Wall clock time and date at job start Mon Mar 30 2020 04:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48502 * 109.47061 * 269.99507 * 3 2 1 5 5 H 1.48498 * 109.47233 * 29.99931 * 3 2 1 6 6 H 1.48505 * 109.46862 * 149.99953 * 3 2 1 7 7 C 1.39857 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99706 * 197.96478 * 7 2 1 9 9 C 1.41197 * 120.00254 * 17.95969 * 7 2 1 10 10 C 1.40787 * 120.14348 * 24.60312 * 9 7 2 11 11 C 1.37922 * 119.76427 * 179.97438 * 10 9 7 12 12 N 1.39867 * 119.96718 * 180.02562 * 11 10 9 13 13 C 1.39982 * 120.06100 * 359.97438 * 11 10 9 14 14 O 1.35765 * 119.85354 * 180.02562 * 13 11 10 15 15 C 1.39171 * 120.29642 * 0.27907 * 13 11 10 16 16 Br 1.89103 * 119.88310 * 179.74421 * 15 13 11 17 17 C 1.37579 * 120.23331 * 359.48479 * 15 13 11 18 18 H 0.97006 * 119.99699 * 0.02562 * 1 2 3 19 19 H 1.07997 * 120.11460 * 0.02562 * 10 9 7 20 20 H 0.97005 * 120.00024 * 179.97438 * 12 11 10 21 21 H 0.97001 * 120.00007 * 359.97438 * 12 11 10 22 22 H 0.96696 * 113.99746 * 90.00194 * 14 13 11 23 23 H 1.07995 * 120.03223 * 180.27729 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4404 2.6527 0.7000 6 1 3.5405 1.4402 0.7001 7 6 2.0083 -1.2112 0.0005 8 1 3.0487 -1.2338 0.2890 9 6 1.3539 -2.4044 -0.3760 10 6 0.2263 -2.3571 -1.2176 11 6 -0.4065 -3.5274 -1.5809 12 7 -1.5268 -3.4854 -2.4173 13 6 0.0719 -4.7574 -1.1142 14 8 -0.5539 -5.9069 -1.4749 15 6 1.1832 -4.8067 -0.2778 16 35 1.8153 -6.4741 0.3517 17 6 1.8267 -3.6471 0.0883 18 1 -0.4850 0.8401 -0.0004 19 1 -0.1413 -1.4077 -1.5781 20 1 -1.9720 -4.3083 -2.6734 21 1 -1.8585 -2.6333 -2.7413 22 1 -0.2099 -6.3039 -2.2867 23 1 2.6915 -3.6896 0.7338 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575714105.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:56 Heat of formation + Delta-G solvation = -49.819267 kcal Electronic energy + Delta-G solvation = -11737.548866 eV Core-core repulsion = 9402.548623 eV Total energy + Delta-G solvation = -2335.000243 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.18692 -37.46903 -35.53695 -34.88457 -32.16951 -30.04212 -28.89563 -26.75694 -22.86545 -22.37660 -19.28161 -18.94547 -17.66100 -17.02052 -16.36670 -16.07399 -15.21200 -14.80999 -14.27779 -13.64173 -13.56494 -13.06693 -12.75750 -12.49319 -12.17879 -12.10468 -11.74335 -11.26217 -11.09144 -10.96270 -10.51524 -9.17344 -8.71246 -8.11735 -6.38329 0.72898 0.94499 1.04012 1.42002 1.52322 1.54797 2.21986 2.63314 3.31464 3.56565 3.78143 4.76344 4.88882 5.04947 5.21586 5.33865 5.55458 5.73619 5.89054 6.08984 6.46467 6.76866 6.82181 6.90166 7.25030 7.26933 8.29586 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.032288 B = 0.007900 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.983719 B = 3543.279824 C = 4326.894817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.039 3.961 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.486 4.486 8 H 0.081 0.919 9 C 0.115 3.885 10 C -0.244 4.244 11 C 0.214 3.786 12 N -0.868 5.868 13 C -0.080 4.080 14 O -0.484 6.484 15 C -0.041 4.041 16 Br -0.065 7.065 17 C -0.242 4.242 18 H 0.290 0.710 19 H 0.115 0.885 20 H 0.401 0.599 21 H 0.399 0.601 22 H 0.370 0.630 23 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.729 -5.408 -3.219 6.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.515 4.515 8 H 0.099 0.901 9 C 0.110 3.890 10 C -0.269 4.269 11 C 0.108 3.892 12 N -0.410 5.410 13 C -0.131 4.131 14 O -0.291 6.291 15 C -0.121 4.121 16 Br 0.020 6.980 17 C -0.264 4.264 18 H 0.101 0.899 19 H 0.132 0.868 20 H 0.230 0.770 21 H 0.227 0.773 22 H 0.223 0.777 23 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.453 -5.812 -2.410 6.308 hybrid contribution 0.100 0.956 -0.619 1.143 sum 0.553 -4.856 -3.029 5.750 Atomic orbital electron populations 1.69916 1.08947 1.30741 1.34173 1.26755 0.95492 1.04453 0.91051 0.85179 0.79080 0.75761 0.79584 1.18546 1.19321 1.18254 1.19798 0.98618 0.92143 1.40955 0.90133 1.17632 0.90984 0.92210 0.88132 1.20698 1.03114 0.95588 1.07510 1.17850 0.88435 0.92484 0.90395 1.42096 1.31746 1.11096 1.56037 1.17154 1.00379 0.84603 1.10944 1.84844 1.60451 1.36969 1.46843 1.21746 0.97594 0.90653 1.02094 1.96404 1.87714 1.26021 1.87889 1.20812 1.05026 0.91336 1.09272 0.89925 0.86750 0.77016 0.77286 0.77651 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.55 10.96 21.81 0.24 -40.31 14 2 C 0.04 1.88 5.13 85.22 0.44 2.32 14 3 Si 0.98 36.49 29.60 68.60 2.03 38.52 14 4 H -0.26 -9.36 7.11 99.48 0.71 -8.65 14 5 H -0.27 -9.50 7.11 99.48 0.71 -8.79 14 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 14 7 C -0.49 -25.31 9.03 23.39 0.21 -25.09 14 8 H 0.08 4.05 7.91 -2.91 -0.02 4.02 14 9 C 0.11 6.06 5.57 -21.29 -0.12 5.94 14 10 C -0.24 -12.30 8.51 22.82 0.19 -12.11 14 11 C 0.21 9.54 6.76 38.21 0.26 9.80 14 12 N -0.87 -30.30 9.08 -51.19 -0.46 -30.77 14 13 C -0.08 -3.50 6.74 22.92 0.15 -3.34 14 14 O -0.48 -17.88 12.04 -90.92 -1.09 -18.97 14 15 C -0.04 -1.85 6.22 22.34 0.14 -1.71 14 16 Br -0.07 -2.42 33.13 -20.37 -0.67 -3.09 14 17 C -0.24 -11.95 9.51 22.75 0.22 -11.74 14 18 H 0.29 13.01 8.30 -92.70 -0.77 12.24 14 19 H 0.11 5.92 6.16 -2.91 -0.02 5.90 14 20 H 0.40 12.01 8.18 -92.70 -0.76 11.25 14 21 H 0.40 12.69 8.84 -92.71 -0.82 11.87 14 22 H 0.37 10.60 9.06 -74.06 -0.67 9.93 14 23 H 0.10 5.00 8.06 -2.91 -0.02 4.98 14 Total: -1.00 -57.11 230.11 0.57 -56.54 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.96 Total: 34.02 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 1.49 Total: -35.93 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -0.23 Total: -71.08 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -1.09 Total: -18.97 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.52 kcal Atomic # 35 Polarization: -2.42 SS G_CDS: -0.67 Total: -3.09 kcal Total: -57.11 0.57 -56.54 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575714105.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.726 kcal (2) G-P(sol) polarization free energy of solvation -57.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds