Wall clock time and date at job start Mon Mar 30 2020 04:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46846 * 111.00121 * 2 1 4 4 C 1.53030 * 109.52435 * 174.16395 * 3 2 1 5 5 C 1.53203 * 109.30370 * 59.17688 * 4 3 2 6 6 C 1.53123 * 109.11533 * 302.37368 * 5 4 3 7 7 H 1.09002 * 109.50371 * 297.67165 * 6 5 4 8 8 C 1.53002 * 109.50117 * 177.59478 * 6 5 4 9 9 N 1.46905 * 109.46874 * 175.07884 * 8 6 5 10 10 C 1.46896 * 110.99757 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.46829 * 179.97438 * 10 9 8 12 12 O 1.42896 * 109.46866 * 65.00822 * 11 10 9 13 13 C 1.42908 * 113.99920 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47041 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99944 * 359.97438 * 14 13 12 16 16 C 1.37869 * 119.99794 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00423 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99986 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46763 * 60.00128 * 18 16 14 20 20 H 1.48497 * 109.47106 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47089 * 300.00113 * 18 16 14 22 22 C 1.46856 * 110.99619 * 235.79117 * 2 1 3 23 23 H 1.09000 * 109.47170 * 184.20873 * 1 2 3 24 24 H 1.09003 * 109.47055 * 304.21119 * 1 2 3 25 25 H 1.09002 * 109.46954 * 64.21044 * 1 2 3 26 26 H 1.09004 * 109.46012 * 294.17710 * 3 2 1 27 27 H 1.08994 * 109.46057 * 54.14289 * 3 2 1 28 28 H 1.08997 * 109.50569 * 179.12357 * 4 3 2 29 29 H 1.09007 * 109.50504 * 299.19535 * 4 3 2 30 30 H 1.08994 * 109.57907 * 182.46159 * 5 4 3 31 31 H 1.08997 * 109.51203 * 62.24423 * 5 4 3 32 32 H 1.09001 * 109.47096 * 295.07690 * 8 6 5 33 33 H 1.08997 * 109.47298 * 55.07751 * 8 6 5 34 34 H 1.00903 * 110.99787 * 56.04268 * 9 8 6 35 35 H 1.08997 * 109.47765 * 300.00145 * 10 9 8 36 36 H 1.09004 * 109.47220 * 60.00258 * 10 9 8 37 37 H 1.09007 * 109.47041 * 185.00205 * 11 10 9 38 38 H 1.08997 * 109.47130 * 305.00217 * 11 10 9 39 39 H 1.08995 * 109.46569 * 299.98966 * 13 12 11 40 40 H 1.08992 * 109.46886 * 59.99477 * 13 12 11 41 41 H 0.97001 * 120.00220 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.46462 * 65.82793 * 22 2 1 43 43 H 1.09001 * 109.45242 * 305.84772 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1197 0.5366 -1.0149 6 6 3.5181 -0.8715 -1.0209 7 1 3.7813 -1.3837 -0.0954 8 6 4.0679 -1.6567 -2.2134 9 7 3.5833 -3.0422 -2.1528 10 6 4.0918 -3.8277 -3.2852 11 6 3.5673 -5.2618 -3.1874 12 8 2.1462 -5.2603 -3.3363 13 6 1.5524 -6.5580 -3.2597 14 6 0.0596 -6.4381 -3.4282 15 1 -0.3907 -5.4679 -3.5783 16 6 -0.7311 -7.5668 -3.3907 17 7 -0.1828 -8.7482 -3.2085 18 14 -2.5816 -7.4182 -3.5988 19 1 -2.8840 -6.8121 -4.9203 20 1 -3.1984 -8.7667 -3.5206 21 1 -3.1333 -6.5577 -2.5216 22 6 1.9952 -0.7708 -1.1339 23 1 -0.3633 -1.0249 0.0754 24 1 -0.3633 0.5778 0.8499 25 1 -0.3633 0.4471 -0.9253 26 1 1.7325 1.8608 -0.9376 27 1 1.5635 1.9257 0.8329 28 1 3.9099 2.3512 0.1310 29 1 3.7814 0.8574 1.0909 30 1 5.2006 0.4704 -0.8914 31 1 3.8895 1.0350 -1.9565 32 1 3.7297 -1.1937 -3.1404 33 1 5.1574 -1.6512 -2.1809 34 1 2.5753 -3.0714 -2.1165 35 1 3.7534 -3.3797 -4.2194 36 1 5.1815 -3.8373 -3.2605 37 1 4.0147 -5.8668 -3.9761 38 1 3.8305 -5.6794 -2.2156 39 1 1.9578 -7.1901 -4.0497 40 1 1.7737 -7.0020 -2.2893 41 1 -0.7391 -9.5424 -3.1825 42 1 1.7325 -0.2709 -2.0661 43 1 1.5633 -1.7716 -1.1241 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385844069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:29 Heat of formation + Delta-G solvation = -84.271688 kcal Electronic energy + Delta-G solvation = -19372.766204 eV Core-core repulsion = 16451.041554 eV Total energy + Delta-G solvation = -2921.724650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23983 -38.84407 -36.94538 -34.99786 -34.39699 -32.47075 -30.11555 -28.63194 -27.74573 -25.77249 -24.53642 -23.80274 -22.62794 -22.20011 -20.58729 -18.65262 -17.59549 -17.07302 -16.79511 -16.67077 -16.35201 -15.86563 -15.55341 -15.38542 -15.14834 -15.04405 -14.29277 -14.08555 -13.74263 -13.53352 -13.42253 -13.15161 -13.13252 -12.87267 -12.69898 -12.57202 -12.40209 -12.19141 -12.02476 -11.89386 -11.55298 -11.30733 -11.20895 -11.18252 -10.87290 -10.24315 -9.36432 -9.30582 -8.32730 -6.45565 1.38980 1.43820 1.52232 2.33748 2.96312 3.01080 3.17789 3.23423 3.79162 3.90203 3.99792 4.14779 4.20017 4.33246 4.35402 4.43833 4.49175 4.53727 4.56067 4.60590 4.65832 4.78044 4.82015 4.83720 4.87238 4.90447 4.94525 4.97835 5.00496 5.09842 5.17234 5.22691 5.32581 5.51358 5.53223 5.94618 6.07714 6.11880 6.16844 6.37761 6.52104 6.80153 7.26393 8.79528 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.020244 B = 0.004260 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.815684 B = 6570.968049 C = 7774.140087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.555 5.555 3 C 0.051 3.949 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.076 4.076 7 H 0.073 0.927 8 C 0.068 3.932 9 N -0.699 5.699 10 C 0.075 3.925 11 C 0.053 3.947 12 O -0.410 6.410 13 C 0.212 3.788 14 C -0.549 4.549 15 H 0.062 0.938 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.983 3.017 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.265 1.265 22 C 0.061 3.939 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.024 0.976 26 H 0.030 0.970 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.027 0.973 33 H 0.087 0.913 34 H 0.341 0.659 35 H 0.032 0.968 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.042 0.958 39 H -0.015 1.015 40 H -0.016 1.016 41 H 0.271 0.729 42 H 0.025 0.975 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.820 20.740 4.636 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.280 5.280 3 C -0.076 4.076 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.095 4.095 7 H 0.092 0.908 8 C -0.062 4.062 9 N -0.331 5.331 10 C -0.054 4.054 11 C -0.024 4.024 12 O -0.330 6.330 13 C 0.137 3.863 14 C -0.587 4.587 15 H 0.080 0.920 16 C -0.191 4.191 17 N -0.570 5.570 18 Si 0.805 3.195 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.190 1.190 22 C -0.068 4.068 23 H 0.078 0.922 24 H 0.101 0.899 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.106 0.894 34 H 0.159 0.841 35 H 0.050 0.950 36 H 0.125 0.875 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.003 0.997 40 H 0.002 0.998 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.333 20.284 5.476 22.602 hybrid contribution -1.556 -0.156 -1.565 2.213 sum 6.777 20.128 3.911 21.595 Atomic orbital electron populations 1.22385 0.86864 1.02296 1.00913 1.61915 1.08139 1.14624 1.43286 1.22207 0.96508 0.88277 1.00637 1.21585 0.93624 1.00981 0.98859 1.21599 1.00699 0.93730 0.98853 1.21130 0.93226 0.96427 0.98698 0.90820 1.22028 1.00740 0.86951 0.96451 1.60574 1.16127 1.12355 1.44028 1.21923 1.00412 0.91055 0.92043 1.22628 0.82150 0.97988 0.99647 1.87746 1.20038 1.31369 1.93834 1.19789 0.93059 0.80107 0.93394 1.21353 0.91879 0.94309 1.51150 0.91994 1.25961 1.05045 0.94166 0.93976 1.70066 1.38238 0.98946 1.49744 0.85244 0.77124 0.77770 0.79335 1.18990 1.19932 1.18995 1.22099 0.96135 0.97472 0.91046 0.92177 0.89876 0.95718 0.95170 0.89807 0.89466 0.91563 0.90199 0.92031 0.95488 0.89446 0.84085 0.94981 0.87534 0.93248 0.93927 0.99688 0.99814 0.92009 0.95672 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.59 127.69 1.22 1.73 16 2 N -0.56 -12.87 4.91 -922.56 -4.53 -17.40 16 3 C 0.05 0.92 5.46 86.32 0.47 1.39 16 4 C -0.11 -1.73 6.09 30.67 0.19 -1.55 16 5 C -0.11 -1.83 5.29 30.70 0.16 -1.66 16 6 C -0.08 -1.67 2.56 -10.74 -0.03 -1.70 16 7 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 8 C 0.07 1.56 5.15 86.30 0.44 2.00 16 9 N -0.70 -21.01 6.50 -513.87 -3.34 -24.35 16 10 C 0.07 2.23 6.10 86.31 0.53 2.76 16 11 C 0.05 2.03 6.28 71.98 0.45 2.48 16 12 O -0.41 -20.31 9.85 -148.98 -1.47 -21.78 16 13 C 0.21 12.16 5.69 71.24 0.41 12.57 16 14 C -0.55 -33.18 9.43 25.60 0.24 -32.94 16 15 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 16 C 0.01 0.41 5.46 84.65 0.46 0.88 16 17 N -0.93 -56.71 13.29 21.44 0.28 -56.43 16 18 Si 0.98 44.72 29.54 68.60 2.03 46.75 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 C 0.06 1.53 4.50 86.32 0.39 1.92 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 25 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.11 8.14 -2.38 -0.02 1.10 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.34 11.84 6.57 -89.69 -0.59 11.25 16 35 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 1.73 6.70 -2.39 -0.02 1.71 16 Total: -1.00 -66.41 341.00 -1.73 -68.14 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.35 Total: 17.18 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 4.94 Total: -12.12 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -7.59 Total: -98.18 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.47 Total: -21.78 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -66.41 -1.73 -68.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385844069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.130 kcal (2) G-P(sol) polarization free energy of solvation -66.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds