Wall clock time and date at job start Mon Mar 30 2020 04:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99860 * 2 1 4 4 C 1.46904 * 110.99346 * 123.94894 * 2 1 3 5 5 C 1.53005 * 109.46461 * 170.00359 * 4 2 1 6 6 C 1.53003 * 109.46847 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.46982 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.50668 * 55.08480 * 7 6 5 9 9 C 1.53098 * 109.50512 * 175.21219 * 7 6 5 10 10 N 1.47013 * 109.25801 * 176.78307 * 9 7 6 11 11 C 1.46906 * 111.00056 * 177.60812 * 10 9 7 12 12 C 1.50703 * 109.47109 * 189.68132 * 11 10 9 13 13 H 1.08005 * 119.99876 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99989 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48498 * 109.46997 * 329.99580 * 16 14 12 20 20 C 1.47013 * 110.75363 * 301.38693 * 10 9 7 21 21 C 1.53094 * 109.25905 * 58.61635 * 20 10 9 22 22 O 1.43015 * 109.25875 * 303.14993 * 21 20 10 23 23 H 1.09001 * 109.47571 * 296.05359 * 1 2 3 24 24 H 1.09004 * 109.46751 * 56.05215 * 1 2 3 25 25 H 1.09004 * 109.47065 * 176.04636 * 1 2 3 26 26 H 1.09006 * 109.46965 * 183.95113 * 3 2 1 27 27 H 1.09001 * 109.47414 * 303.94741 * 3 2 1 28 28 H 1.09004 * 109.47717 * 63.94932 * 3 2 1 29 29 H 1.09002 * 109.46959 * 50.00566 * 4 2 1 30 30 H 1.08995 * 109.47541 * 289.99812 * 4 2 1 31 31 H 1.08989 * 109.47495 * 60.00198 * 5 4 2 32 32 H 1.09004 * 109.46935 * 299.99726 * 5 4 2 33 33 H 1.09000 * 109.47639 * 59.99368 * 6 5 4 34 34 H 1.09004 * 109.46802 * 299.99406 * 6 5 4 35 35 H 1.09004 * 109.50555 * 56.85331 * 9 7 6 36 36 H 1.08994 * 109.51209 * 296.72010 * 9 7 6 37 37 H 1.08992 * 109.47459 * 309.68051 * 11 10 9 38 38 H 1.09004 * 109.47040 * 69.68202 * 11 10 9 39 39 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.50993 * 178.55051 * 20 10 9 41 41 H 1.09004 * 109.50304 * 298.67760 * 20 10 9 42 42 H 1.08994 * 109.51023 * 63.08718 * 21 20 10 43 43 H 1.09000 * 109.50626 * 183.17846 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 3.5044 -0.9552 0.9705 6 6 4.0525 -1.7535 2.1551 7 6 5.5614 -1.9434 1.9877 8 1 6.0388 -0.9715 1.8622 9 6 6.1301 -2.6370 3.2284 10 7 7.5653 -2.8861 3.0295 11 6 8.1632 -3.5008 4.2223 12 6 9.6631 -3.5233 4.0776 13 1 10.1259 -3.1208 3.1886 14 6 10.4444 -4.0577 5.0801 15 7 9.8808 -4.5473 6.1628 16 14 12.3036 -4.0849 4.9010 17 1 12.8735 -2.8344 5.4637 18 1 12.8544 -5.2534 5.6335 19 1 12.6609 -4.1886 3.4634 20 6 7.7894 -3.7191 1.8390 21 6 7.2040 -3.0147 0.6123 22 8 5.8160 -2.7527 0.8363 23 1 -0.3634 0.4514 0.9232 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0828 1.3432 -0.0708 27 1 1.5899 1.9163 -0.8525 28 1 1.7043 1.8724 0.9233 29 1 1.5088 -1.7406 1.1757 30 1 1.7974 -0.2247 2.0629 31 1 3.9908 0.0193 0.9325 32 1 3.7023 -1.4966 0.0453 33 1 3.5660 -2.7282 2.1929 34 1 3.8545 -1.2125 3.0805 35 1 5.6144 -3.5846 3.3841 36 1 5.9891 -1.9976 4.0997 37 1 7.8920 -2.9210 5.1045 38 1 7.7932 -4.5205 4.3298 39 1 10.4306 -4.9229 6.8682 40 1 8.8595 -3.8696 1.6962 41 1 7.3002 -4.6840 1.9727 42 1 7.7298 -2.0743 0.4472 43 1 7.3177 -3.6539 -0.2632 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595904760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:46 Heat of formation + Delta-G solvation = -48.158995 kcal Electronic energy + Delta-G solvation = -19448.887184 eV Core-core repulsion = 16528.728498 eV Total energy + Delta-G solvation = -2920.158686 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.17827 -37.83122 -35.23311 -33.92290 -32.46366 -30.41814 -28.30514 -27.81131 -26.83758 -24.80524 -23.29764 -22.41731 -21.01519 -20.68021 -19.63205 -16.48399 -16.21199 -15.85436 -15.54147 -15.43818 -14.90074 -14.47246 -14.28727 -14.24412 -13.87132 -13.76577 -12.90250 -12.64976 -12.42619 -12.29028 -12.02613 -12.00149 -11.84378 -11.39588 -11.26898 -11.09416 -10.85788 -10.80502 -10.72341 -10.54293 -10.49909 -10.13787 -9.81318 -9.36183 -8.91445 -8.56868 -8.45942 -7.31306 -6.05422 -4.07232 3.30517 3.36364 3.39747 3.74294 4.12089 4.39154 4.68179 4.89403 4.92905 5.02179 5.13715 5.18222 5.28824 5.30972 5.36200 5.47445 5.50261 5.59509 5.60543 5.65410 5.66138 5.73123 5.77917 5.87844 5.90737 6.04650 6.11703 6.22415 6.34985 6.44845 6.56249 6.61485 6.81419 6.84813 7.21869 7.30204 7.59551 7.75441 8.03083 8.13500 8.49626 8.99974 9.57137 11.05562 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.049629 B = 0.003375 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.045687 B = 8295.352806 C = 8484.153633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.021 3.979 4 C 0.054 3.946 5 C -0.111 4.111 6 C -0.109 4.109 7 C 0.097 3.903 8 H 0.061 0.939 9 C 0.024 3.976 10 N -0.536 5.536 11 C 0.193 3.807 12 C -0.509 4.509 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.028 3.972 21 C 0.064 3.936 22 O -0.387 6.387 23 H 0.023 0.977 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.030 0.970 38 H -0.008 1.008 39 H 0.262 0.738 40 H 0.091 0.909 41 H 0.029 0.971 42 H 0.053 0.947 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.250 8.017 -10.595 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.127 4.127 4 C -0.074 4.074 5 C -0.149 4.149 6 C -0.148 4.148 7 C 0.039 3.961 8 H 0.079 0.921 9 C -0.105 4.105 10 N -0.261 5.261 11 C 0.068 3.932 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.101 4.101 21 C -0.013 4.013 22 O -0.306 6.306 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.009 0.991 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.966 8.079 -11.041 20.277 hybrid contribution 0.591 -0.398 1.233 1.424 sum -14.375 7.681 -9.808 19.022 Atomic orbital electron populations 1.22379 0.87576 1.02206 1.00261 1.61984 1.07600 1.14003 1.43662 1.22444 1.01431 0.88696 1.00169 1.22212 0.96423 0.97971 0.90773 1.21529 0.93350 1.00348 0.99655 1.21544 0.93946 1.00930 0.98334 1.22113 0.94623 0.93814 0.85549 0.92058 1.22699 0.90734 0.99363 0.97669 1.62355 1.09974 1.48050 1.05734 1.19735 0.94658 0.92415 0.86366 1.21144 0.90821 1.38770 1.03993 0.91865 1.25000 0.99023 0.95399 0.95214 1.69961 1.35537 1.40644 1.07663 0.86478 0.85131 0.77517 0.78170 1.20597 1.21291 1.19833 1.22616 1.02197 0.94335 0.90909 1.22689 0.81618 0.99566 0.97377 1.87883 1.24956 1.71681 1.46074 0.95837 0.91523 0.91376 0.90812 0.91647 0.95766 0.90799 0.94974 0.92141 0.90275 0.91218 0.90811 0.95166 0.90647 0.95143 0.99066 0.92879 0.89055 0.95320 0.92896 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.57 60.07 0.57 0.77 16 2 N -0.55 -5.52 5.02 -251.25 -1.26 -6.78 16 3 C 0.02 0.18 9.32 60.06 0.56 0.74 16 4 C 0.05 0.55 4.96 -3.82 -0.02 0.53 16 5 C -0.11 -1.26 5.04 -26.73 -0.13 -1.40 16 6 C -0.11 -1.36 4.93 -26.73 -0.13 -1.49 16 7 C 0.10 1.53 2.81 -26.68 -0.07 1.45 16 8 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 9 C 0.02 0.46 4.93 -3.71 -0.02 0.44 16 10 N -0.54 -11.87 4.72 -235.75 -1.11 -12.99 16 11 C 0.19 5.12 4.72 -4.97 -0.02 5.09 16 12 C -0.51 -14.35 8.48 -34.44 -0.29 -14.64 16 13 H 0.06 1.76 7.12 -52.48 -0.37 1.38 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 16 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 20 C 0.03 0.56 5.46 -3.71 -0.02 0.54 16 21 C 0.06 1.06 7.01 37.21 0.26 1.32 16 22 O -0.39 -6.52 10.01 -35.23 -0.35 -6.87 16 23 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 25 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 26 H 0.07 0.67 6.47 -51.93 -0.34 0.33 16 27 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 30 H 0.03 0.32 8.12 -51.93 -0.42 -0.11 16 31 H 0.06 0.68 6.55 -51.94 -0.34 0.34 16 32 H 0.08 1.03 7.82 -51.93 -0.41 0.63 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 37 H 0.03 0.86 8.04 -51.93 -0.42 0.44 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.09 1.91 6.80 -51.93 -0.35 1.56 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 337.72 15.07 5.09 5.09 Total: -1.00 -30.52 337.72 -9.45 -39.97 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -8.11 Total: -3.77 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 0.58 Total: -5.18 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -1.64 Total: -45.85 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.35 Total: -6.87 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.52 -9.45 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595904760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.188 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds