51.93 -0.32 0.65 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -28.99 333.46 -8.49 -37.48 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.91 Total: -0.58 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 0.56 Total: -6.40 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.69 Total: -49.70 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.36 Total: -5.69 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.11 Total: 19.86 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.99 -8.49 -37.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314065627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.415 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds