Wall clock time and date at job start Mon Mar 30 2020 04:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47385 * 2 1 4 4 C 1.42899 * 113.99782 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.64876 * 26.85326 * 4 3 2 6 6 C 1.54936 * 110.72648 * 263.49873 * 4 3 2 7 7 N 1.48533 * 103.22827 * 204.23478 * 6 4 3 8 8 C 1.46901 * 110.99670 * 159.72645 * 7 6 4 9 9 C 1.52992 * 109.47859 * 52.60024 * 8 7 6 10 10 C 1.52997 * 109.47482 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.47895 * 105.82149 * 39.20667 * 7 6 4 20 20 C 1.53987 * 107.05962 * 334.67044 * 19 7 6 21 21 H 1.09001 * 110.31266 * 120.14123 * 20 19 7 22 22 C 1.53002 * 110.31207 * 242.21261 * 20 19 7 23 23 N 1.46905 * 109.46814 * 293.54560 * 22 20 19 24 24 H 1.08993 * 109.47512 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47230 * 300.00271 * 1 2 3 26 26 H 1.09003 * 109.47001 * 59.99759 * 1 2 3 27 27 H 1.08997 * 109.47230 * 239.99729 * 2 1 3 28 28 H 1.09003 * 109.47001 * 120.00240 * 2 1 3 29 29 H 1.09002 * 110.66743 * 85.79285 * 6 4 3 30 30 H 1.08998 * 110.66610 * 322.66903 * 6 4 3 31 31 H 1.09002 * 109.46980 * 292.59683 * 8 7 6 32 32 H 1.09001 * 109.46628 * 172.60105 * 8 7 6 33 33 H 1.09002 * 109.47103 * 59.99734 * 9 8 7 34 34 H 1.08998 * 109.46862 * 300.00546 * 9 8 7 35 35 H 1.09002 * 109.47153 * 59.99783 * 10 9 8 36 36 H 1.09001 * 109.46832 * 299.99974 * 10 9 8 37 37 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 38 38 H 1.08994 * 109.91810 * 94.02471 * 19 7 6 39 39 H 1.08999 * 109.91451 * 215.12169 * 19 7 6 40 40 H 1.09000 * 109.47271 * 53.54418 * 22 20 19 41 41 H 1.08998 * 109.47156 * 173.54959 * 22 20 19 42 42 H 1.00903 * 111.00008 * 56.04398 * 23 22 20 43 43 H 1.00891 * 110.99968 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8860 0.5831 -0.4598 6 6 3.9640 1.6670 1.4405 7 7 5.2681 2.3448 1.2260 8 6 5.7030 3.0462 2.4413 9 6 5.6776 2.0782 3.6258 10 6 6.1311 2.8086 4.8913 11 6 6.1055 1.8552 6.0581 12 1 5.7971 0.8306 5.9116 13 6 6.4770 2.2907 7.3125 14 7 6.8531 3.5382 7.4908 15 14 6.4459 1.1087 8.7586 16 1 7.3616 -0.0287 8.4881 17 1 6.8860 1.8177 9.9869 18 1 5.0649 0.5975 8.9506 19 6 5.0503 3.2957 0.1144 20 6 3.8777 2.7515 -0.7224 21 1 3.0618 3.4739 -0.7452 22 6 4.3431 2.4324 -2.1445 23 7 4.7123 3.6782 -2.8300 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 4.1060 0.7085 1.9397 30 1 3.2891 2.3036 2.0128 31 1 5.0303 3.8807 2.6396 32 1 6.7165 3.4220 2.3008 33 1 6.3503 1.2437 3.4275 34 1 4.6642 1.7023 3.7661 35 1 5.4588 3.6433 5.0898 36 1 7.1447 3.1841 4.7506 37 1 7.1140 3.8446 8.3733 38 1 4.7985 4.2792 0.5109 39 1 5.9488 3.3617 -0.4991 40 1 5.2079 1.7701 -2.1039 41 1 3.5360 1.9432 -2.6898 42 1 5.4141 4.1830 -2.3095 43 1 5.0238 3.4941 -3.7718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405860217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:05 Heat of formation + Delta-G solvation = -61.228677 kcal Electronic energy + Delta-G solvation = -19485.171996 eV Core-core repulsion = 16564.446566 eV Total energy + Delta-G solvation = -2920.725430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.74021 -37.26781 -35.46991 -33.68277 -32.17348 -31.19807 -29.55181 -28.24679 -26.39891 -24.13882 -23.19139 -22.44996 -21.32989 -20.04535 -19.64483 -17.23555 -16.57721 -16.18185 -15.77223 -15.29379 -14.85575 -14.72918 -14.41168 -14.14662 -13.64433 -13.50840 -13.22397 -12.74538 -12.67845 -12.38812 -12.19130 -11.93422 -11.52742 -11.47120 -11.27559 -11.15402 -10.97592 -10.76778 -10.66372 -10.51285 -10.40460 -9.70024 -9.51738 -9.32355 -9.05154 -8.92563 -8.32720 -8.20878 -5.98059 -4.00278 3.34506 3.38621 3.41088 3.42876 4.27888 4.33606 4.48763 4.56568 4.64152 4.82582 4.91274 5.06641 5.17433 5.22243 5.24533 5.37628 5.38764 5.47875 5.57009 5.69757 5.74038 5.76085 5.81387 5.84882 5.91377 6.00105 6.06646 6.09968 6.30128 6.66177 6.76176 6.86360 6.96758 7.15540 7.18444 7.26922 7.33722 7.69168 7.84314 8.02000 8.45158 9.06476 9.63518 11.13409 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.004128 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.924916 B = 6781.705520 C = 7870.082545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.378 6.378 4 C 0.090 3.910 5 H 0.075 0.925 6 C 0.020 3.980 7 N -0.515 5.515 8 C 0.047 3.953 9 C -0.109 4.109 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.040 3.960 20 C -0.095 4.095 21 H 0.093 0.907 22 C 0.073 3.927 23 N -0.851 5.851 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.342 0.658 43 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 -4.214 -19.686 21.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.296 6.296 4 C 0.031 3.969 5 H 0.093 0.907 6 C -0.109 4.109 7 N -0.240 5.240 8 C -0.080 4.080 9 C -0.146 4.146 10 C -0.015 4.015 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.088 4.088 20 C -0.115 4.115 21 H 0.112 0.888 22 C -0.058 4.058 23 N -0.381 5.381 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.155 0.845 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.040 -4.091 -19.567 21.546 hybrid contribution 0.570 -0.596 1.116 1.388 sum -7.470 -4.687 -18.451 20.450 Atomic orbital electron populations 1.21740 0.93845 1.02132 1.03117 1.22511 0.95510 0.83913 1.00113 1.87921 1.20499 1.26334 1.94888 1.23020 0.80748 0.97742 0.95432 0.90740 1.23595 0.90628 1.00531 0.96122 1.64822 1.26061 1.26583 1.06537 1.22499 1.00144 0.96147 0.89202 1.21707 1.00618 0.97997 0.94326 1.19065 0.96467 0.95535 0.90468 1.21206 1.44549 0.96858 0.93170 0.92784 1.25023 0.95370 0.95137 0.98927 1.69956 1.45369 1.15335 1.22916 0.86660 0.78435 0.81075 0.81833 1.20230 1.21287 1.20270 1.22894 0.97104 0.95243 0.93546 1.22100 0.98287 0.97308 0.93779 0.88831 1.21787 0.99281 0.90936 0.93760 1.58732 1.49872 1.23014 1.06527 0.91211 0.91730 0.92007 0.93555 0.93108 0.89657 0.92497 0.94934 0.90882 0.92647 0.93400 0.96793 0.96553 0.92972 0.93251 0.90832 0.95005 0.91030 0.84529 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.15 0.38 -0.92 16 2 C 0.06 0.57 6.49 37.15 0.24 0.81 16 3 O -0.38 -4.83 10.08 -35.23 -0.36 -5.19 16 4 C 0.09 1.12 3.10 -24.87 -0.08 1.04 16 5 H 0.07 0.85 7.55 -51.93 -0.39 0.46 16 6 C 0.02 0.29 4.82 -1.90 -0.01 0.28 16 7 N -0.52 -7.96 5.40 -230.47 -1.24 -9.20 16 8 C 0.05 0.85 5.03 -3.83 -0.02 0.83 16 9 C -0.11 -2.31 4.81 -26.74 -0.13 -2.43 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 15 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.04 0.52 5.89 -2.76 -0.02 0.50 16 20 C -0.10 -1.12 3.01 -89.26 -0.27 -1.39 16 21 H 0.09 1.22 8.07 -51.93 -0.42 0.80 16 22 C 0.07 0.72 5.97 -3.82 -0.02 0.69 16 23 N -0.85 -7.55 9.62 -10.37 -0.10 -7.65 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.40 8.11 -51.93 -0.42 -0.02 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.29 7.66 -51.93 -0.40 0.89 16 30 H 0.06 0.93 8.00 -51.93 -0.42 0.51 16 31 H 0.03 0.59 7.81 -51.93 -0.41 0.19 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.00 6.79 -51.93 -0.35 0.65 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.05 0.66 7.57 -51.93 -0.39 0.27 16 39 H 0.07 0.86 6.86 -51.93 -0.36 0.50 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.34 2.86 7.64 -39.29 -0.30 2.56 16 43 H 0.34 2.36 9.08 -39.30 -0.36 2.00 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -31.01 340.81 -9.29 -40.31 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.98 Total: 0.17 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -0.47 Total: -13.89 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.61 Total: -43.44 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.36 Total: -5.19 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.01 -9.29 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405860217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.920 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds