Wall clock time and date at job start Mon Mar 30 2020 04:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99571 * 2 1 4 4 C 1.52990 * 109.47719 * 287.13577 * 3 2 1 5 5 O 1.42898 * 109.47292 * 67.01221 * 4 3 2 6 6 C 1.42896 * 114.00585 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47764 * 180.02562 * 6 5 4 8 8 H 1.08008 * 119.99653 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00452 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99521 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00052 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47283 * 59.99985 * 11 9 7 13 13 H 1.48496 * 109.47154 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47417 * 300.00243 * 11 9 7 15 15 C 1.46897 * 110.99934 * 123.95371 * 2 1 3 16 16 H 1.08996 * 110.43815 * 293.50922 * 15 2 1 17 17 C 1.54894 * 110.59627 * 170.88700 * 15 2 1 18 18 C 1.54962 * 102.77581 * 203.35195 * 17 15 2 19 19 C 1.54265 * 104.16092 * 37.89096 * 18 17 15 20 20 C 1.53877 * 106.63983 * 336.44155 * 19 18 17 21 21 H 1.09003 * 110.02703 * 119.31116 * 20 19 18 22 22 C 1.52993 * 110.03568 * 240.69225 * 20 19 18 23 23 N 1.46905 * 109.47252 * 293.54808 * 22 20 19 24 24 H 1.09001 * 109.47275 * 303.04757 * 1 2 3 25 25 H 1.09002 * 109.47092 * 63.04719 * 1 2 3 26 26 H 1.09004 * 109.46987 * 183.04713 * 1 2 3 27 27 H 1.09007 * 109.46902 * 47.14142 * 3 2 1 28 28 H 1.09001 * 109.46667 * 167.13309 * 3 2 1 29 29 H 1.08998 * 109.47464 * 187.01663 * 4 3 2 30 30 H 1.09001 * 109.47120 * 307.01635 * 4 3 2 31 31 H 1.09008 * 109.46966 * 300.00295 * 6 5 4 32 32 H 1.09005 * 109.47350 * 59.99854 * 6 5 4 33 33 H 0.97001 * 119.99794 * 179.97438 * 10 9 7 34 34 H 1.08995 * 110.75435 * 321.64320 * 17 15 2 35 35 H 1.08999 * 110.75182 * 85.01110 * 17 15 2 36 36 H 1.09001 * 110.47683 * 279.23337 * 18 17 15 37 37 H 1.09005 * 110.53016 * 156.57017 * 18 17 15 38 38 H 1.08999 * 110.02913 * 217.13710 * 19 18 17 39 39 H 1.08994 * 110.03297 * 95.75258 * 19 18 17 40 40 H 1.09004 * 109.47018 * 53.54674 * 22 20 19 41 41 H 1.08997 * 109.47649 * 173.55089 * 22 20 19 42 42 H 1.00898 * 111.00205 * 179.97438 * 23 22 20 43 43 H 1.00903 * 110.99932 * 303.95573 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.7814 2.0000 -1.3783 5 8 0.3822 2.1758 -1.6097 6 6 0.0713 2.7588 -2.8767 7 6 -1.4231 2.8975 -3.0128 8 1 -2.0707 2.5725 -2.2119 9 6 -1.9636 3.4394 -4.1597 10 7 -1.1750 3.8346 -5.1351 11 14 -3.8161 3.6106 -4.3286 12 1 -4.3339 4.4807 -3.2423 13 1 -4.1392 4.2166 -5.6452 14 1 -4.4480 2.2702 -4.2328 15 6 1.9954 -0.7660 1.1376 16 1 1.7514 -0.2691 2.0765 17 6 3.5272 -0.9540 1.0057 18 6 3.7930 -2.2148 1.8666 19 6 2.5779 -3.1239 1.5897 20 6 1.4354 -2.2033 1.1260 21 1 1.1229 -2.4751 0.1177 22 6 0.2511 -2.3121 2.0885 23 7 -0.3265 -3.6602 2.0038 24 1 -0.3634 0.5604 0.8614 25 1 -0.3633 0.4658 -0.9161 26 1 -0.3633 -1.0263 0.0546 27 1 1.4729 1.9612 0.7534 28 1 3.0609 1.3517 0.2289 29 1 2.2806 2.9681 -1.4177 30 1 2.1969 1.3455 -2.1446 31 1 0.5351 3.7427 -2.9476 32 1 0.4513 2.1198 -3.6739 33 1 -1.5553 4.2154 -5.9421 34 1 3.8067 -1.1303 -0.0330 35 1 4.0583 -0.0918 1.4088 36 1 3.8400 -1.9520 2.9234 37 1 4.7151 -2.7044 1.5530 38 1 2.2887 -3.6482 2.5005 39 1 2.8198 -3.8423 0.8065 40 1 0.5924 -2.1264 3.1069 41 1 -0.5053 -1.5752 1.8187 42 1 -1.1108 -3.7576 2.6310 43 1 -0.5917 -3.8810 1.0556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385224697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:29 Heat of formation + Delta-G solvation = -79.433412 kcal Electronic energy + Delta-G solvation = -19891.970688 eV Core-core repulsion = 16970.455841 eV Total energy + Delta-G solvation = -2921.514847 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51706 -38.68242 -36.43877 -34.98408 -34.80660 -31.25172 -29.77897 -28.88635 -28.63805 -25.93737 -24.50410 -23.99611 -22.51608 -21.02466 -20.39399 -18.61908 -17.87214 -17.28754 -16.92333 -16.73248 -16.28814 -15.58757 -15.50968 -15.28395 -15.15607 -14.80650 -14.55162 -14.21522 -13.60895 -13.39299 -13.30962 -12.99487 -12.93306 -12.69618 -12.57692 -12.41300 -12.21120 -11.87907 -11.79535 -11.65525 -11.54791 -11.48995 -11.25404 -11.20153 -10.82832 -10.15509 -9.58467 -9.24118 -8.31851 -6.44145 1.38858 1.43413 1.51822 2.33925 2.94214 3.02056 3.23597 3.49168 3.67725 3.92420 3.98391 4.16171 4.33501 4.35402 4.39571 4.48682 4.54763 4.56914 4.59970 4.64737 4.68153 4.78076 4.84215 4.84794 4.94079 4.97135 5.07380 5.16125 5.19345 5.24632 5.32701 5.40089 5.48271 5.54336 5.56417 5.96992 6.09954 6.18897 6.31420 6.54660 6.57211 6.83025 7.27767 8.80408 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.027542 B = 0.004304 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.379227 B = 6503.689788 C = 7275.980331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.538 5.538 3 C 0.068 3.932 4 C 0.058 3.942 5 O -0.398 6.398 6 C 0.210 3.790 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.981 3.019 12 H -0.266 1.266 13 H -0.276 1.276 14 H -0.265 1.265 15 C 0.079 3.921 16 H 0.044 0.956 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.101 4.101 20 C -0.080 4.080 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.850 5.850 24 H 0.014 0.986 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.109 0.891 29 H 0.047 0.953 30 H 0.041 0.959 31 H -0.017 1.017 32 H -0.018 1.018 33 H 0.270 0.730 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.020 0.980 42 H 0.348 0.652 43 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.247 -12.437 15.317 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.262 5.262 3 C -0.059 4.059 4 C -0.019 4.019 5 O -0.318 6.318 6 C 0.135 3.865 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.804 3.196 12 H -0.190 1.190 13 H -0.200 1.200 14 H -0.190 1.190 15 C -0.030 4.030 16 H 0.061 0.939 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.139 4.139 20 C -0.099 4.099 21 H 0.082 0.918 22 C -0.065 4.065 23 N -0.380 5.380 24 H 0.032 0.968 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.127 0.873 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.001 0.999 32 H 0.000 1.000 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.039 0.961 42 H 0.161 0.839 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.977 -12.889 15.110 21.402 hybrid contribution -1.781 1.412 -0.391 2.307 sum 6.196 -11.477 14.718 19.665 Atomic orbital electron populations 1.22537 0.87492 1.00731 1.01142 1.62101 1.08003 1.13243 1.42839 1.22127 1.01062 0.88315 0.94438 1.22572 0.83379 0.98292 0.97648 1.87831 1.23219 1.82682 1.38048 1.19772 0.95714 0.90397 0.80660 1.21334 0.91894 1.42113 1.02942 0.92030 1.25948 1.04430 0.94219 0.94571 1.70068 1.37615 1.42074 1.07283 0.85262 0.77572 0.78996 0.77751 1.19040 1.20042 1.19022 1.22635 0.95977 0.93392 0.90948 0.93853 1.22547 0.93226 0.98620 1.00788 1.22341 0.98306 0.95176 0.99817 1.21976 0.93539 0.97038 1.01372 1.21733 0.95657 0.93736 0.98824 0.91799 1.21982 0.95540 0.89526 0.99486 1.58718 1.38823 1.27194 1.13255 0.96774 0.91519 0.91206 0.94793 0.87271 0.93469 0.94097 0.99950 1.00040 0.92090 0.91358 0.90857 0.90992 0.90579 0.90928 0.92296 0.90965 0.96146 0.83904 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 7.97 127.69 1.02 1.98 16 2 N -0.54 -16.19 4.55 -890.73 -4.05 -20.24 16 3 C 0.07 2.07 5.42 86.30 0.47 2.54 16 4 C 0.06 2.24 6.23 71.98 0.45 2.68 16 5 O -0.40 -19.43 7.39 -148.98 -1.10 -20.53 16 6 C 0.21 11.95 5.69 71.23 0.41 12.36 16 7 C -0.55 -32.63 9.43 25.60 0.24 -32.39 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.01 0.39 5.46 84.66 0.46 0.86 16 10 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 11 Si 0.98 44.57 29.54 68.60 2.03 46.59 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 14 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 15 C 0.08 1.85 2.15 45.99 0.10 1.94 16 16 H 0.04 1.02 7.85 -2.39 -0.02 1.00 16 17 C -0.11 -2.23 5.50 31.91 0.18 -2.05 16 18 C -0.12 -1.91 6.84 31.69 0.22 -1.70 16 19 C -0.10 -1.86 6.27 31.32 0.20 -1.66 16 20 C -0.08 -1.73 1.96 -10.07 -0.02 -1.75 16 21 H 0.06 1.63 7.46 -2.39 -0.02 1.61 16 22 C 0.07 1.30 5.46 86.30 0.47 1.77 16 23 N -0.85 -14.64 9.32 -186.72 -1.74 -16.38 16 24 H 0.01 0.46 8.05 -2.39 -0.02 0.44 16 25 H 0.07 2.82 5.58 -2.39 -0.01 2.81 16 26 H 0.07 2.07 5.19 -2.38 -0.01 2.06 16 27 H 0.03 1.06 7.97 -2.38 -0.02 1.05 16 28 H 0.11 2.62 6.57 -2.39 -0.02 2.61 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 32 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 33 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.27 7.60 -2.39 -0.02 1.25 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.07 1.32 7.58 -2.39 -0.02 1.30 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.02 0.46 5.99 -2.39 -0.01 0.44 16 42 H 0.35 4.90 9.08 -89.70 -0.81 4.09 16 43 H 0.34 5.80 8.99 -89.69 -0.81 4.99 16 Total: -1.00 -65.43 331.10 -1.03 -66.47 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -0.63 Total: 15.80 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.18 Total: -15.41 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -5.51 Total: -92.92 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -1.10 Total: -20.53 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -65.43 -1.03 -66.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385224697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.968 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds