Wall clock time and date at job start Mon Mar 30 2020 04:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46954 * 111.00177 * 2 1 4 4 C 1.53054 * 109.36665 * 176.80776 * 3 2 1 5 5 N 1.46952 * 109.35987 * 58.40485 * 4 3 2 6 6 C 1.46908 * 110.99897 * 176.81022 * 5 4 3 7 7 C 1.53003 * 109.46994 * 66.04159 * 6 5 4 8 8 C 1.53000 * 109.46929 * 180.02562 * 7 6 5 9 9 C 1.53010 * 109.46816 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.46649 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00503 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99657 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99776 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00207 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46879 * 59.99486 * 14 12 10 16 16 H 1.48499 * 109.47446 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47087 * 300.00024 * 14 12 10 18 18 C 1.46960 * 110.88051 * 300.67308 * 5 4 3 19 19 C 1.46959 * 111.00175 * 236.19812 * 2 1 3 20 20 H 1.08994 * 109.48769 * 63.22490 * 19 2 1 21 21 C 1.52998 * 109.49160 * 303.15510 * 19 2 1 22 22 O 1.42907 * 109.46719 * 66.94087 * 21 19 2 23 23 H 1.09000 * 109.46796 * 70.71667 * 1 2 3 24 24 H 1.09002 * 109.46926 * 190.70911 * 1 2 3 25 25 H 1.08990 * 109.47370 * 310.71104 * 1 2 3 26 26 H 1.09003 * 109.48874 * 56.83888 * 3 2 1 27 27 H 1.09000 * 109.50530 * 296.78753 * 3 2 1 28 28 H 1.09002 * 109.48835 * 178.36872 * 4 3 2 29 29 H 1.08994 * 109.48863 * 298.43627 * 4 3 2 30 30 H 1.08998 * 109.47384 * 186.04136 * 6 5 4 31 31 H 1.09000 * 109.46752 * 306.04761 * 6 5 4 32 32 H 1.08997 * 109.47456 * 300.00516 * 7 6 5 33 33 H 1.09002 * 109.46635 * 60.00210 * 7 6 5 34 34 H 1.08994 * 109.46799 * 299.99901 * 8 7 6 35 35 H 1.09000 * 109.46916 * 60.00542 * 8 7 6 36 36 H 1.08998 * 109.46884 * 299.99867 * 9 8 7 37 37 H 1.09002 * 109.46901 * 59.99956 * 9 8 7 38 38 H 0.97003 * 119.99374 * 180.02562 * 13 12 10 39 39 H 1.08993 * 109.49130 * 299.35696 * 18 5 4 40 40 H 1.08997 * 109.50692 * 179.30004 * 18 5 4 41 41 H 1.09004 * 109.47368 * 186.94013 * 21 19 2 42 42 H 1.08998 * 109.46839 * 306.94310 * 21 19 2 43 43 H 0.96703 * 113.99869 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3291 0.0804 5 7 4.0501 0.5659 -1.0597 6 6 5.5192 0.5659 -1.0597 7 6 6.0291 -0.2037 0.1604 8 6 7.5591 -0.2032 0.1607 9 6 8.0691 -0.9734 1.3805 10 6 9.5761 -0.9723 1.3811 11 1 10.1161 -0.4727 0.5905 12 6 10.2654 -1.6092 2.3912 13 7 9.6078 -2.2180 3.3537 14 14 12.1334 -1.6085 2.3917 15 1 12.6279 -0.2093 2.4467 16 1 12.6284 -2.3549 3.5763 17 1 12.6290 -2.2603 1.1528 18 6 3.5235 -0.8061 -1.0596 19 6 1.9957 -0.7633 -1.1401 20 1 1.6939 -0.2821 -2.0703 21 6 1.4422 -2.1890 -1.0993 22 8 0.0328 -2.1597 -1.3336 23 1 -0.3633 0.3394 -0.9700 24 1 -0.3633 -1.0098 0.1910 25 1 -0.3633 0.6702 0.7789 26 1 1.6012 1.9129 0.8602 27 1 1.6938 1.8776 -0.9172 28 1 3.9178 2.3448 0.0513 29 1 3.8253 0.8479 1.0107 30 1 5.8825 0.0873 -1.9691 31 1 5.8824 1.5928 -1.0193 32 1 5.6658 0.2747 1.0698 33 1 5.6658 -1.2306 0.1201 34 1 7.9228 -0.6815 -0.7487 35 1 7.9221 0.8238 0.2013 36 1 7.7054 -0.4954 2.2901 37 1 7.7061 -2.0004 1.3395 38 1 10.0929 -2.6658 4.0645 39 1 3.8254 -1.3115 -0.1424 40 1 3.9178 -1.3473 -1.9197 41 1 1.9263 -2.7889 -1.8700 42 1 1.6389 -2.6272 -0.1208 43 1 -0.3861 -3.0312 -1.3215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687589003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:03 Heat of formation + Delta-G solvation = -77.492322 kcal Electronic energy + Delta-G solvation = -19667.727410 eV Core-core repulsion = 16746.296735 eV Total energy + Delta-G solvation = -2921.430675 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79821 -38.24786 -36.82944 -35.70617 -33.92935 -32.70582 -30.84684 -28.82102 -26.88518 -26.09349 -24.74045 -23.69544 -22.21445 -21.96860 -20.35236 -18.45550 -18.24923 -17.18523 -16.82806 -16.49555 -16.41595 -15.89109 -15.74545 -15.46043 -14.89519 -14.51442 -14.30987 -14.09123 -13.79708 -13.68084 -13.39913 -13.18987 -12.87123 -12.78566 -12.59470 -12.41099 -12.25121 -12.20573 -11.95172 -11.70969 -11.58881 -11.38974 -11.26427 -11.13032 -10.75233 -10.56100 -9.38221 -9.20608 -8.20503 -6.32664 1.39119 1.42609 1.50602 2.40418 2.81513 2.92005 3.11911 3.42862 3.80332 4.01418 4.03933 4.13118 4.20602 4.29643 4.31118 4.40414 4.44228 4.52427 4.62910 4.66216 4.67311 4.73818 4.77882 4.85373 4.91292 4.93642 5.02649 5.13308 5.15320 5.27413 5.28616 5.33380 5.53023 5.74605 5.85191 5.95766 5.98776 6.13911 6.17846 6.24607 6.84831 6.89136 7.36945 8.90987 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.034912 B = 0.003516 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.813961 B = 7962.114057 C = 8220.059575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.553 5.553 3 C 0.061 3.939 4 C 0.050 3.950 5 N -0.538 5.538 6 C 0.065 3.935 7 C -0.140 4.140 8 C -0.094 4.094 9 C 0.024 3.976 10 C -0.546 4.546 11 H 0.061 0.939 12 C -0.003 4.003 13 N -0.935 5.935 14 Si 0.967 3.033 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.265 1.265 18 C 0.058 3.942 19 C 0.091 3.909 20 H 0.042 0.958 21 C 0.086 3.914 22 O -0.579 6.579 23 H 0.018 0.982 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.031 0.969 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.052 0.948 36 H -0.015 1.015 37 H -0.014 1.014 38 H 0.263 0.737 39 H 0.036 0.964 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.600 3.336 -10.148 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.278 5.278 3 C -0.068 4.068 4 C -0.078 4.078 5 N -0.261 5.261 6 C -0.063 4.063 7 C -0.179 4.179 8 C -0.132 4.132 9 C -0.013 4.013 10 C -0.584 4.584 11 H 0.080 0.920 12 C -0.200 4.200 13 N -0.575 5.575 14 Si 0.791 3.209 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.190 1.190 18 C -0.070 4.070 19 C -0.018 4.018 20 H 0.060 0.940 21 C 0.008 3.992 22 O -0.388 6.388 23 H 0.036 0.964 24 H 0.108 0.892 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.003 0.997 37 H 0.005 0.995 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -18.489 3.887 -10.053 21.401 hybrid contribution 0.907 -0.821 0.566 1.348 sum -17.581 3.066 -9.486 20.211 Atomic orbital electron populations 1.22460 0.85646 1.03724 0.99331 1.62232 1.09351 1.13858 1.42384 1.22174 0.93993 0.89375 1.01209 1.22245 0.94724 0.98895 0.91950 1.62481 1.07718 1.13494 1.42378 1.22188 0.85906 1.01043 0.97179 1.22119 0.96158 1.00368 0.99296 1.21359 0.94120 0.99602 0.98107 1.19017 0.94865 0.93985 0.93466 1.21726 0.93355 1.34104 1.09235 0.92046 1.26036 1.04135 0.94811 0.95039 1.70108 1.37751 1.36381 1.13291 0.85479 0.78937 0.78684 0.77829 1.19093 1.20816 1.19010 1.22121 0.93173 0.90265 1.01443 1.21641 0.93593 0.94298 0.92257 0.93961 1.22051 0.81797 0.94963 1.00418 1.86535 1.20809 1.36217 1.95212 0.96379 0.89171 0.91892 0.89191 0.94390 0.89249 0.95050 0.89850 0.89939 0.93466 0.93017 0.92770 0.92931 0.99685 0.99521 0.92785 0.94544 0.89274 0.91431 0.92948 0.75498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 8.33 127.69 1.06 1.79 16 2 N -0.55 -13.01 4.78 -896.56 -4.29 -17.30 16 3 C 0.06 1.35 5.61 86.31 0.48 1.84 16 4 C 0.05 1.24 5.27 86.31 0.45 1.70 16 5 N -0.54 -13.85 4.92 -895.70 -4.40 -18.25 16 6 C 0.06 1.75 5.38 86.30 0.46 2.21 16 7 C -0.14 -4.80 4.50 30.60 0.14 -4.66 16 8 C -0.09 -3.88 5.15 30.60 0.16 -3.72 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 11 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 12 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 13 N -0.94 -58.17 13.29 21.45 0.28 -57.88 16 14 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 C 0.06 1.44 4.34 86.31 0.37 1.82 16 19 C 0.09 2.07 2.38 44.92 0.11 2.18 16 20 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 21 C 0.09 1.56 6.35 71.98 0.46 2.02 16 22 O -0.58 -9.29 10.26 -148.98 -1.53 -10.82 16 23 H 0.02 0.38 8.09 -2.39 -0.02 0.36 16 24 H 0.09 1.80 5.79 -2.39 -0.01 1.79 16 25 H 0.06 1.14 8.01 -2.39 -0.02 1.12 16 26 H 0.09 1.76 8.06 -2.39 -0.02 1.74 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 2.00 8.11 -2.39 -0.02 1.98 16 29 H 0.03 0.90 6.63 -2.39 -0.02 0.89 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 32 H 0.05 1.71 6.62 -2.39 -0.02 1.69 16 33 H 0.05 1.83 6.44 -2.39 -0.02 1.81 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.04 1.04 6.45 -2.39 -0.02 1.02 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.39 2.78 9.12 -74.06 -0.68 2.11 16 Total: -1.00 -68.24 329.85 -3.08 -71.32 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.29 Total: 10.83 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 4.55 Total: -24.68 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -8.41 Total: -93.44 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.53 Total: -10.82 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.24 -3.08 -71.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687589003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.177 kcal (2) G-P(sol) polarization free energy of solvation -68.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds