Wall clock time and date at job start Mon Mar 30 2020 04:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99571 * 2 1 4 4 C 1.52990 * 109.47719 * 287.13577 * 3 2 1 5 5 O 1.42898 * 109.47292 * 67.01221 * 4 3 2 6 6 C 1.42896 * 114.00585 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47764 * 180.02562 * 6 5 4 8 8 H 1.08008 * 119.99653 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00452 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99521 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00052 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47283 * 59.99985 * 11 9 7 13 13 H 1.48496 * 109.47154 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47417 * 300.00243 * 11 9 7 15 15 C 1.46897 * 110.99934 * 123.95371 * 2 1 3 16 16 H 1.08996 * 110.43815 * 293.50922 * 15 2 1 17 17 C 1.54894 * 110.59627 * 170.88700 * 15 2 1 18 18 C 1.54962 * 102.77581 * 203.35195 * 17 15 2 19 19 C 1.54265 * 104.16092 * 37.89096 * 18 17 15 20 20 C 1.53877 * 106.63983 * 336.44155 * 19 18 17 21 21 H 1.09003 * 110.02703 * 119.31116 * 20 19 18 22 22 C 1.52993 * 110.03568 * 240.69225 * 20 19 18 23 23 N 1.46905 * 109.47252 * 293.54808 * 22 20 19 24 24 H 1.09001 * 109.47275 * 303.04757 * 1 2 3 25 25 H 1.09002 * 109.47092 * 63.04719 * 1 2 3 26 26 H 1.09004 * 109.46987 * 183.04713 * 1 2 3 27 27 H 1.09007 * 109.46902 * 47.14142 * 3 2 1 28 28 H 1.09001 * 109.46667 * 167.13309 * 3 2 1 29 29 H 1.08998 * 109.47464 * 187.01663 * 4 3 2 30 30 H 1.09001 * 109.47120 * 307.01635 * 4 3 2 31 31 H 1.09008 * 109.46966 * 300.00295 * 6 5 4 32 32 H 1.09005 * 109.47350 * 59.99854 * 6 5 4 33 33 H 0.97001 * 119.99794 * 179.97438 * 10 9 7 34 34 H 1.08995 * 110.75435 * 321.64320 * 17 15 2 35 35 H 1.08999 * 110.75182 * 85.01110 * 17 15 2 36 36 H 1.09001 * 110.47683 * 279.23337 * 18 17 15 37 37 H 1.09005 * 110.53016 * 156.57017 * 18 17 15 38 38 H 1.08999 * 110.02913 * 217.13710 * 19 18 17 39 39 H 1.08994 * 110.03297 * 95.75258 * 19 18 17 40 40 H 1.09004 * 109.47018 * 53.54674 * 22 20 19 41 41 H 1.08997 * 109.47649 * 173.55089 * 22 20 19 42 42 H 1.00898 * 111.00205 * 179.97438 * 23 22 20 43 43 H 1.00903 * 110.99932 * 303.95573 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.7814 2.0000 -1.3783 5 8 0.3822 2.1758 -1.6097 6 6 0.0713 2.7588 -2.8767 7 6 -1.4231 2.8975 -3.0128 8 1 -2.0707 2.5725 -2.2119 9 6 -1.9636 3.4394 -4.1597 10 7 -1.1750 3.8346 -5.1351 11 14 -3.8161 3.6106 -4.3286 12 1 -4.3339 4.4807 -3.2423 13 1 -4.1392 4.2166 -5.6452 14 1 -4.4480 2.2702 -4.2328 15 6 1.9954 -0.7660 1.1376 16 1 1.7514 -0.2691 2.0765 17 6 3.5272 -0.9540 1.0057 18 6 3.7930 -2.2148 1.8666 19 6 2.5779 -3.1239 1.5897 20 6 1.4354 -2.2033 1.1260 21 1 1.1229 -2.4751 0.1177 22 6 0.2511 -2.3121 2.0885 23 7 -0.3265 -3.6602 2.0038 24 1 -0.3634 0.5604 0.8614 25 1 -0.3633 0.4658 -0.9161 26 1 -0.3633 -1.0263 0.0546 27 1 1.4729 1.9612 0.7534 28 1 3.0609 1.3517 0.2289 29 1 2.2806 2.9681 -1.4177 30 1 2.1969 1.3455 -2.1446 31 1 0.5351 3.7427 -2.9476 32 1 0.4513 2.1198 -3.6739 33 1 -1.5553 4.2154 -5.9421 34 1 3.8067 -1.1303 -0.0330 35 1 4.0583 -0.0918 1.4088 36 1 3.8400 -1.9520 2.9234 37 1 4.7151 -2.7044 1.5530 38 1 2.2887 -3.6482 2.5005 39 1 2.8198 -3.8423 0.8065 40 1 0.5924 -2.1264 3.1069 41 1 -0.5053 -1.5752 1.8187 42 1 -1.1108 -3.7576 2.6310 43 1 -0.5917 -3.8810 1.0556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385224697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:29 Heat of formation + Delta-G solvation = -57.812709 kcal Electronic energy + Delta-G solvation = -19891.033144 eV Core-core repulsion = 16970.455841 eV Total energy + Delta-G solvation = -2920.577303 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.48014 -37.02453 -35.11697 -34.10260 -32.67682 -29.86386 -28.68441 -27.63164 -26.88363 -24.73044 -23.04881 -22.23007 -21.32235 -19.98918 -19.47461 -16.67170 -16.41236 -16.04126 -15.56765 -15.19425 -14.65236 -14.55075 -14.41831 -14.00616 -13.74901 -13.64160 -13.28339 -12.67712 -12.36252 -12.08813 -11.76251 -11.48044 -11.46824 -11.08722 -11.01024 -10.92945 -10.85448 -10.76888 -10.64851 -10.56339 -10.42702 -10.31245 -9.89378 -9.09164 -8.81780 -8.75202 -8.14138 -7.98579 -6.10358 -4.12148 3.31210 3.34305 3.37660 4.10635 4.32673 4.34943 4.56668 4.80014 4.85226 4.97552 5.15988 5.26069 5.30642 5.37398 5.48489 5.52222 5.54569 5.63622 5.71831 5.73756 5.86970 5.93607 5.96926 6.02665 6.04589 6.10518 6.18504 6.24917 6.30654 6.37963 6.44118 6.87344 6.95477 7.15149 7.25758 7.37346 7.45958 7.49560 7.78886 8.17006 8.60172 9.01033 9.52631 11.01149 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.027542 B = 0.004304 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.379227 B = 6503.689788 C = 7275.980331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.527 5.527 3 C 0.059 3.941 4 C 0.067 3.933 5 O -0.392 6.392 6 C 0.195 3.805 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.907 3.093 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.080 3.920 16 H 0.041 0.959 17 C -0.116 4.116 18 C -0.125 4.125 19 C -0.106 4.106 20 C -0.083 4.083 21 H 0.082 0.918 22 C 0.060 3.940 23 N -0.850 5.850 24 H 0.016 0.984 25 H 0.107 0.893 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.003 0.997 32 H 0.005 0.995 33 H 0.264 0.736 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.033 0.967 42 H 0.338 0.662 43 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.348 -11.686 13.963 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.252 5.252 3 C -0.069 4.069 4 C -0.011 4.011 5 O -0.312 6.312 6 C 0.121 3.879 7 C -0.553 4.553 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.734 3.266 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.029 4.029 16 H 0.059 0.941 17 C -0.154 4.154 18 C -0.163 4.163 19 C -0.144 4.144 20 C -0.102 4.102 21 H 0.101 0.899 22 C -0.070 4.070 23 N -0.379 5.379 24 H 0.034 0.966 25 H 0.126 0.874 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.150 0.850 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.061 -12.122 13.733 20.013 hybrid contribution -1.899 1.220 0.010 2.257 sum 6.161 -10.902 13.744 18.593 Atomic orbital electron populations 1.22763 0.86386 1.00335 1.03514 1.62132 1.08884 1.13219 1.40928 1.22173 0.99217 0.88384 0.97079 1.22259 0.85806 0.97483 0.95548 1.87816 1.20113 1.83116 1.40203 1.20167 0.96341 0.91841 0.79597 1.21005 0.90999 1.40990 1.02273 0.91772 1.24938 0.98805 0.95307 0.95373 1.69951 1.35132 1.41913 1.06718 0.86424 0.84480 0.78499 0.77220 1.20092 1.21155 1.20045 1.22532 0.94797 0.93410 0.92152 0.94137 1.22547 0.94607 0.97272 1.00930 1.22363 0.98264 0.96236 0.99481 1.22027 0.93734 0.97241 1.01441 1.21778 0.94783 0.94114 0.99561 0.89944 1.22082 0.96146 0.89245 0.99576 1.58730 1.38225 1.28136 1.12840 0.96569 0.87436 0.92692 0.94423 0.90446 0.94352 0.93604 0.97942 0.97687 0.92619 0.90304 0.92038 0.92092 0.91788 0.91163 0.92106 0.91484 0.94873 0.84980 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 7.97 60.06 0.48 0.77 16 2 N -0.53 -8.07 4.55 -232.89 -1.06 -9.13 16 3 C 0.06 0.92 5.42 -3.83 -0.02 0.90 16 4 C 0.07 1.26 6.23 37.15 0.23 1.50 16 5 O -0.39 -9.27 7.39 -35.23 -0.26 -9.53 16 6 C 0.19 5.33 5.69 36.00 0.20 5.54 16 7 C -0.51 -15.04 9.43 -34.44 -0.32 -15.37 16 8 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 10 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 11 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.08 1.00 2.15 -66.05 -0.14 0.86 16 16 H 0.04 0.52 7.85 -51.93 -0.41 0.11 16 17 C -0.12 -1.26 5.50 -24.70 -0.14 -1.40 16 18 C -0.13 -1.19 6.84 -25.03 -0.17 -1.36 16 19 C -0.11 -1.09 6.27 -25.61 -0.16 -1.25 16 20 C -0.08 -0.95 1.96 -89.50 -0.18 -1.12 16 21 H 0.08 1.07 7.46 -51.93 -0.39 0.68 16 22 C 0.06 0.63 5.46 -3.83 -0.02 0.61 16 23 N -0.85 -7.92 9.32 -10.37 -0.10 -8.02 16 24 H 0.02 0.26 8.05 -51.93 -0.42 -0.16 16 25 H 0.11 2.19 5.58 -51.93 -0.29 1.90 16 26 H 0.05 0.81 5.19 -51.93 -0.27 0.54 16 27 H 0.04 0.61 7.97 -51.93 -0.41 0.19 16 28 H 0.08 1.02 6.57 -51.93 -0.34 0.67 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.00 0.08 8.14 -51.92 -0.42 -0.34 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.62 7.60 -51.93 -0.39 0.23 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.72 7.58 -51.93 -0.39 0.33 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.03 0.38 5.99 -51.93 -0.31 0.07 16 42 H 0.34 2.64 9.08 -39.29 -0.36 2.28 16 43 H 0.34 3.06 8.99 -39.29 -0.35 2.71 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -30.20 331.10 -8.73 -38.94 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.69 Total: 0.94 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -0.33 Total: -8.77 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.42 Total: -43.35 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.26 Total: -9.53 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.20 -8.73 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385224697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.876 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds