Wall clock time and date at job start Mon Mar 30 2020 04:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99737 * 2 1 4 4 H 1.48495 * 109.47689 * 270.00329 * 3 2 1 5 5 H 1.48501 * 109.47328 * 30.00682 * 3 2 1 6 6 H 1.48510 * 109.47019 * 150.00055 * 3 2 1 7 7 C 1.37880 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99732 * 359.97438 * 7 2 1 9 9 S 1.76194 * 119.99851 * 180.02562 * 7 2 1 10 10 O 1.42095 * 103.00426 * 66.14212 * 9 7 2 11 11 C 1.81404 * 103.00094 * 179.97438 * 9 7 2 12 12 C 1.50698 * 109.47096 * 179.97438 * 11 9 7 13 13 O 1.21283 * 120.00472 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 11 16 16 C 1.50703 * 109.47138 * 180.28062 * 15 14 12 17 17 C 1.34513 * 125.79287 * 89.71498 * 16 15 14 18 18 C 1.41377 * 106.84247 * 179.89020 * 17 16 15 19 19 C 1.34516 * 106.84199 * 0.37090 * 18 17 16 20 20 O 1.34302 * 125.78624 * 270.02476 * 16 15 14 21 21 H 0.96998 * 120.00204 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46580 * 59.99963 * 11 9 7 23 23 H 1.08993 * 109.46791 * 300.00356 * 11 9 7 24 24 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 25 25 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 26 26 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 27 27 H 1.08004 * 126.57894 * 0.02936 * 17 16 15 28 28 H 1.08000 * 126.58321 * 180.16576 * 18 17 16 29 29 H 1.08000 * 125.79416 * 179.74462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7665 -1.1940 0.0001 10 8 4.0858 -0.6348 1.2669 11 6 4.1747 -2.9615 -0.0001 12 6 5.6721 -3.1312 -0.0002 13 8 6.3931 -2.1559 0.0004 14 7 6.2102 -4.3669 0.0002 15 6 7.6658 -4.5320 -0.0060 16 6 8.0049 -6.0003 -0.0112 17 6 8.1723 -6.7652 -1.1049 18 6 8.4797 -8.0682 -0.6505 19 6 8.4736 -8.0236 0.6939 20 8 8.1854 -6.7685 1.0755 21 1 -0.4850 0.8400 0.0004 22 1 3.7561 -3.4308 -0.8904 23 1 3.7554 -3.4312 0.8896 24 1 5.6336 -5.1470 0.0001 25 1 8.0813 -4.0600 -0.8965 26 1 8.0883 -4.0647 0.8835 27 1 8.0901 -6.4449 -2.1331 28 1 8.6778 -8.9341 -1.2648 29 1 8.6672 -8.8558 1.3544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526868273.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:37 Heat of formation + Delta-G solvation = -88.510940 kcal Electronic energy + Delta-G solvation = -16103.437530 eV Core-core repulsion = 13119.063977 eV Total energy + Delta-G solvation = -2984.373553 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.055 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.55252 -40.63903 -36.18641 -36.03480 -34.88945 -33.93764 -32.12956 -30.18378 -28.10344 -26.56721 -22.70687 -21.93250 -21.58926 -20.16820 -18.65985 -18.03236 -17.66768 -17.30968 -17.07639 -16.68277 -16.43613 -15.51350 -15.16901 -14.86353 -14.71067 -14.51187 -14.00967 -13.76501 -13.74546 -13.53791 -13.02664 -12.92285 -12.78149 -12.64301 -11.88563 -11.25469 -11.02098 -10.88255 -10.57178 -10.26801 -9.53873 -8.95287 -8.67552 -6.99617 0.59216 1.09323 1.24875 1.42567 1.51341 1.55827 1.66779 1.98202 2.16308 2.41605 2.73409 2.86979 3.60354 3.69365 3.90166 4.11725 4.12832 4.34852 4.43371 4.53210 4.67409 4.88505 5.01000 5.13169 5.24679 5.57665 5.58369 6.16212 6.16805 6.34962 6.84032 7.07901 8.45219 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.059282 B = 0.004061 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.201595 B = 6892.507701 C = 7099.557329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.082 3.918 3 Si 0.855 3.145 4 H -0.204 1.204 5 H -0.260 1.260 6 H -0.233 1.233 7 C -0.848 4.848 8 H 0.068 0.932 9 S 1.365 4.635 10 O -0.962 6.962 11 C -0.479 4.479 12 C 0.547 3.453 13 O -0.569 6.569 14 N -0.714 5.714 15 C 0.201 3.799 16 C -0.058 4.058 17 C -0.180 4.180 18 C -0.227 4.227 19 C -0.031 4.031 20 O -0.195 6.195 21 H 0.281 0.719 22 H 0.173 0.827 23 H 0.101 0.899 24 H 0.415 0.585 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.167 0.833 28 H 0.173 0.827 29 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.286 -15.733 -6.901 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.129 4.129 3 Si 0.672 3.328 4 H -0.125 1.125 5 H -0.184 1.184 6 H -0.156 1.156 7 C -0.988 4.988 8 H 0.086 0.914 9 S 1.565 4.435 10 O -0.957 6.957 11 C -0.616 4.616 12 C 0.334 3.666 13 O -0.449 6.449 14 N -0.368 5.368 15 C 0.078 3.922 16 C -0.107 4.107 17 C -0.200 4.200 18 C -0.246 4.246 19 C -0.099 4.099 20 O -0.092 6.092 21 H 0.091 0.909 22 H 0.190 0.810 23 H 0.120 0.880 24 H 0.252 0.748 25 H 0.132 0.868 26 H 0.089 0.911 27 H 0.185 0.815 28 H 0.191 0.809 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 17.263 -14.088 -6.576 23.232 hybrid contribution -1.691 -1.071 2.017 2.842 sum 15.571 -15.159 -4.558 22.205 Atomic orbital electron populations 1.70091 1.08198 1.29754 1.44272 1.25476 0.95265 1.02703 0.89430 0.86998 0.82190 0.80145 0.83465 1.12542 1.18412 1.15611 1.28038 1.11651 0.98446 1.60639 0.91388 1.68633 0.85388 0.83008 1.06423 1.92820 1.83949 1.69988 1.48943 1.27941 0.96688 1.26942 1.09995 1.19866 0.89146 0.83055 0.74494 1.90711 1.63305 1.39778 1.51108 1.45969 1.07491 1.07933 1.75394 1.19627 0.80896 0.87105 1.04574 1.22212 1.09674 0.93790 0.85030 1.22038 1.04331 0.93655 0.99983 1.22239 1.08077 0.99078 0.95206 1.24921 1.02780 0.85034 0.97157 1.84048 1.68780 1.20675 1.35706 0.90918 0.80951 0.88014 0.74809 0.86758 0.91125 0.81528 0.80903 0.74700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.17 13.96 21.45 0.30 -52.87 15 2 C 0.08 4.72 5.47 84.66 0.46 5.19 15 3 Si 0.85 40.96 27.29 68.60 1.87 42.83 15 4 H -0.20 -8.10 7.11 99.48 0.71 -7.40 15 5 H -0.26 -12.15 7.11 99.48 0.71 -11.44 15 6 H -0.23 -12.10 5.57 99.48 0.55 -11.55 15 7 C -0.85 -47.61 9.94 67.73 0.67 -46.94 15 8 H 0.07 4.02 8.06 -2.91 -0.02 4.00 15 9 S 1.36 64.26 10.89 -56.49 -0.62 63.64 15 10 O -0.96 -57.47 15.65 -148.98 -2.33 -59.81 15 11 C -0.48 -17.06 6.37 71.24 0.45 -16.61 15 12 C 0.55 18.61 7.85 87.66 0.69 19.29 15 13 O -0.57 -23.37 15.87 -3.04 -0.05 -23.42 15 14 N -0.71 -17.90 5.55 -466.78 -2.59 -20.49 15 15 C 0.20 4.48 6.20 85.63 0.53 5.01 15 16 C -0.06 -1.14 6.69 24.83 0.17 -0.98 15 17 C -0.18 -2.92 10.81 22.19 0.24 -2.68 15 18 C -0.23 -3.07 10.91 22.19 0.24 -2.82 15 19 C -0.03 -0.44 12.09 66.97 0.81 0.37 15 20 O -0.20 -4.05 10.65 -2.52 -0.03 -4.08 15 21 H 0.28 15.38 8.31 -92.71 -0.77 14.61 15 22 H 0.17 4.64 8.14 -2.39 -0.02 4.62 15 23 H 0.10 3.77 8.14 -2.39 -0.02 3.75 15 24 H 0.42 8.43 8.46 -92.71 -0.78 7.65 15 25 H 0.11 2.25 8.14 -2.38 -0.02 2.23 15 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 27 H 0.17 2.09 8.06 -2.91 -0.02 2.07 15 28 H 0.17 1.42 8.06 -2.91 -0.02 1.40 15 29 H 0.24 1.29 8.06 -2.91 -0.02 1.27 15 Total: -1.00 -82.46 277.54 1.07 -81.39 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.24 Total: 12.96 kcal Atomic # 6 Polarization: -44.42 SS G_CDS: 4.27 Total: -40.15 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -2.29 Total: -73.37 kcal Atomic # 8 Polarization: -84.90 SS G_CDS: -2.41 Total: -87.31 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.87 Total: 42.83 kcal Atomic # 16 Polarization: 64.26 SS G_CDS: -0.62 Total: 63.64 kcal Total: -82.46 1.07 -81.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868273.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.123 kcal (2) G-P(sol) polarization free energy of solvation -82.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds