Wall clock time and date at job start Mon Mar 30 2020 04:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46904 * 110.99991 * 2 1 4 4 C 1.52994 * 109.47264 * 293.95296 * 3 2 1 5 5 C 1.53001 * 109.47367 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.46995 * 180.02562 * 5 4 3 7 7 H 1.07991 * 120.00449 * 359.72153 * 6 5 4 8 8 C 1.37885 * 119.99686 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.72095 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.72528 * 8 6 5 11 11 H 1.48490 * 109.47339 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47239 * 120.00108 * 10 8 6 13 13 H 1.48504 * 109.46636 * 239.99667 * 10 8 6 14 14 C 1.46895 * 111.00045 * 123.95363 * 2 1 3 15 15 C 1.53007 * 109.47110 * 66.04600 * 14 2 1 16 16 H 1.08998 * 109.50392 * 305.08853 * 15 14 2 17 17 C 1.53099 * 109.50714 * 185.00098 * 15 14 2 18 18 N 1.47011 * 109.26071 * 183.21733 * 17 15 14 19 19 C 1.46893 * 111.00408 * 182.39082 * 18 17 15 20 20 C 1.47013 * 110.74843 * 58.61380 * 18 17 15 21 21 C 1.53094 * 109.26029 * 301.38308 * 20 18 17 22 22 O 1.43017 * 109.50288 * 65.21860 * 15 14 2 23 23 H 1.09006 * 109.47090 * 60.00135 * 1 2 3 24 24 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47768 * 299.99914 * 1 2 3 26 26 H 1.08998 * 109.47046 * 173.94972 * 3 2 1 27 27 H 1.09001 * 109.47014 * 53.95173 * 3 2 1 28 28 H 1.08998 * 109.47353 * 59.99865 * 4 3 2 29 29 H 1.09006 * 109.47395 * 300.00120 * 4 3 2 30 30 H 1.08998 * 109.47065 * 59.99602 * 5 4 3 31 31 H 1.09001 * 109.46892 * 299.99866 * 5 4 3 32 32 H 0.97000 * 119.99651 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47202 * 186.04604 * 14 2 1 34 34 H 1.09002 * 109.47442 * 306.04645 * 14 2 1 35 35 H 1.09003 * 109.50595 * 303.15099 * 17 15 14 36 36 H 1.09000 * 109.50875 * 63.23229 * 17 15 14 37 37 H 1.09004 * 109.46847 * 59.99944 * 19 18 17 38 38 H 1.08999 * 109.47450 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47047 * 300.00420 * 19 18 17 40 40 H 1.08999 * 109.50929 * 61.32476 * 20 18 17 41 41 H 1.09001 * 109.50319 * 181.45414 * 20 18 17 42 42 H 1.09003 * 109.50735 * 176.78091 * 21 20 18 43 43 H 1.08997 * 109.51382 * 296.91716 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1803 3.4857 -1.3185 6 6 1.8212 4.1615 -2.6167 7 1 1.2618 3.6246 -3.3684 8 6 2.2114 5.4638 -2.8469 9 7 2.8922 6.1178 -1.9313 10 14 1.7730 6.2990 -4.4592 11 1 1.0102 5.3547 -5.3144 12 1 0.9437 7.4999 -4.1851 13 1 3.0173 6.7062 -5.1600 14 6 1.9954 -0.7659 1.1375 15 6 1.6313 -2.2426 0.9703 16 1 0.5533 -2.3394 0.8416 17 6 2.0698 -3.0212 2.2135 18 7 1.7877 -4.4503 2.0152 19 6 2.1422 -5.2277 3.2100 20 6 2.4892 -4.9598 0.8279 21 6 2.0465 -4.1618 -0.4014 22 8 2.2997 -2.7721 -0.1779 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.0796 1.3444 0.1083 27 1 1.5610 1.9274 0.8309 28 1 0.5472 2.0845 -1.4265 29 1 2.0658 1.5016 -2.1492 30 1 3.2645 3.4582 -1.2104 31 1 1.7463 4.0418 -0.4876 32 1 3.1664 7.0341 -2.0931 33 1 3.0797 -0.6611 1.1756 34 1 1.5610 -0.3872 2.0628 35 1 3.1387 -2.8800 2.3732 36 1 1.5210 -2.6584 3.0825 37 1 1.5611 -4.8716 4.0607 38 1 1.9230 -6.2813 3.0363 39 1 3.2049 -5.1071 3.4199 40 1 3.5649 -4.8496 0.9654 41 1 2.2459 -6.0127 0.6853 42 1 2.6062 -4.4978 -1.2743 43 1 0.9807 -4.3150 -0.5705 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609261724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:16 Heat of formation + Delta-G solvation = -43.379727 kcal Electronic energy + Delta-G solvation = -19418.262797 eV Core-core repulsion = 16498.311355 eV Total energy + Delta-G solvation = -2919.951442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.87886 -37.42462 -35.74115 -33.75712 -32.22872 -30.82598 -29.10416 -27.11410 -26.95246 -24.65330 -24.25854 -22.45584 -20.90298 -20.48645 -19.77348 -16.59088 -16.46462 -16.20488 -15.82141 -15.22181 -15.17852 -14.92276 -14.53263 -14.24774 -13.87984 -13.57555 -13.36980 -12.65519 -12.53833 -12.30622 -12.20819 -11.96094 -11.73741 -11.55695 -11.36431 -11.24264 -11.08194 -10.77080 -10.56300 -10.46513 -10.31426 -9.66215 -9.53230 -9.25314 -8.97697 -8.73113 -8.28944 -7.95182 -5.94362 -3.95795 3.35152 3.42297 3.46201 3.47593 3.70046 4.16331 4.51915 4.68461 4.72420 4.77307 4.92163 4.98607 5.14468 5.15810 5.25818 5.35391 5.39430 5.41561 5.47728 5.49041 5.54950 5.59831 5.71081 5.76469 5.91121 5.94206 6.08268 6.23285 6.41052 6.58661 6.59749 6.79306 6.86323 7.15306 7.23021 7.45709 7.47827 7.75901 7.91370 8.07062 8.50966 9.11848 9.67887 11.17252 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.050232 B = 0.003174 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.285189 B = 8819.799767 C = 9014.382484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.533 5.533 3 C 0.057 3.943 4 C -0.104 4.104 5 C 0.021 3.979 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.054 3.946 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.062 3.938 15 C 0.099 3.901 16 H 0.068 0.932 17 C 0.022 3.978 18 N -0.543 5.543 19 C 0.025 3.975 20 C 0.016 3.984 21 C 0.062 3.938 22 O -0.359 6.359 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.021 0.979 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.259 0.741 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.026 0.974 40 H 0.042 0.958 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.323 -22.511 9.978 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.256 5.256 3 C -0.070 4.070 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.067 4.067 15 C 0.040 3.960 16 H 0.086 0.914 17 C -0.106 4.106 18 N -0.268 5.268 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.016 4.016 22 O -0.277 6.277 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.467 -22.512 9.383 24.514 hybrid contribution 0.283 0.792 0.325 0.902 sum -2.184 -21.720 9.708 23.891 Atomic orbital electron populations 1.22464 0.88029 1.01048 1.01158 1.61964 1.07460 1.14925 1.41295 1.22312 0.99532 0.86015 0.99123 1.21640 1.00016 0.98050 0.94495 1.19082 0.96216 0.89410 0.96932 1.21308 1.34580 0.97488 1.02017 0.92613 1.25037 0.95295 0.97545 0.96735 1.69982 1.38722 1.11141 1.33882 0.86544 0.78135 0.79428 0.83963 1.19711 1.21098 1.21050 1.22064 1.01245 0.90937 0.92480 1.22193 0.96800 0.92573 0.84399 0.91428 1.22814 1.00140 0.88226 0.99463 1.62189 1.57784 1.02863 1.03914 1.22379 0.98909 0.98471 0.92585 1.22849 0.96814 0.99987 0.91569 1.22628 1.00836 0.81929 0.96204 1.88171 1.70916 1.22648 1.45956 0.90574 0.92106 0.96096 0.91302 0.95464 0.93470 0.92534 0.96645 0.96872 0.93156 0.90123 0.93657 0.93741 0.89755 0.91182 0.91239 0.95502 0.93938 0.89846 0.88452 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.13 60.06 0.55 0.85 16 2 N -0.53 -8.56 4.71 -242.92 -1.15 -9.70 16 3 C 0.06 1.05 4.96 -3.82 -0.02 1.03 16 4 C -0.10 -2.26 5.08 -26.73 -0.14 -2.40 16 5 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 6 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 7 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 8 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 10 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.06 0.82 4.63 -3.82 -0.02 0.80 16 15 C 0.10 1.20 2.77 -26.68 -0.07 1.12 16 16 H 0.07 0.84 6.26 -51.93 -0.33 0.51 16 17 C 0.02 0.22 4.95 -3.71 -0.02 0.21 16 18 N -0.54 -5.19 4.99 -242.61 -1.21 -6.40 16 19 C 0.02 0.18 9.60 60.06 0.58 0.76 16 20 C 0.02 0.14 5.66 -3.71 -0.02 0.12 16 21 C 0.06 0.63 7.01 37.21 0.26 0.89 16 22 O -0.36 -4.94 10.42 -35.23 -0.37 -5.30 16 23 H 0.08 1.17 6.47 -51.93 -0.34 0.83 16 24 H 0.06 0.78 6.21 -51.93 -0.32 0.45 16 25 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 27 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 28 H 0.05 1.01 6.55 -51.93 -0.34 0.67 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.08 1.10 7.93 -51.93 -0.41 0.68 16 34 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -31.97 337.07 -9.40 -41.38 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -8.03 Total: -5.31 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 0.55 Total: -10.05 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -1.62 Total: -42.92 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.37 Total: -5.30 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.97 -9.40 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609261724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.001 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds