Wall clock time and date at job start Mon Mar 30 2020 04:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 110.99875 * 2 1 4 4 C 1.46896 * 111.00039 * 123.95444 * 2 1 3 5 5 C 1.53003 * 109.47410 * 169.99981 * 4 2 1 6 6 C 1.52998 * 109.47000 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46650 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.51036 * 304.91092 * 7 6 5 9 9 C 1.53103 * 109.50786 * 184.78415 * 7 6 5 10 10 N 1.47010 * 109.26073 * 183.21906 * 9 7 6 11 11 C 1.46894 * 111.00052 * 182.38957 * 10 9 7 12 12 C 1.50695 * 109.47240 * 302.40770 * 11 10 9 13 13 H 1.08004 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00190 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99949 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00233 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46837 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47571 * 119.99708 * 16 14 12 19 19 H 1.48501 * 109.47162 * 239.99940 * 16 14 12 20 20 C 1.47016 * 110.75668 * 58.60657 * 10 9 7 21 21 C 1.53096 * 109.25942 * 301.38999 * 20 10 9 22 22 O 1.43012 * 109.51188 * 64.99900 * 7 6 5 23 23 H 1.09003 * 109.46836 * 296.04690 * 1 2 3 24 24 H 1.09002 * 109.47451 * 56.04496 * 1 2 3 25 25 H 1.08997 * 109.47410 * 176.04735 * 1 2 3 26 26 H 1.09005 * 109.46849 * 183.95267 * 3 2 1 27 27 H 1.08995 * 109.47142 * 303.95223 * 3 2 1 28 28 H 1.09002 * 109.47322 * 63.95814 * 3 2 1 29 29 H 1.09001 * 109.47518 * 49.99623 * 4 2 1 30 30 H 1.09001 * 109.47240 * 290.00124 * 4 2 1 31 31 H 1.09000 * 109.46627 * 59.99664 * 5 4 2 32 32 H 1.08998 * 109.46377 * 299.99941 * 5 4 2 33 33 H 1.08996 * 109.47311 * 60.00240 * 6 5 4 34 34 H 1.08998 * 109.47420 * 299.99195 * 6 5 4 35 35 H 1.09008 * 109.50058 * 303.15002 * 9 7 6 36 36 H 1.08992 * 109.50666 * 63.23302 * 9 7 6 37 37 H 1.09003 * 109.47249 * 62.41239 * 11 10 9 38 38 H 1.09009 * 109.47126 * 182.40532 * 11 10 9 39 39 H 0.96994 * 119.99862 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.50851 * 181.44676 * 20 10 9 41 41 H 1.09004 * 109.50278 * 61.32439 * 20 10 9 42 42 H 1.09001 * 109.50487 * 176.77808 * 21 20 10 43 43 H 1.08997 * 109.50276 * 296.91013 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9703 6 6 4.0526 -1.7537 2.1549 7 6 5.5617 -1.9425 1.9879 8 1 5.7661 -2.4050 1.0222 9 6 6.0915 -2.8413 3.1084 10 7 7.5522 -2.9564 2.9880 11 6 8.0954 -3.8579 4.0127 12 6 7.7137 -3.3523 5.3800 13 1 7.1266 -2.4511 5.4781 14 6 8.1149 -4.0396 6.5060 15 7 8.8303 -5.1367 6.3866 16 14 7.6412 -3.4133 8.2009 17 1 6.8407 -2.1700 8.0632 18 1 6.8367 -4.4453 8.9030 19 1 8.8699 -3.1262 8.9838 20 6 8.1869 -1.6323 3.0610 21 6 7.6361 -0.7458 1.9409 22 8 6.2125 -0.6709 2.0556 23 1 -0.3633 0.4513 0.9233 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 3.0828 1.3432 -0.0708 27 1 1.5898 1.9163 -0.8524 28 1 1.7044 1.8723 0.9233 29 1 1.5089 -1.7406 1.1757 30 1 1.7975 -0.2248 2.0628 31 1 3.9909 0.0193 0.9323 32 1 3.7023 -1.4966 0.0451 33 1 3.5661 -2.7284 2.1924 34 1 3.8547 -1.2129 3.0803 35 1 5.8393 -2.4048 4.0750 36 1 5.6398 -3.8298 3.0264 37 1 7.6886 -4.8588 3.8687 38 1 9.1817 -3.8916 3.9279 39 1 9.1128 -5.6200 7.1787 40 1 9.2654 -1.7387 2.9440 41 1 7.9682 -1.1766 4.0267 42 1 8.0612 0.2543 2.0259 43 1 7.9013 -1.1739 0.9743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595904759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:44 Heat of formation + Delta-G solvation = -48.940179 kcal Electronic energy + Delta-G solvation = -19721.793279 eV Core-core repulsion = 16801.600718 eV Total energy + Delta-G solvation = -2920.192561 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.13153 -37.78129 -35.28594 -33.86290 -32.38044 -30.33047 -28.26752 -27.75573 -26.52710 -24.93459 -23.23690 -22.43838 -21.04126 -20.64675 -19.49153 -16.48838 -16.22982 -15.79226 -15.54250 -15.33003 -14.85011 -14.52331 -14.30209 -14.13700 -13.86390 -13.50551 -12.86492 -12.59740 -12.36662 -12.19802 -11.90011 -11.84894 -11.72455 -11.40455 -11.28261 -11.08651 -10.93242 -10.80559 -10.58004 -10.45737 -10.29057 -10.11760 -9.76578 -9.63473 -8.93756 -8.52937 -8.46638 -7.24318 -6.06180 -4.15283 3.24141 3.32403 3.36391 3.79329 4.19226 4.38051 4.75824 4.95912 4.97831 5.10244 5.19618 5.23663 5.31247 5.33992 5.41173 5.54847 5.61126 5.63454 5.64479 5.69460 5.77418 5.81694 5.85009 5.96704 5.99001 6.17751 6.19755 6.32801 6.44999 6.56850 6.69196 6.80934 6.86304 6.88996 7.19990 7.48327 7.66026 7.85909 7.97657 8.20117 8.25351 8.94835 9.51763 10.99150 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.027045 B = 0.004163 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.081703 B = 6724.635420 C = 7223.494025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.021 3.979 4 C 0.053 3.947 5 C -0.111 4.111 6 C -0.109 4.109 7 C 0.094 3.906 8 H 0.058 0.942 9 C 0.033 3.967 10 N -0.541 5.541 11 C 0.187 3.813 12 C -0.550 4.550 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.024 3.976 21 C 0.066 3.934 22 O -0.387 6.387 23 H 0.023 0.977 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.024 0.976 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.031 0.969 39 H 0.262 0.738 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.808 9.680 -11.250 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.273 5.273 3 C -0.127 4.127 4 C -0.075 4.075 5 C -0.148 4.148 6 C -0.148 4.148 7 C 0.036 3.964 8 H 0.076 0.924 9 C -0.096 4.096 10 N -0.265 5.265 11 C 0.061 3.939 12 C -0.589 4.589 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.104 4.104 21 C -0.011 4.011 22 O -0.307 6.307 23 H 0.042 0.958 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.554 9.269 -12.020 19.076 hybrid contribution -0.431 0.700 2.705 2.827 sum -11.985 9.970 -9.315 18.161 Atomic orbital electron populations 1.22377 0.87643 1.02162 1.00262 1.61997 1.07559 1.14082 1.43682 1.22443 1.01535 0.88647 1.00115 1.22219 0.96428 0.97930 0.90886 1.21529 0.93394 1.01369 0.98554 1.21535 0.93527 1.00783 0.98909 1.22196 0.91565 0.84273 0.98338 0.92394 1.22549 0.90404 0.99262 0.97348 1.62748 1.03278 1.09914 1.50593 1.19763 0.95601 0.91677 0.86853 1.21786 1.34390 1.10472 0.92254 0.92376 1.24967 0.94829 0.94788 0.99211 1.69954 1.36713 1.16733 1.29521 0.86586 0.78362 0.78920 0.84461 1.19830 1.20876 1.20898 1.22557 0.99139 0.90996 0.97752 1.22648 0.80925 0.99507 0.98041 1.87867 1.19099 1.29215 1.94489 0.95830 0.91558 0.91395 0.90685 0.91725 0.95749 0.90860 0.94851 0.91189 0.91376 0.90570 0.91373 0.93233 0.90941 0.94968 0.95081 0.92826 0.90904 0.93512 0.89600 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.57 60.06 0.57 0.78 16 2 N -0.55 -5.82 5.02 -251.26 -1.26 -7.09 16 3 C 0.02 0.20 9.32 60.06 0.56 0.76 16 4 C 0.05 0.58 4.96 -3.82 -0.02 0.56 16 5 C -0.11 -1.34 5.04 -26.73 -0.13 -1.47 16 6 C -0.11 -1.48 4.93 -26.73 -0.13 -1.61 16 7 C 0.09 1.55 2.81 -26.68 -0.07 1.48 16 8 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 9 C 0.03 0.66 4.56 -3.71 -0.02 0.65 16 10 N -0.54 -11.84 4.94 -235.75 -1.16 -13.01 16 11 C 0.19 4.85 5.15 -4.98 -0.03 4.82 16 12 C -0.55 -15.22 7.66 -34.44 -0.26 -15.48 16 13 H 0.06 1.62 5.79 -52.48 -0.30 1.31 16 14 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 15 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.02 0.49 5.38 -3.71 -0.02 0.47 16 21 C 0.07 1.08 7.01 37.21 0.26 1.34 16 22 O -0.39 -6.73 10.01 -35.23 -0.35 -7.08 16 23 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 25 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 26 H 0.07 0.75 6.47 -51.93 -0.34 0.42 16 27 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 30 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 31 H 0.07 0.91 6.24 -51.93 -0.32 0.59 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 1.10 6.42 -51.92 -0.33 0.76 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.86 8.11 -51.92 -0.42 0.44 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.07 1.40 8.12 -51.93 -0.42 0.98 16 41 H 0.05 1.03 6.93 -51.93 -0.36 0.67 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -29.80 334.30 -9.38 -39.18 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.97 Total: -2.06 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 0.61 Total: -5.99 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: -1.69 Total: -45.58 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.35 Total: -7.08 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.80 -9.38 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595904759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.756 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds