Wall clock time and date at job start Mon Mar 30 2020 04:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99670 * 2 1 4 4 C 1.52997 * 109.47011 * 66.05119 * 3 2 1 5 5 O 1.42895 * 109.47448 * 64.99845 * 4 3 2 6 6 C 1.42904 * 114.00176 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47175 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99706 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99811 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99858 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00162 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46987 * 89.99398 * 11 9 7 13 13 H 1.48497 * 109.46995 * 209.99506 * 11 9 7 14 14 H 1.48495 * 109.46867 * 329.99784 * 11 9 7 15 15 C 1.46901 * 110.99997 * 236.05119 * 2 1 3 16 16 C 1.53000 * 109.46769 * 303.94710 * 15 2 1 17 17 C 1.53005 * 109.46632 * 180.02562 * 16 15 2 18 18 C 1.52993 * 109.47212 * 60.00587 * 17 16 15 19 19 N 1.46906 * 109.47378 * 59.99438 * 18 17 16 20 20 C 1.52997 * 109.47024 * 299.99605 * 18 17 16 21 21 C 1.52997 * 109.47232 * 60.00042 * 20 18 17 22 22 H 1.09001 * 109.46506 * 183.95211 * 1 2 3 23 23 H 1.08994 * 109.46957 * 303.94567 * 1 2 3 24 24 H 1.08992 * 109.47449 * 63.95513 * 1 2 3 25 25 H 1.09001 * 109.46877 * 186.04769 * 3 2 1 26 26 H 1.09000 * 109.47278 * 306.04697 * 3 2 1 27 27 H 1.08998 * 109.46822 * 185.00069 * 4 3 2 28 28 H 1.09006 * 109.46978 * 304.99367 * 4 3 2 29 29 H 1.08993 * 109.47307 * 300.00259 * 6 5 4 30 30 H 1.09002 * 109.46717 * 60.00163 * 6 5 4 31 31 H 0.97005 * 120.00320 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.47401 * 63.95003 * 15 2 1 33 33 H 1.09001 * 109.47194 * 60.00475 * 16 15 2 34 34 H 1.08992 * 109.47399 * 300.00303 * 16 15 2 35 35 H 1.08992 * 109.47199 * 299.99759 * 17 16 15 36 36 H 1.09004 * 109.46832 * 180.02562 * 17 16 15 37 37 H 1.09000 * 109.47250 * 179.97438 * 18 17 16 38 38 H 1.00902 * 110.99567 * 179.97438 * 19 18 17 39 39 H 1.00901 * 111.00013 * 303.95621 * 19 18 17 40 40 H 1.09001 * 109.47375 * 179.97438 * 20 18 17 41 41 H 1.09002 * 109.47045 * 299.99984 * 20 18 17 42 42 H 1.09004 * 109.47261 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.47153 * 60.00008 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 8 2.2956 1.3976 2.3978 6 6 2.0223 1.9635 3.6813 7 6 2.7696 1.1933 4.7393 8 1 3.3914 0.3558 4.4596 9 6 2.6603 1.5586 6.0643 10 7 3.3129 0.8869 6.9876 11 14 1.5853 3.0078 6.5480 12 1 0.2062 2.5309 6.8231 13 1 2.1395 3.6500 7.7669 14 1 1.5559 3.9943 5.4385 15 6 1.9955 -0.7659 -1.1377 16 6 1.4261 -2.1856 -1.1038 17 6 1.9750 -2.9835 -2.2883 18 6 3.5011 -3.0438 -2.1993 19 7 3.8930 -3.6987 -0.9441 20 6 4.0705 -1.6241 -2.2332 21 6 3.5217 -0.8262 -1.0487 22 1 -0.3632 -1.0253 0.0708 23 1 -0.3633 0.5738 0.8525 24 1 -0.3634 0.4512 -0.9232 25 1 3.0797 1.3445 -0.1083 26 1 1.5610 1.9274 -0.8309 27 1 1.9438 3.1011 1.2831 28 1 0.5531 2.0058 1.4691 29 1 2.3431 3.0051 3.6949 30 1 0.9522 1.9102 3.8814 31 1 3.2357 1.1436 7.9198 32 1 1.7044 -0.2798 -2.0688 33 1 0.3388 -2.1427 -1.1667 34 1 1.7172 -2.6717 -0.1727 35 1 1.6842 -2.4976 -3.2196 36 1 1.5690 -3.9948 -2.2645 37 1 3.8921 -3.6126 -3.0430 38 1 4.8973 -3.7512 -0.8619 39 1 3.4888 -3.2273 -0.1488 40 1 5.1578 -1.6670 -2.1693 41 1 3.7797 -1.1382 -3.1645 42 1 3.9270 0.1854 -1.0730 43 1 3.8124 -1.3122 -0.1173 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385265289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:16 Heat of formation + Delta-G solvation = -48.866160 kcal Electronic energy + Delta-G solvation = -20021.744865 eV Core-core repulsion = 17101.555514 eV Total energy + Delta-G solvation = -2920.189351 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.76928 -37.38919 -35.93176 -32.65848 -31.87579 -31.12347 -29.45588 -27.97083 -27.42980 -25.26257 -22.64660 -21.85513 -21.73057 -20.35244 -19.09842 -16.90143 -16.72059 -15.99013 -15.68564 -15.18536 -14.94477 -14.42352 -14.35444 -14.06272 -13.88085 -13.51437 -13.20671 -12.71422 -12.52274 -12.45297 -12.31491 -11.95710 -11.89198 -11.44126 -11.34352 -11.16266 -10.88832 -10.78529 -10.65212 -10.42753 -10.24398 -10.05280 -9.81911 -9.12088 -8.78038 -8.71017 -8.39859 -8.07384 -6.07455 -4.05607 3.26746 3.33519 3.35044 3.92216 4.38739 4.47864 4.59690 4.68185 4.75531 4.91320 5.07943 5.14682 5.23942 5.29711 5.30823 5.39909 5.42625 5.44857 5.52773 5.63797 5.66324 5.75434 5.81397 5.90601 5.92932 5.93487 6.10037 6.13052 6.16296 6.20157 6.27668 6.39949 6.65235 7.04805 7.13444 7.24684 7.28116 7.42898 7.65071 8.10455 8.73660 9.05696 9.52514 11.05759 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.027601 B = 0.004478 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.216722 B = 6251.845387 C = 6720.935947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.523 5.523 3 C 0.056 3.944 4 C 0.062 3.938 5 O -0.363 6.363 6 C 0.168 3.832 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.072 3.928 10 N -0.897 5.897 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.088 3.912 16 C -0.117 4.117 17 C -0.110 4.110 18 C 0.091 3.909 19 N -0.847 5.847 20 C -0.153 4.153 21 C -0.117 4.117 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.017 0.983 25 H 0.085 0.915 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.038 0.962 29 H -0.001 1.001 30 H -0.004 1.004 31 H 0.266 0.734 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.338 0.662 39 H 0.348 0.652 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 -3.103 -20.454 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.247 5.247 3 C -0.071 4.071 4 C -0.016 4.016 5 O -0.282 6.282 6 C 0.092 3.908 7 C -0.552 4.552 8 H 0.101 0.899 9 C -0.130 4.130 10 N -0.536 5.536 11 Si 0.702 3.298 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.192 1.192 15 C -0.020 4.020 16 C -0.155 4.155 17 C -0.148 4.148 18 C -0.021 4.021 19 N -0.378 5.378 20 C -0.193 4.193 21 C -0.155 4.155 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.035 0.965 25 H 0.103 0.897 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.017 0.983 30 H 0.013 0.987 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.151 0.849 39 H 0.164 0.836 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.361 -4.139 -20.110 20.805 hybrid contribution -0.577 2.470 -0.057 2.537 sum -3.939 -1.669 -20.168 20.617 Atomic orbital electron populations 1.22473 0.87849 1.02367 1.00034 1.61889 1.07296 1.13378 1.42110 1.22205 1.01322 0.88215 0.95383 1.22348 0.96195 0.94638 0.88428 1.88006 1.69306 1.56280 1.14623 1.20577 0.94980 0.93710 0.81508 1.20892 1.28634 1.16214 0.89441 0.89931 1.24761 0.95602 0.96563 0.96051 1.69877 1.42353 1.40332 1.00989 0.86865 0.81159 0.83332 0.78463 1.19980 1.20843 1.19210 1.21611 0.94895 0.94197 0.91278 1.21658 1.00022 0.94334 0.99477 1.21543 0.94599 1.00535 0.98147 1.21400 0.95447 0.91989 0.93259 1.59023 1.15338 1.58805 1.04654 1.22356 1.00294 0.97627 0.99031 1.21647 0.94432 1.00629 0.98782 0.91091 0.90970 0.96462 0.89690 0.94539 0.94332 0.94421 0.98326 0.98671 0.92446 0.94940 0.91776 0.90332 0.92055 0.91120 0.90633 0.84944 0.83597 0.91901 0.91892 0.91601 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.91 60.07 0.54 0.81 16 2 N -0.52 -7.66 4.58 -234.88 -1.08 -8.73 16 3 C 0.06 0.83 5.16 -3.82 -0.02 0.81 16 4 C 0.06 1.11 6.00 37.16 0.22 1.33 16 5 O -0.36 -8.61 10.27 -35.23 -0.36 -8.97 16 6 C 0.17 4.35 4.76 36.01 0.17 4.52 16 7 C -0.51 -15.53 9.99 -34.44 -0.34 -15.87 16 8 H 0.08 2.73 8.06 -52.49 -0.42 2.31 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 11 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.35 6.54 56.52 0.37 -5.99 16 15 C 0.09 1.06 1.95 -67.71 -0.13 0.93 16 16 C -0.12 -1.29 4.58 -26.73 -0.12 -1.42 16 17 C -0.11 -1.04 5.64 -26.73 -0.15 -1.19 16 18 C 0.09 0.86 3.69 -67.71 -0.25 0.61 16 19 N -0.85 -8.87 9.12 -4.67 -0.04 -8.91 16 20 C -0.15 -1.45 5.61 -26.73 -0.15 -1.60 16 21 C -0.12 -1.38 4.74 -26.73 -0.13 -1.51 16 22 H 0.07 0.86 6.23 -51.93 -0.32 0.54 16 23 H 0.07 1.02 6.21 -51.93 -0.32 0.70 16 24 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.08 1.27 5.83 -51.93 -0.30 0.97 16 26 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.64 6.26 -51.93 -0.33 0.32 16 29 H 0.00 -0.02 7.20 -51.93 -0.37 -0.40 16 30 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 31 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.68 6.35 -51.93 -0.33 0.35 16 34 H 0.08 1.00 6.57 -51.93 -0.34 0.66 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.34 3.17 9.04 -39.29 -0.36 2.82 16 39 H 0.35 4.07 5.44 -39.29 -0.21 3.86 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.81 6.20 -51.93 -0.32 0.48 16 43 H 0.08 1.03 6.76 -51.93 -0.35 0.68 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -31.85 321.92 -8.33 -40.19 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.35 Total: 2.33 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.46 Total: -10.54 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.34 Total: -44.86 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.36 Total: -8.97 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.85 -8.33 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385265289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.680 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds