Wall clock time and date at job start Mon Mar 30 2020 04:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46907 * 110.99955 * 2 1 4 4 C 1.52999 * 109.46637 * 293.95465 * 3 2 1 5 5 C 1.53005 * 109.46586 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46834 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00152 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00091 * 179.97438 * 6 5 4 9 9 N 1.31523 * 119.99730 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00190 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47134 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46965 * 119.99923 * 10 8 6 13 13 H 1.48501 * 109.47181 * 239.99914 * 10 8 6 14 14 C 1.46905 * 111.00348 * 123.95219 * 2 1 3 15 15 C 1.52996 * 109.47179 * 164.00856 * 14 2 1 16 16 H 1.08995 * 109.54635 * 58.38002 * 15 14 2 17 17 C 1.53097 * 109.50408 * 178.49061 * 15 14 2 18 18 N 1.47016 * 109.26011 * 176.78571 * 17 15 14 19 19 C 1.46895 * 111.00299 * 177.60614 * 18 17 15 20 20 C 1.47015 * 110.74832 * 301.37801 * 18 17 15 21 21 C 1.53105 * 109.25635 * 58.61736 * 20 18 17 22 22 O 1.43009 * 109.25664 * 303.14729 * 21 20 18 23 23 H 1.08995 * 109.47429 * 302.02209 * 1 2 3 24 24 H 1.09000 * 109.47176 * 62.02747 * 1 2 3 25 25 H 1.09007 * 109.46786 * 182.02571 * 1 2 3 26 26 H 1.08997 * 109.46922 * 53.95340 * 3 2 1 27 27 H 1.08996 * 109.47081 * 173.95453 * 3 2 1 28 28 H 1.08997 * 109.47363 * 299.99605 * 4 3 2 29 29 H 1.08996 * 109.47395 * 60.00180 * 4 3 2 30 30 H 1.08998 * 109.47255 * 299.99457 * 5 4 3 31 31 H 1.08996 * 109.47209 * 59.99941 * 5 4 3 32 32 H 0.97000 * 119.99940 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.46670 * 44.00645 * 14 2 1 34 34 H 1.08994 * 109.46530 * 284.01099 * 14 2 1 35 35 H 1.08993 * 109.51256 * 56.84364 * 17 15 14 36 36 H 1.09004 * 109.53947 * 296.73512 * 17 15 14 37 37 H 1.08998 * 109.47624 * 59.99782 * 19 18 17 38 38 H 1.08998 * 109.46942 * 299.99598 * 19 18 17 39 39 H 1.08999 * 109.47370 * 180.02562 * 19 18 17 40 40 H 1.09000 * 109.50753 * 178.54583 * 20 18 17 41 41 H 1.08999 * 109.51108 * 298.68226 * 20 18 17 42 42 H 1.09001 * 109.50638 * 183.21546 * 21 20 18 43 43 H 1.08999 * 109.54478 * 63.10813 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0574 -1.3183 5 6 2.1802 3.4856 -1.3185 6 6 1.8222 4.1611 -2.6173 7 1 1.2598 3.6251 -3.3676 8 6 2.2125 5.4632 -2.8476 9 7 2.8969 6.1160 -1.9337 10 14 1.7694 6.3003 -4.4577 11 1 1.0019 5.3576 -5.3108 12 1 0.9417 7.5015 -4.1797 13 1 3.0116 6.7072 -5.1624 14 6 1.9955 -0.7660 1.1376 15 6 3.4728 -1.0839 0.8983 16 1 4.0290 -0.1558 0.7672 17 6 4.0321 -1.8495 2.1004 18 7 5.4294 -2.2194 1.8323 19 6 6.0225 -2.9079 2.9864 20 6 5.5262 -3.0449 0.6196 21 6 4.9519 -2.2673 -0.5677 22 8 3.6038 -1.8893 -0.2762 23 1 -0.3634 0.5449 0.8712 24 1 -0.3633 0.4820 -0.9076 25 1 -0.3633 -1.0271 0.0363 26 1 1.5610 1.9274 0.8309 27 1 3.0796 1.3445 0.1082 28 1 2.0657 1.5015 -2.1492 29 1 0.5471 2.0844 -1.4265 30 1 1.7462 4.0418 -0.4877 31 1 3.2644 3.4582 -1.2105 32 1 3.1712 7.0322 -2.0955 33 1 1.4356 -1.6955 1.2399 34 1 1.8934 -0.1781 2.0497 35 1 3.4419 -2.7511 2.2644 36 1 3.9866 -1.2183 2.9879 37 1 5.4559 -3.8143 3.1995 38 1 5.9957 -2.2501 3.8551 39 1 7.0564 -3.1699 2.7614 40 1 6.5715 -3.2856 0.4256 41 1 4.9599 -3.9656 0.7598 42 1 4.9692 -2.8966 -1.4575 43 1 5.5509 -1.3735 -0.7423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609261725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:18 Heat of formation + Delta-G solvation = -66.707772 kcal Electronic energy + Delta-G solvation = -19671.773987 eV Core-core repulsion = 16750.810965 eV Total energy + Delta-G solvation = -2920.963022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72969 -38.66859 -36.56816 -35.67429 -33.63907 -32.48931 -29.91177 -28.78821 -28.00589 -25.83413 -25.04682 -24.06428 -22.31457 -21.57968 -21.21093 -18.48671 -17.43542 -17.25179 -16.86799 -16.50099 -16.22190 -16.06894 -15.81789 -15.54007 -14.99355 -14.79143 -14.54096 -14.31798 -13.60750 -13.33450 -13.29981 -13.12561 -13.06881 -12.86129 -12.70467 -12.58756 -12.50027 -12.28239 -12.13829 -11.98386 -11.53359 -11.38520 -11.20772 -11.06654 -10.55002 -10.52528 -9.40843 -9.19344 -8.19532 -6.30500 1.40152 1.40739 1.54579 2.41596 2.69545 2.86633 3.09112 3.13348 3.83252 3.96225 3.98839 4.01813 4.20935 4.21813 4.27421 4.40662 4.43465 4.56670 4.56872 4.64075 4.64946 4.66346 4.71620 4.74781 4.83202 4.93726 4.95909 4.97783 5.03758 5.06971 5.11937 5.27141 5.53042 5.74956 5.86410 5.90261 5.97199 6.08591 6.19577 6.27994 6.37143 6.86055 7.38581 8.92710 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.027117 B = 0.003887 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.315774 B = 7202.651416 C = 7589.039460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.068 3.932 4 C -0.088 4.088 5 C 0.027 3.973 6 C -0.542 4.542 7 H 0.058 0.942 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.277 1.277 14 C 0.065 3.935 15 C 0.098 3.902 16 H 0.044 0.956 17 C 0.032 3.968 18 N -0.563 5.563 19 C 0.026 3.974 20 C 0.023 3.977 21 C 0.055 3.945 22 O -0.383 6.383 23 H 0.028 0.972 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.052 0.948 30 H -0.008 1.008 31 H -0.011 1.011 32 H 0.264 0.736 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.045 0.955 42 H 0.112 0.888 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.568 -20.445 9.713 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.060 4.060 4 C -0.126 4.126 5 C -0.011 4.011 6 C -0.580 4.580 7 H 0.076 0.924 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.791 3.209 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.203 1.203 14 C -0.063 4.063 15 C 0.039 3.961 16 H 0.062 0.938 17 C -0.097 4.097 18 N -0.288 5.288 19 C -0.121 4.121 20 C -0.105 4.105 21 C -0.022 4.022 22 O -0.302 6.302 23 H 0.047 0.953 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.010 0.990 31 H 0.007 0.993 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.063 0.937 42 H 0.130 0.870 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.905 -20.158 9.132 22.320 hybrid contribution -0.396 0.627 0.311 0.805 sum 2.508 -19.531 9.444 21.839 Atomic orbital electron populations 1.22417 0.86399 1.02417 1.00899 1.61876 1.08669 1.13190 1.43277 1.22055 0.99251 0.87718 0.96929 1.21366 0.99767 0.95193 0.96230 1.18969 0.94515 0.92147 0.95475 1.21712 1.34931 0.98350 1.02993 0.92402 1.25999 0.94912 0.98248 1.00717 1.70111 1.39397 1.11727 1.36170 0.85380 0.78174 0.78324 0.79058 1.18673 1.20171 1.20265 1.22108 0.93610 0.98699 0.91860 1.22153 0.96044 0.92926 0.84952 0.93795 1.22692 0.88581 0.99944 0.98481 1.62169 1.17460 1.44110 1.05039 1.22419 1.00008 0.97177 0.92517 1.22798 1.02600 0.94652 0.90401 1.22793 0.83012 0.98701 0.97723 1.88068 1.26910 1.70295 1.44930 0.95318 0.91977 0.89854 0.95419 0.92168 0.93589 0.92982 0.98997 0.99260 0.92755 0.88941 0.92195 0.93264 0.88778 0.94910 0.90661 0.90224 0.88129 0.93690 0.86990 0.93801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.27 127.69 1.18 1.90 16 2 N -0.55 -17.14 4.62 -922.47 -4.26 -21.40 16 3 C 0.07 2.54 4.81 86.30 0.41 2.95 16 4 C -0.09 -3.91 5.08 30.60 0.16 -3.76 16 5 C 0.03 1.47 4.97 29.85 0.15 1.62 16 6 C -0.54 -32.18 9.11 25.60 0.23 -31.95 16 7 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 8 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 9 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 10 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 11 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 C 0.07 1.64 4.66 86.30 0.40 2.05 16 15 C 0.10 2.58 2.83 30.63 0.09 2.67 16 16 H 0.04 1.38 6.56 -2.39 -0.02 1.37 16 17 C 0.03 0.65 4.95 86.31 0.43 1.08 16 18 N -0.56 -11.41 4.99 -921.44 -4.59 -16.01 16 19 C 0.03 0.38 9.60 127.69 1.23 1.61 16 20 C 0.02 0.44 5.66 86.32 0.49 0.93 16 21 C 0.05 1.27 7.01 72.02 0.50 1.77 16 22 O -0.38 -11.15 10.37 -148.98 -1.54 -12.69 16 23 H 0.03 0.72 8.12 -2.39 -0.02 0.71 16 24 H 0.06 1.83 6.57 -2.39 -0.02 1.82 16 25 H 0.08 1.85 7.96 -2.38 -0.02 1.83 16 26 H 0.03 1.02 8.11 -2.39 -0.02 1.00 16 27 H 0.06 2.33 6.38 -2.39 -0.02 2.31 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 2.25 6.60 -2.39 -0.02 2.23 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.09 2.02 7.87 -2.39 -0.02 2.00 16 34 H 0.06 1.36 8.05 -2.39 -0.02 1.34 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -68.93 337.47 -1.42 -70.35 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.94 Total: 8.93 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 5.73 Total: -18.74 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -8.57 Total: -95.32 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -1.54 Total: -12.69 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -68.93 -1.42 -70.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609261725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.637 kcal (2) G-P(sol) polarization free energy of solvation -68.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds