Wall clock time and date at job start Mon Mar 30 2020 04:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00174 * 2 1 4 4 H 1.48497 * 109.47279 * 240.00299 * 3 2 1 5 5 H 1.48501 * 109.47184 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46936 * 120.00501 * 3 2 1 7 7 C 1.37883 * 119.99567 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00228 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.38998 * 120.00066 * 179.97438 * 10 9 7 12 12 C 1.39115 * 119.69629 * 0.02562 * 11 10 9 13 13 C 1.38335 * 119.12580 * 180.27630 * 12 11 10 14 14 N 1.48008 * 120.74059 * 179.74903 * 13 12 11 15 15 O 1.21805 * 120.00008 * 359.97438 * 14 13 12 16 16 O 1.21805 * 120.00205 * 180.02562 * 14 13 12 17 17 C 1.38822 * 118.52069 * 359.52543 * 13 12 11 18 18 C 1.38197 * 119.31855 * 0.45207 * 17 13 12 19 19 Cl 1.73595 * 119.59084 * 179.76789 * 18 17 13 20 20 N 1.32066 * 120.82027 * 359.79320 * 18 17 13 21 21 H 0.97000 * 119.99600 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47047 * 59.99974 * 9 7 2 23 23 H 1.09004 * 109.47253 * 300.00200 * 9 7 2 24 24 H 0.96999 * 119.99779 * 0.02562 * 10 9 7 25 25 H 1.08002 * 120.43445 * 359.97438 * 12 11 10 26 26 H 1.07997 * 120.34129 * 180.19932 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7395 -4.9232 0.0000 12 6 0.3705 -5.1701 0.0000 13 6 -0.0777 -6.4789 0.0064 14 7 -1.5263 -6.7824 0.0122 15 8 -2.3388 -5.8749 0.0118 16 8 -1.9060 -7.9398 0.0182 17 6 0.8615 -7.5011 0.0024 18 6 2.2066 -7.1842 0.0019 19 17 3.3871 -8.4570 0.0031 20 7 2.6052 -5.9252 0.0009 21 1 -0.4849 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 3.1566 -3.4355 -0.0002 25 1 -0.3332 -4.3508 0.0000 26 1 0.5442 -8.5335 0.0040 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389850708.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:18 Heat of formation + Delta-G solvation = 12.987878 kcal Electronic energy + Delta-G solvation = -16054.915677 eV Core-core repulsion = 12969.359394 eV Total energy + Delta-G solvation = -3085.556283 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.035 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.49146 -41.64644 -38.20915 -37.83313 -37.17294 -34.91871 -34.33339 -31.46375 -28.85854 -28.46063 -25.56820 -24.05579 -23.42199 -20.87876 -20.12215 -19.08316 -18.83944 -18.01546 -17.36181 -17.28530 -16.62808 -16.30148 -16.19030 -15.24382 -14.77035 -14.17377 -13.70184 -13.17842 -12.94228 -12.87884 -12.74733 -12.67448 -12.50957 -12.41635 -12.22596 -12.07329 -11.59886 -11.27003 -11.12053 -10.66132 -9.02955 -8.35309 -6.49886 -1.50565 -0.39046 -0.12668 0.15482 0.49752 1.43027 1.44209 1.52627 1.97638 2.14429 2.37421 3.01467 3.21726 3.26962 3.49477 3.63953 3.90950 4.40329 4.54497 4.85756 5.04385 5.11306 5.40327 5.63891 5.74598 6.33133 6.38052 6.48515 6.78738 7.22532 8.75378 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.005444 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.714407 B = 5142.408790 C = 6419.973403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.562 4.562 8 H 0.076 0.924 9 C 0.263 3.737 10 N -0.682 5.682 11 C 0.432 3.568 12 C -0.187 4.187 13 C 0.058 3.942 14 N 0.025 4.975 15 O -0.188 6.188 16 O -0.110 6.110 17 C -0.170 4.170 18 C 0.238 3.762 19 Cl 0.018 6.982 20 N -0.525 5.525 21 H 0.271 0.729 22 H 0.013 0.987 23 H 0.012 0.988 24 H 0.413 0.587 25 H 0.155 0.845 26 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 -14.090 0.001 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.600 4.600 8 H 0.094 0.906 9 C 0.141 3.859 10 N -0.308 5.308 11 C 0.191 3.809 12 C -0.215 4.215 13 C -0.032 4.032 14 N 0.548 4.452 15 O -0.395 6.395 16 O -0.339 6.339 17 C -0.195 4.195 18 C 0.070 3.930 19 Cl 0.046 6.954 20 N -0.247 5.247 21 H 0.080 0.920 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.250 0.750 25 H 0.173 0.827 26 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.512 -13.386 -0.003 14.476 hybrid contribution -0.676 0.779 0.002 1.031 sum 4.836 -12.607 -0.001 13.503 Atomic orbital electron populations 1.70038 1.07663 1.28863 1.49233 1.25819 0.95748 1.03162 0.93774 0.85341 0.78100 0.77436 0.79230 1.19127 1.20886 1.19138 1.21437 0.94200 0.90594 1.53740 0.90599 1.19008 0.88347 0.82723 0.95811 1.45306 1.11232 1.00473 1.73777 1.17957 0.86824 0.86424 0.89735 1.21313 0.96578 0.96625 1.07016 1.20906 0.80390 0.95079 1.06839 1.43554 1.03286 1.00611 0.97740 1.94645 1.49423 1.40235 1.55153 1.94482 1.84089 1.05195 1.50168 1.21335 0.89591 1.01795 1.06829 1.21139 0.88295 0.88233 0.95287 1.98436 1.57038 1.43899 1.95986 1.66573 1.38908 0.98993 1.20230 0.91973 0.96953 0.96971 0.75004 0.82731 0.78731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.64 13.29 21.45 0.28 -50.35 15 2 C 0.02 0.83 5.46 84.66 0.46 1.29 15 3 Si 0.97 40.22 29.54 68.60 2.03 42.25 15 4 H -0.27 -10.61 7.11 99.48 0.71 -9.90 15 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 15 6 H -0.27 -10.61 7.11 99.48 0.71 -9.91 15 7 C -0.56 -28.10 9.28 25.60 0.24 -27.86 15 8 H 0.08 3.57 7.60 -2.91 -0.02 3.54 15 9 C 0.26 12.25 4.64 85.63 0.40 12.65 15 10 N -0.68 -26.08 5.72 -348.81 -2.00 -28.08 15 11 C 0.43 15.02 7.65 133.06 1.02 16.04 15 12 C -0.19 -6.45 8.85 22.50 0.20 -6.26 15 13 C 0.06 1.74 6.89 36.54 0.25 1.99 15 14 N 0.03 0.81 4.45 -46.08 -0.21 0.60 15 15 O -0.19 -6.74 18.54 18.88 0.35 -6.39 15 16 O -0.11 -3.18 18.54 18.88 0.35 -2.83 15 17 C -0.17 -4.15 9.39 22.40 0.21 -3.94 15 18 C 0.24 6.15 7.27 84.65 0.62 6.77 15 19 Cl 0.02 0.35 29.10 -2.72 -0.08 0.28 15 20 N -0.52 -16.35 10.37 -184.14 -1.91 -18.26 15 21 H 0.27 14.14 8.31 -92.71 -0.77 13.37 15 22 H 0.01 0.63 7.93 -2.38 -0.02 0.61 15 23 H 0.01 0.62 7.93 -2.38 -0.02 0.60 15 24 H 0.41 14.75 8.44 -92.71 -0.78 13.97 15 25 H 0.16 5.88 6.34 -2.91 -0.02 5.86 15 26 H 0.20 3.51 7.70 -2.91 -0.02 3.49 15 Total: -1.00 -54.04 264.55 2.68 -51.36 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.47 Total: 10.74 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 3.39 Total: 0.68 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -3.83 Total: -96.09 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.70 Total: -9.21 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.28 kcal Total: -54.04 2.68 -51.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389850708.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.351 kcal (2) G-P(sol) polarization free energy of solvation -54.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds