Wall clock time and date at job start Mon Mar 30 2020 04:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99737 * 2 1 4 4 H 1.48495 * 109.47689 * 270.00329 * 3 2 1 5 5 H 1.48501 * 109.47328 * 30.00682 * 3 2 1 6 6 H 1.48510 * 109.47019 * 150.00055 * 3 2 1 7 7 C 1.37880 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99732 * 359.97438 * 7 2 1 9 9 S 1.76194 * 119.99851 * 180.02562 * 7 2 1 10 10 O 1.42095 * 103.00426 * 66.14212 * 9 7 2 11 11 C 1.81404 * 103.00094 * 179.97438 * 9 7 2 12 12 C 1.50698 * 109.47096 * 179.97438 * 11 9 7 13 13 O 1.21283 * 120.00472 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 11 16 16 C 1.50703 * 109.47138 * 180.28062 * 15 14 12 17 17 C 1.34513 * 125.79287 * 89.71498 * 16 15 14 18 18 C 1.41377 * 106.84247 * 179.89020 * 17 16 15 19 19 C 1.34516 * 106.84199 * 0.37090 * 18 17 16 20 20 O 1.34302 * 125.78624 * 270.02476 * 16 15 14 21 21 H 0.96998 * 120.00204 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46580 * 59.99963 * 11 9 7 23 23 H 1.08993 * 109.46791 * 300.00356 * 11 9 7 24 24 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 25 25 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 26 26 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 27 27 H 1.08004 * 126.57894 * 0.02936 * 17 16 15 28 28 H 1.08000 * 126.58321 * 180.16576 * 18 17 16 29 29 H 1.08000 * 125.79416 * 179.74462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7665 -1.1940 0.0001 10 8 4.0858 -0.6348 1.2669 11 6 4.1747 -2.9615 -0.0001 12 6 5.6721 -3.1312 -0.0002 13 8 6.3931 -2.1559 0.0004 14 7 6.2102 -4.3669 0.0002 15 6 7.6658 -4.5320 -0.0060 16 6 8.0049 -6.0003 -0.0112 17 6 8.1723 -6.7652 -1.1049 18 6 8.4797 -8.0682 -0.6505 19 6 8.4736 -8.0236 0.6939 20 8 8.1854 -6.7685 1.0755 21 1 -0.4850 0.8400 0.0004 22 1 3.7561 -3.4308 -0.8904 23 1 3.7554 -3.4312 0.8896 24 1 5.6336 -5.1470 0.0001 25 1 8.0813 -4.0600 -0.8965 26 1 8.0883 -4.0647 0.8835 27 1 8.0901 -6.4449 -2.1331 28 1 8.6778 -8.9341 -1.2648 29 1 8.6672 -8.8558 1.3544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526868273.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:37 Heat of formation + Delta-G solvation = -57.885298 kcal Electronic energy + Delta-G solvation = -16102.109502 eV Core-core repulsion = 13119.063977 eV Total energy + Delta-G solvation = -2983.045525 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.055 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.83852 -39.24443 -34.97634 -33.90984 -33.21059 -32.73090 -31.00450 -28.94409 -25.97168 -25.57756 -22.02272 -20.83711 -20.56728 -18.33383 -17.63436 -16.67945 -16.28135 -15.82943 -15.57172 -15.39151 -14.84079 -14.47732 -13.57712 -13.49260 -13.12799 -13.09612 -12.90161 -12.63976 -12.46983 -12.02419 -11.86806 -11.09831 -10.82125 -10.66147 -10.22675 -9.89347 -9.74186 -9.07350 -8.92746 -8.82949 -8.48008 -6.92287 -6.53203 -4.80482 1.34862 2.28966 2.67161 2.93905 2.96939 3.16809 3.31850 3.48695 3.69885 4.16762 4.34278 4.73658 4.75842 4.78031 4.84634 5.17955 5.25682 5.50086 5.52307 5.57738 5.66953 5.80040 6.10636 6.15703 6.19808 6.41792 6.85629 7.55076 7.72073 8.40916 8.41520 8.99900 10.56805 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.059282 B = 0.004061 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.201595 B = 6892.507701 C = 7099.557329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.134 3.866 3 Si 0.807 3.193 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.210 1.210 7 C -0.830 4.830 8 H 0.094 0.906 9 S 1.326 4.674 10 O -0.901 6.901 11 C -0.490 4.490 12 C 0.547 3.453 13 O -0.534 6.534 14 N -0.734 5.734 15 C 0.200 3.800 16 C -0.031 4.031 17 C -0.187 4.187 18 C -0.218 4.218 19 C -0.034 4.034 20 O -0.172 6.172 21 H 0.274 0.726 22 H 0.130 0.870 23 H 0.103 0.897 24 H 0.403 0.597 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.823 -14.245 -5.620 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.081 4.081 3 Si 0.628 3.372 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.132 1.132 7 C -0.971 4.971 8 H 0.112 0.888 9 S 1.524 4.476 10 O -0.895 6.895 11 C -0.622 4.622 12 C 0.335 3.665 13 O -0.410 6.410 14 N -0.390 5.390 15 C 0.076 3.924 16 C -0.082 4.082 17 C -0.208 4.208 18 C -0.237 4.237 19 C -0.102 4.102 20 O -0.067 6.067 21 H 0.084 0.916 22 H 0.148 0.852 23 H 0.121 0.879 24 H 0.237 0.763 25 H 0.119 0.881 26 H 0.102 0.898 27 H 0.170 0.830 28 H 0.167 0.833 29 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 15.834 -12.597 -5.270 20.909 hybrid contribution -1.326 -1.211 1.615 2.415 sum 14.508 -13.808 -3.656 20.360 Atomic orbital electron populations 1.70020 1.06820 1.28446 1.42821 1.24583 0.94428 0.99236 0.89815 0.87719 0.84754 0.83914 0.80794 1.17822 1.18835 1.13205 1.27571 1.09299 0.99368 1.60844 0.88809 1.69711 0.89001 0.80640 1.08289 1.92902 1.84005 1.66102 1.46517 1.28266 0.94979 1.31224 1.07763 1.20145 0.89963 0.82148 0.74248 1.90710 1.62884 1.38405 1.48984 1.46172 1.06202 1.09007 1.77569 1.19593 0.82516 0.85764 1.04507 1.22427 1.07082 0.94192 0.84466 1.21727 1.06052 0.93316 0.99656 1.21880 1.08197 0.98760 0.94860 1.24131 1.04470 0.85432 0.96189 1.84067 1.68125 1.19453 1.35094 0.91576 0.85212 0.87850 0.76276 0.88096 0.89835 0.83009 0.83255 0.77994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.02 13.96 55.43 0.77 -24.25 15 2 C 0.13 3.83 5.47 -17.82 -0.10 3.73 15 3 Si 0.81 19.98 27.29 -169.99 -4.64 15.34 15 4 H -0.25 -5.60 7.11 56.52 0.40 -5.20 15 5 H -0.26 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.21 -5.49 5.57 56.52 0.32 -5.18 15 7 C -0.83 -23.01 9.94 30.60 0.30 -22.71 15 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 15 9 S 1.33 31.40 10.89 -107.50 -1.17 30.23 15 10 O -0.90 -26.61 15.65 -35.23 -0.55 -27.16 15 11 C -0.49 -9.12 6.37 36.00 0.23 -8.89 15 12 C 0.55 9.71 7.85 -10.99 -0.09 9.62 15 13 O -0.53 -11.14 15.87 5.55 0.09 -11.05 15 14 N -0.73 -9.91 5.55 -61.47 -0.34 -10.25 15 15 C 0.20 2.37 6.20 -5.19 -0.03 2.33 15 16 C -0.03 -0.34 6.69 -35.62 -0.24 -0.58 15 17 C -0.19 -1.77 10.81 -39.71 -0.43 -2.20 15 18 C -0.22 -1.81 10.91 -39.70 -0.43 -2.24 15 19 C -0.03 -0.28 12.09 29.42 0.36 0.07 15 20 O -0.17 -1.93 10.65 5.70 0.06 -1.87 15 21 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 22 H 0.13 1.94 8.14 -51.92 -0.42 1.52 15 23 H 0.10 1.98 8.14 -51.93 -0.42 1.56 15 24 H 0.40 4.59 8.46 -40.82 -0.35 4.24 15 25 H 0.10 1.08 8.14 -51.92 -0.42 0.65 15 26 H 0.08 1.07 8.14 -51.93 -0.42 0.64 15 27 H 0.15 1.18 8.06 -52.48 -0.42 0.76 15 28 H 0.15 0.90 8.06 -52.49 -0.42 0.47 15 29 H 0.20 0.91 8.06 -52.49 -0.42 0.49 15 LS Contribution 277.54 15.07 4.18 4.18 Total: -1.00 -37.38 277.54 -4.97 -42.35 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -2.95 Total: 3.32 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -0.43 Total: -20.85 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.43 Total: -34.50 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.40 Total: -40.08 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.64 Total: 15.34 kcal Atomic # 16 Polarization: 31.40 SS G_CDS: -1.17 Total: 30.23 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -37.38 -4.97 -42.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868273.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.531 kcal (2) G-P(sol) polarization free energy of solvation -37.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds