Wall clock time and date at job start Mon Mar 30 2020 04:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46954 * 111.00177 * 2 1 4 4 C 1.53054 * 109.36665 * 176.80776 * 3 2 1 5 5 N 1.46952 * 109.35987 * 58.40485 * 4 3 2 6 6 C 1.46908 * 110.99897 * 176.81022 * 5 4 3 7 7 C 1.53003 * 109.46994 * 66.04159 * 6 5 4 8 8 C 1.53000 * 109.46929 * 180.02562 * 7 6 5 9 9 C 1.53010 * 109.46816 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.46649 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00503 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99657 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99776 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00207 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46879 * 59.99486 * 14 12 10 16 16 H 1.48499 * 109.47446 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47087 * 300.00024 * 14 12 10 18 18 C 1.46960 * 110.88051 * 300.67308 * 5 4 3 19 19 C 1.46959 * 111.00175 * 236.19812 * 2 1 3 20 20 H 1.08994 * 109.48769 * 63.22490 * 19 2 1 21 21 C 1.52998 * 109.49160 * 303.15510 * 19 2 1 22 22 O 1.42907 * 109.46719 * 66.94087 * 21 19 2 23 23 H 1.09000 * 109.46796 * 70.71667 * 1 2 3 24 24 H 1.09002 * 109.46926 * 190.70911 * 1 2 3 25 25 H 1.08990 * 109.47370 * 310.71104 * 1 2 3 26 26 H 1.09003 * 109.48874 * 56.83888 * 3 2 1 27 27 H 1.09000 * 109.50530 * 296.78753 * 3 2 1 28 28 H 1.09002 * 109.48835 * 178.36872 * 4 3 2 29 29 H 1.08994 * 109.48863 * 298.43627 * 4 3 2 30 30 H 1.08998 * 109.47384 * 186.04136 * 6 5 4 31 31 H 1.09000 * 109.46752 * 306.04761 * 6 5 4 32 32 H 1.08997 * 109.47456 * 300.00516 * 7 6 5 33 33 H 1.09002 * 109.46635 * 60.00210 * 7 6 5 34 34 H 1.08994 * 109.46799 * 299.99901 * 8 7 6 35 35 H 1.09000 * 109.46916 * 60.00542 * 8 7 6 36 36 H 1.08998 * 109.46884 * 299.99867 * 9 8 7 37 37 H 1.09002 * 109.46901 * 59.99956 * 9 8 7 38 38 H 0.97003 * 119.99374 * 180.02562 * 13 12 10 39 39 H 1.08993 * 109.49130 * 299.35696 * 18 5 4 40 40 H 1.08997 * 109.50692 * 179.30004 * 18 5 4 41 41 H 1.09004 * 109.47368 * 186.94013 * 21 19 2 42 42 H 1.08998 * 109.46839 * 306.94310 * 21 19 2 43 43 H 0.96703 * 113.99869 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3291 0.0804 5 7 4.0501 0.5659 -1.0597 6 6 5.5192 0.5659 -1.0597 7 6 6.0291 -0.2037 0.1604 8 6 7.5591 -0.2032 0.1607 9 6 8.0691 -0.9734 1.3805 10 6 9.5761 -0.9723 1.3811 11 1 10.1161 -0.4727 0.5905 12 6 10.2654 -1.6092 2.3912 13 7 9.6078 -2.2180 3.3537 14 14 12.1334 -1.6085 2.3917 15 1 12.6279 -0.2093 2.4467 16 1 12.6284 -2.3549 3.5763 17 1 12.6290 -2.2603 1.1528 18 6 3.5235 -0.8061 -1.0596 19 6 1.9957 -0.7633 -1.1401 20 1 1.6939 -0.2821 -2.0703 21 6 1.4422 -2.1890 -1.0993 22 8 0.0328 -2.1597 -1.3336 23 1 -0.3633 0.3394 -0.9700 24 1 -0.3633 -1.0098 0.1910 25 1 -0.3633 0.6702 0.7789 26 1 1.6012 1.9129 0.8602 27 1 1.6938 1.8776 -0.9172 28 1 3.9178 2.3448 0.0513 29 1 3.8253 0.8479 1.0107 30 1 5.8825 0.0873 -1.9691 31 1 5.8824 1.5928 -1.0193 32 1 5.6658 0.2747 1.0698 33 1 5.6658 -1.2306 0.1201 34 1 7.9228 -0.6815 -0.7487 35 1 7.9221 0.8238 0.2013 36 1 7.7054 -0.4954 2.2901 37 1 7.7061 -2.0004 1.3395 38 1 10.0929 -2.6658 4.0645 39 1 3.8254 -1.3115 -0.1424 40 1 3.9178 -1.3473 -1.9197 41 1 1.9263 -2.7889 -1.8700 42 1 1.6389 -2.6272 -0.1208 43 1 -0.3861 -3.0312 -1.3215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687589003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:03 Heat of formation + Delta-G solvation = -53.014484 kcal Electronic energy + Delta-G solvation = -19666.665971 eV Core-core repulsion = 16746.296735 eV Total energy + Delta-G solvation = -2920.369236 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.81843 -37.30305 -35.77087 -33.96162 -32.07819 -31.78045 -29.42992 -27.38506 -25.86410 -24.66494 -23.46234 -22.50716 -21.03016 -20.29057 -19.26818 -17.53801 -16.29121 -16.21029 -15.78352 -15.28373 -14.92928 -14.51333 -14.41760 -14.32640 -13.76624 -13.50428 -13.25736 -12.61414 -12.38309 -12.31381 -11.99902 -11.81199 -11.64328 -11.56003 -11.20573 -10.94461 -10.81839 -10.75333 -10.53403 -10.42072 -10.32265 -10.04195 -9.60995 -9.38886 -9.07210 -8.40655 -8.32339 -8.06801 -5.97383 -3.99861 3.34336 3.38523 3.41142 3.73369 3.81665 4.25753 4.47646 4.74495 4.95123 5.04947 5.16559 5.21779 5.26289 5.33783 5.37831 5.43672 5.47100 5.53598 5.58106 5.64496 5.68451 5.84578 5.91731 5.93729 6.05990 6.12336 6.13244 6.30328 6.52644 6.75646 6.92385 6.95072 6.97163 7.13724 7.14535 7.22653 7.36545 7.70570 7.86224 8.03223 8.46195 9.07475 9.64012 11.13858 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.034912 B = 0.003516 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.813961 B = 7962.114057 C = 8220.059575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.538 5.538 3 C 0.057 3.943 4 C 0.050 3.950 5 N -0.539 5.539 6 C 0.055 3.945 7 C -0.154 4.154 8 C -0.106 4.106 9 C 0.022 3.978 10 C -0.521 4.521 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.058 3.942 19 C 0.089 3.911 20 H 0.053 0.947 21 C 0.080 3.920 22 O -0.569 6.569 23 H 0.023 0.977 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.260 0.740 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.762 2.901 -8.991 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.264 5.264 3 C -0.071 4.071 4 C -0.078 4.078 5 N -0.262 5.262 6 C -0.073 4.073 7 C -0.193 4.193 8 C -0.144 4.144 9 C -0.016 4.016 10 C -0.559 4.559 11 H 0.072 0.928 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.071 4.071 19 C -0.020 4.020 20 H 0.071 0.929 21 C 0.002 3.998 22 O -0.375 6.375 23 H 0.042 0.958 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.626 3.456 -8.880 20.922 hybrid contribution 1.019 -0.658 0.175 1.226 sum -17.607 2.798 -8.706 19.840 Atomic orbital electron populations 1.22494 0.86538 1.03366 0.99377 1.62197 1.08477 1.13594 1.42115 1.22185 0.94881 0.89316 1.00686 1.22204 0.93773 0.98676 0.93126 1.62421 1.08470 1.13042 1.42310 1.22291 0.85308 1.01083 0.98609 1.22276 0.98822 1.00191 0.97990 1.21546 0.91755 1.00384 1.00755 1.19087 0.95457 0.94987 0.92026 1.21258 0.92027 1.33863 1.08796 0.92797 1.25036 0.98384 0.95475 0.95612 1.69964 1.35449 1.35633 1.12539 0.86667 0.85871 0.78125 0.77383 1.20256 1.21298 1.20253 1.22094 0.92263 0.90760 1.01936 1.21665 0.94301 0.93077 0.92917 0.92905 1.22177 0.81136 0.96311 1.00173 1.86593 1.21334 1.34274 1.95286 0.95809 0.89346 0.92787 0.90414 0.94376 0.90321 0.93098 0.90819 0.90799 0.92402 0.92343 0.93488 0.93488 0.96834 0.96850 0.93001 0.92766 0.90283 0.92884 0.92403 0.77779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 8.33 60.06 0.50 0.82 16 2 N -0.54 -6.57 4.78 -234.73 -1.12 -7.70 16 3 C 0.06 0.67 5.61 -3.77 -0.02 0.65 16 4 C 0.05 0.65 5.27 -3.77 -0.02 0.63 16 5 N -0.54 -7.24 4.92 -234.46 -1.15 -8.39 16 6 C 0.05 0.78 5.38 -3.82 -0.02 0.76 16 7 C -0.15 -2.63 4.50 -26.73 -0.12 -2.75 16 8 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 11 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 14 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.06 0.74 4.34 -3.76 -0.02 0.72 16 19 C 0.09 1.06 2.38 -67.65 -0.16 0.89 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 C 0.08 0.78 6.35 37.16 0.24 1.01 16 22 O -0.57 -5.02 10.26 -35.23 -0.36 -5.38 16 23 H 0.02 0.27 8.09 -51.93 -0.42 -0.15 16 24 H 0.09 0.94 5.79 -51.93 -0.30 0.64 16 25 H 0.05 0.53 8.01 -51.93 -0.42 0.11 16 26 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 29 H 0.05 0.73 6.63 -51.93 -0.34 0.39 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 32 H 0.06 1.03 6.62 -51.93 -0.34 0.68 16 33 H 0.06 1.02 6.44 -51.93 -0.33 0.69 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.05 0.77 6.45 -51.93 -0.33 0.43 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.37 1.67 9.12 45.56 0.42 2.09 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -31.85 329.85 -9.37 -41.22 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.11 Total: -1.92 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -0.31 Total: -13.03 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -1.54 Total: -42.76 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.36 Total: -5.38 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.85 -9.37 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687589003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.797 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds