Wall clock time and date at job start Mon Mar 30 2020 04:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99860 * 2 1 4 4 C 1.46904 * 110.99346 * 123.94894 * 2 1 3 5 5 C 1.53005 * 109.46461 * 170.00359 * 4 2 1 6 6 C 1.53003 * 109.46847 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.46982 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.50668 * 55.08480 * 7 6 5 9 9 C 1.53098 * 109.50512 * 175.21219 * 7 6 5 10 10 N 1.47013 * 109.25801 * 176.78307 * 9 7 6 11 11 C 1.46906 * 111.00056 * 177.60812 * 10 9 7 12 12 C 1.50703 * 109.47109 * 189.68132 * 11 10 9 13 13 H 1.08005 * 119.99876 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99989 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48498 * 109.46997 * 329.99580 * 16 14 12 20 20 C 1.47013 * 110.75363 * 301.38693 * 10 9 7 21 21 C 1.53094 * 109.25905 * 58.61635 * 20 10 9 22 22 O 1.43015 * 109.25875 * 303.14993 * 21 20 10 23 23 H 1.09001 * 109.47571 * 296.05359 * 1 2 3 24 24 H 1.09004 * 109.46751 * 56.05215 * 1 2 3 25 25 H 1.09004 * 109.47065 * 176.04636 * 1 2 3 26 26 H 1.09006 * 109.46965 * 183.95113 * 3 2 1 27 27 H 1.09001 * 109.47414 * 303.94741 * 3 2 1 28 28 H 1.09004 * 109.47717 * 63.94932 * 3 2 1 29 29 H 1.09002 * 109.46959 * 50.00566 * 4 2 1 30 30 H 1.08995 * 109.47541 * 289.99812 * 4 2 1 31 31 H 1.08989 * 109.47495 * 60.00198 * 5 4 2 32 32 H 1.09004 * 109.46935 * 299.99726 * 5 4 2 33 33 H 1.09000 * 109.47639 * 59.99368 * 6 5 4 34 34 H 1.09004 * 109.46802 * 299.99406 * 6 5 4 35 35 H 1.09004 * 109.50555 * 56.85331 * 9 7 6 36 36 H 1.08994 * 109.51209 * 296.72010 * 9 7 6 37 37 H 1.08992 * 109.47459 * 309.68051 * 11 10 9 38 38 H 1.09004 * 109.47040 * 69.68202 * 11 10 9 39 39 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.50993 * 178.55051 * 20 10 9 41 41 H 1.09004 * 109.50304 * 298.67760 * 20 10 9 42 42 H 1.08994 * 109.51023 * 63.08718 * 21 20 10 43 43 H 1.09000 * 109.50626 * 183.17846 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 3.5044 -0.9552 0.9705 6 6 4.0525 -1.7535 2.1551 7 6 5.5614 -1.9434 1.9877 8 1 6.0388 -0.9715 1.8622 9 6 6.1301 -2.6370 3.2284 10 7 7.5653 -2.8861 3.0295 11 6 8.1632 -3.5008 4.2223 12 6 9.6631 -3.5233 4.0776 13 1 10.1259 -3.1208 3.1886 14 6 10.4444 -4.0577 5.0801 15 7 9.8808 -4.5473 6.1628 16 14 12.3036 -4.0849 4.9010 17 1 12.8735 -2.8344 5.4637 18 1 12.8544 -5.2534 5.6335 19 1 12.6609 -4.1886 3.4634 20 6 7.7894 -3.7191 1.8390 21 6 7.2040 -3.0147 0.6123 22 8 5.8160 -2.7527 0.8363 23 1 -0.3634 0.4514 0.9232 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0828 1.3432 -0.0708 27 1 1.5899 1.9163 -0.8525 28 1 1.7043 1.8724 0.9233 29 1 1.5088 -1.7406 1.1757 30 1 1.7974 -0.2247 2.0629 31 1 3.9908 0.0193 0.9325 32 1 3.7023 -1.4966 0.0453 33 1 3.5660 -2.7282 2.1929 34 1 3.8545 -1.2125 3.0805 35 1 5.6144 -3.5846 3.3841 36 1 5.9891 -1.9976 4.0997 37 1 7.8920 -2.9210 5.1045 38 1 7.7932 -4.5205 4.3298 39 1 10.4306 -4.9229 6.8682 40 1 8.8595 -3.8696 1.6962 41 1 7.3002 -4.6840 1.9727 42 1 7.7298 -2.0743 0.4472 43 1 7.3177 -3.6539 -0.2632 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595904760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:46 Heat of formation + Delta-G solvation = -69.797282 kcal Electronic energy + Delta-G solvation = -19449.825491 eV Core-core repulsion = 16528.728498 eV Total energy + Delta-G solvation = -2921.096993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60866 -38.62949 -36.91887 -35.01018 -34.57173 -31.63226 -30.13247 -28.46817 -28.18605 -26.34469 -24.63052 -23.94639 -22.27863 -21.68253 -21.13505 -18.56658 -17.48638 -17.30563 -16.47998 -16.41928 -16.33261 -15.93286 -15.74801 -15.47752 -15.30726 -14.82646 -14.64031 -14.09653 -13.67357 -13.30318 -13.16492 -13.09193 -12.91749 -12.73505 -12.63158 -12.58595 -12.50258 -12.28035 -12.10178 -12.02575 -11.85774 -11.49024 -11.40070 -11.18434 -10.65148 -10.44702 -9.27718 -9.15774 -8.24184 -6.35214 1.40234 1.41972 1.53065 2.37844 2.83048 2.98229 3.08217 3.20878 3.81233 3.99947 4.06955 4.17311 4.21526 4.27911 4.31281 4.34979 4.49032 4.53456 4.59100 4.65890 4.67573 4.74151 4.76481 4.82345 4.86239 4.92659 5.00412 5.02490 5.05023 5.10412 5.14912 5.19269 5.34418 5.47422 5.59604 5.97542 6.11586 6.14106 6.18688 6.26241 6.51406 6.79881 7.34840 8.87384 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.049629 B = 0.003375 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.045687 B = 8295.352806 C = 8484.153633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.566 5.566 3 C 0.020 3.980 4 C 0.058 3.942 5 C -0.100 4.100 6 C -0.102 4.102 7 C 0.103 3.897 8 H 0.065 0.935 9 C 0.022 3.978 10 N -0.543 5.543 11 C 0.208 3.792 12 C -0.526 4.526 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.936 5.936 16 Si 0.973 3.027 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.262 1.262 20 C 0.027 3.973 21 C 0.073 3.927 22 O -0.390 6.390 23 H 0.027 0.973 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.020 0.980 36 H 0.078 0.922 37 H 0.005 0.995 38 H -0.041 1.041 39 H 0.265 0.735 40 H 0.079 0.921 41 H 0.015 0.985 42 H 0.060 0.940 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.331 9.013 -11.921 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.290 5.290 3 C -0.128 4.128 4 C -0.070 4.070 5 C -0.138 4.138 6 C -0.140 4.140 7 C 0.045 3.955 8 H 0.082 0.918 9 C -0.106 4.106 10 N -0.268 5.268 11 C 0.082 3.918 12 C -0.564 4.564 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.797 3.203 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.186 1.186 20 C -0.101 4.101 21 C -0.004 4.004 22 O -0.309 6.309 23 H 0.046 0.954 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.039 0.961 36 H 0.096 0.904 37 H 0.023 0.977 38 H -0.023 1.023 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.034 0.966 42 H 0.079 0.921 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.069 9.089 -12.390 21.522 hybrid contribution 0.559 -0.711 1.654 1.885 sum -14.510 8.378 -10.736 19.900 Atomic orbital electron populations 1.22418 0.86444 1.02650 1.00915 1.61983 1.08783 1.14639 1.43590 1.22464 1.01173 0.88302 1.00826 1.22127 0.95370 0.98282 0.91226 1.21393 0.94392 0.99912 0.98135 1.21514 0.91406 1.01396 0.99686 1.22169 0.96628 0.93083 0.83587 0.91751 1.22837 0.88675 0.99331 0.99778 1.62292 1.12118 1.47640 1.04731 1.19391 0.94569 0.90340 0.87511 1.21443 0.91730 1.38989 1.04239 0.91653 1.25966 1.04447 0.94669 0.94664 1.70093 1.37632 1.41318 1.08538 0.85326 0.78478 0.77781 0.78703 1.19737 1.20754 1.18629 1.22675 1.01685 0.94108 0.91633 1.22714 0.81303 1.00069 0.96299 1.87901 1.25017 1.71818 1.46184 0.95419 0.90560 0.91146 0.91290 0.90633 0.95420 0.90718 0.94424 0.91808 0.91848 0.91376 0.89251 0.96131 0.90357 0.97654 1.02342 0.92586 0.90303 0.96628 0.92124 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.57 127.69 1.22 1.56 16 2 N -0.57 -10.33 5.02 -948.81 -4.76 -15.09 16 3 C 0.02 0.32 9.32 127.69 1.19 1.51 16 4 C 0.06 1.07 4.96 86.30 0.43 1.49 16 5 C -0.10 -2.11 5.04 30.60 0.15 -1.96 16 6 C -0.10 -2.38 4.93 30.59 0.15 -2.23 16 7 C 0.10 3.13 2.81 30.63 0.09 3.22 16 8 H 0.06 1.94 8.14 -2.38 -0.02 1.93 16 9 C 0.02 0.84 4.93 86.31 0.43 1.27 16 10 N -0.54 -24.46 4.72 -899.77 -4.25 -28.71 16 11 C 0.21 11.45 4.72 85.56 0.40 11.85 16 12 C -0.53 -30.17 8.48 25.60 0.22 -29.96 16 13 H 0.07 3.64 7.12 -2.91 -0.02 3.62 16 14 C 0.00 0.03 5.46 84.65 0.46 0.49 16 15 N -0.94 -56.90 13.29 21.45 0.28 -56.62 16 16 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 20 C 0.03 1.10 5.46 86.31 0.47 1.58 16 21 C 0.07 2.28 7.01 72.01 0.50 2.79 16 22 O -0.39 -12.53 10.01 -148.98 -1.49 -14.02 16 23 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 24 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 25 H 0.07 0.95 8.12 -2.38 -0.02 0.93 16 26 H 0.07 1.13 6.47 -2.38 -0.02 1.11 16 27 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 28 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.07 1.36 8.06 -2.39 -0.02 1.34 16 30 H 0.04 0.66 8.12 -2.39 -0.02 0.64 16 31 H 0.06 1.30 6.55 -2.39 -0.02 1.29 16 32 H 0.06 1.55 7.82 -2.38 -0.02 1.54 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 2.86 8.09 -2.39 -0.02 2.84 16 37 H 0.01 0.32 8.04 -2.39 -0.02 0.30 16 38 H -0.04 -2.48 8.12 -2.38 -0.02 -2.50 16 39 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.08 3.33 6.80 -2.39 -0.02 3.32 16 41 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -65.74 337.72 -1.54 -67.28 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.93 Total: 9.20 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 5.72 Total: -8.38 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -8.72 Total: -100.41 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -1.49 Total: -14.02 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -65.74 -1.54 -67.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595904760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.516 kcal (2) G-P(sol) polarization free energy of solvation -65.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds