Wall clock time and date at job start Mon Mar 30 2020 04:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 110.99875 * 2 1 4 4 C 1.46896 * 111.00039 * 123.95444 * 2 1 3 5 5 C 1.53003 * 109.47410 * 169.99981 * 4 2 1 6 6 C 1.52998 * 109.47000 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46650 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.51036 * 304.91092 * 7 6 5 9 9 C 1.53103 * 109.50786 * 184.78415 * 7 6 5 10 10 N 1.47010 * 109.26073 * 183.21906 * 9 7 6 11 11 C 1.46894 * 111.00052 * 182.38957 * 10 9 7 12 12 C 1.50695 * 109.47240 * 302.40770 * 11 10 9 13 13 H 1.08004 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00190 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99949 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00233 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46837 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47571 * 119.99708 * 16 14 12 19 19 H 1.48501 * 109.47162 * 239.99940 * 16 14 12 20 20 C 1.47016 * 110.75668 * 58.60657 * 10 9 7 21 21 C 1.53096 * 109.25942 * 301.38999 * 20 10 9 22 22 O 1.43012 * 109.51188 * 64.99900 * 7 6 5 23 23 H 1.09003 * 109.46836 * 296.04690 * 1 2 3 24 24 H 1.09002 * 109.47451 * 56.04496 * 1 2 3 25 25 H 1.08997 * 109.47410 * 176.04735 * 1 2 3 26 26 H 1.09005 * 109.46849 * 183.95267 * 3 2 1 27 27 H 1.08995 * 109.47142 * 303.95223 * 3 2 1 28 28 H 1.09002 * 109.47322 * 63.95814 * 3 2 1 29 29 H 1.09001 * 109.47518 * 49.99623 * 4 2 1 30 30 H 1.09001 * 109.47240 * 290.00124 * 4 2 1 31 31 H 1.09000 * 109.46627 * 59.99664 * 5 4 2 32 32 H 1.08998 * 109.46377 * 299.99941 * 5 4 2 33 33 H 1.08996 * 109.47311 * 60.00240 * 6 5 4 34 34 H 1.08998 * 109.47420 * 299.99195 * 6 5 4 35 35 H 1.09008 * 109.50058 * 303.15002 * 9 7 6 36 36 H 1.08992 * 109.50666 * 63.23302 * 9 7 6 37 37 H 1.09003 * 109.47249 * 62.41239 * 11 10 9 38 38 H 1.09009 * 109.47126 * 182.40532 * 11 10 9 39 39 H 0.96994 * 119.99862 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.50851 * 181.44676 * 20 10 9 41 41 H 1.09004 * 109.50278 * 61.32439 * 20 10 9 42 42 H 1.09001 * 109.50487 * 176.77808 * 21 20 10 43 43 H 1.08997 * 109.50276 * 296.91013 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9703 6 6 4.0526 -1.7537 2.1549 7 6 5.5617 -1.9425 1.9879 8 1 5.7661 -2.4050 1.0222 9 6 6.0915 -2.8413 3.1084 10 7 7.5522 -2.9564 2.9880 11 6 8.0954 -3.8579 4.0127 12 6 7.7137 -3.3523 5.3800 13 1 7.1266 -2.4511 5.4781 14 6 8.1149 -4.0396 6.5060 15 7 8.8303 -5.1367 6.3866 16 14 7.6412 -3.4133 8.2009 17 1 6.8407 -2.1700 8.0632 18 1 6.8367 -4.4453 8.9030 19 1 8.8699 -3.1262 8.9838 20 6 8.1869 -1.6323 3.0610 21 6 7.6361 -0.7458 1.9409 22 8 6.2125 -0.6709 2.0556 23 1 -0.3633 0.4513 0.9233 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 3.0828 1.3432 -0.0708 27 1 1.5898 1.9163 -0.8524 28 1 1.7044 1.8723 0.9233 29 1 1.5089 -1.7406 1.1757 30 1 1.7975 -0.2248 2.0628 31 1 3.9909 0.0193 0.9323 32 1 3.7023 -1.4966 0.0451 33 1 3.5661 -2.7284 2.1924 34 1 3.8547 -1.2129 3.0803 35 1 5.8393 -2.4048 4.0750 36 1 5.6398 -3.8298 3.0264 37 1 7.6886 -4.8588 3.8687 38 1 9.1817 -3.8916 3.9279 39 1 9.1128 -5.6200 7.1787 40 1 9.2654 -1.7387 2.9440 41 1 7.9682 -1.1766 4.0267 42 1 8.0612 0.2543 2.0259 43 1 7.9013 -1.1739 0.9743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595904759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:44 Heat of formation + Delta-G solvation = -70.110181 kcal Electronic energy + Delta-G solvation = -19722.711279 eV Core-core repulsion = 16801.600718 eV Total energy + Delta-G solvation = -2921.110561 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60314 -38.63265 -36.98931 -35.00123 -34.47445 -31.57716 -30.03571 -28.46518 -27.92330 -26.61165 -24.48224 -24.07362 -22.28153 -21.68540 -21.09772 -18.59952 -17.48521 -17.22927 -16.55796 -16.46459 -16.26948 -15.99750 -15.57475 -15.43218 -15.27247 -14.83500 -14.67473 -13.76856 -13.65728 -13.31165 -13.23402 -12.99565 -12.95524 -12.76101 -12.61428 -12.58553 -12.39966 -12.34411 -12.20752 -11.92936 -11.81186 -11.73243 -11.39252 -11.15668 -10.65625 -10.43478 -9.30120 -9.13096 -8.21080 -6.40573 1.32640 1.34061 1.45916 2.33388 2.87012 2.99237 3.04322 3.27571 3.87639 4.00920 4.11707 4.23696 4.28335 4.30606 4.37507 4.38255 4.50827 4.56015 4.60296 4.67233 4.72881 4.76095 4.79665 4.85146 4.92518 5.01675 5.02248 5.06031 5.12017 5.16230 5.18013 5.26868 5.35415 5.45932 5.68707 5.96122 6.09134 6.13671 6.15471 6.28257 6.40886 6.78865 7.31002 8.82269 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.027045 B = 0.004163 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.081703 B = 6724.635420 C = 7223.494025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.563 5.563 3 C 0.021 3.979 4 C 0.057 3.943 5 C -0.099 4.099 6 C -0.103 4.103 7 C 0.102 3.898 8 H 0.067 0.933 9 C 0.035 3.965 10 N -0.542 5.542 11 C 0.200 3.800 12 C -0.559 4.559 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.924 5.924 16 Si 0.958 3.042 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.276 1.276 20 C 0.023 3.977 21 C 0.073 3.927 22 O -0.393 6.393 23 H 0.025 0.975 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.023 0.977 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.266 0.734 40 H 0.075 0.925 41 H 0.021 0.979 42 H 0.116 0.884 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.065 10.934 -11.767 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.287 5.287 3 C -0.127 4.127 4 C -0.071 4.071 5 C -0.137 4.137 6 C -0.141 4.141 7 C 0.044 3.956 8 H 0.085 0.915 9 C -0.094 4.094 10 N -0.265 5.265 11 C 0.073 3.927 12 C -0.598 4.598 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.783 3.217 17 H -0.195 1.195 18 H -0.200 1.200 19 H -0.201 1.201 20 C -0.105 4.105 21 C -0.004 4.004 22 O -0.312 6.312 23 H 0.043 0.957 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.088 0.912 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.039 0.961 42 H 0.134 0.866 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.822 10.538 -12.553 20.809 hybrid contribution -0.019 0.297 2.820 2.836 sum -12.841 10.835 -9.733 19.417 Atomic orbital electron populations 1.22431 0.86406 1.02805 1.00844 1.62006 1.08800 1.14509 1.43368 1.22457 1.01181 0.88423 1.00672 1.22143 0.95539 0.98451 0.90999 1.21387 0.94205 1.00481 0.97619 1.21510 0.91530 1.01793 0.99310 1.22204 0.93075 0.83347 0.96934 0.91496 1.22607 0.89115 0.99939 0.97705 1.62686 1.04577 1.10675 1.48606 1.19426 0.94053 0.91533 0.87691 1.21964 1.34261 1.10282 0.93248 0.92900 1.25812 0.94685 0.94917 1.03254 1.70064 1.37628 1.17853 1.30857 0.85508 0.78256 0.78441 0.79497 1.19485 1.20029 1.20121 1.22652 0.99511 0.90201 0.98167 1.22723 0.80415 1.00343 0.96935 1.87880 1.19556 1.29449 1.94363 0.95687 0.90433 0.90863 0.91366 0.90405 0.95843 0.90124 0.95243 0.92032 0.91298 0.89217 0.92168 0.95829 0.91159 0.97460 0.97455 0.92454 0.90691 0.96081 0.86610 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.57 127.69 1.22 1.57 16 2 N -0.56 -10.81 5.02 -948.86 -4.76 -15.57 16 3 C 0.02 0.36 9.32 127.69 1.19 1.55 16 4 C 0.06 1.13 4.96 86.30 0.43 1.56 16 5 C -0.10 -2.22 5.04 30.59 0.15 -2.06 16 6 C -0.10 -2.65 4.93 30.59 0.15 -2.50 16 7 C 0.10 3.25 2.81 30.63 0.09 3.33 16 8 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 9 C 0.04 1.41 4.56 86.32 0.39 1.80 16 10 N -0.54 -24.04 4.94 -899.78 -4.44 -28.48 16 11 C 0.20 10.73 5.15 85.56 0.44 11.18 16 12 C -0.56 -31.60 7.66 25.60 0.20 -31.41 16 13 H 0.05 3.00 5.79 -2.91 -0.02 2.99 16 14 C 0.01 0.74 5.46 84.65 0.46 1.20 16 15 N -0.92 -55.28 13.29 21.45 0.28 -55.00 16 16 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 C 0.02 0.93 5.38 86.31 0.46 1.39 16 21 C 0.07 2.23 7.01 72.01 0.50 2.74 16 22 O -0.39 -12.98 10.01 -148.98 -1.49 -14.47 16 23 H 0.02 0.36 8.14 -2.39 -0.02 0.35 16 24 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 25 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 26 H 0.07 1.27 6.47 -2.38 -0.02 1.25 16 27 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 28 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.08 1.48 8.06 -2.39 -0.02 1.46 16 30 H 0.03 0.61 8.12 -2.39 -0.02 0.59 16 31 H 0.06 1.50 6.24 -2.39 -0.01 1.48 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.02 1.06 6.42 -2.38 -0.02 1.05 16 36 H 0.07 2.79 8.14 -2.39 -0.02 2.78 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.01 0.42 8.11 -2.38 -0.02 0.40 16 39 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.07 2.88 8.12 -2.39 -0.02 2.86 16 41 H 0.02 0.93 6.93 -2.38 -0.02 0.92 16 42 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -63.90 334.30 -1.75 -65.65 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.94 Total: 11.14 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 5.69 Total: -9.65 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -8.92 Total: -99.05 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -1.49 Total: -14.47 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -63.90 -1.75 -65.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595904759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.458 kcal (2) G-P(sol) polarization free energy of solvation -63.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds