Wall clock time and date at job start Mon Mar 30 2020 04:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00419 * 2 1 4 4 C 1.52999 * 109.47312 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46826 * 67.05191 * 4 3 2 6 6 C 1.36931 * 120.00214 * 84.89052 * 5 4 3 7 7 H 1.08000 * 119.99630 * 38.64928 * 6 5 4 8 8 C 1.38813 * 120.00302 * 218.64919 * 6 5 4 9 9 N 1.31619 * 119.99967 * 214.43257 * 8 6 5 10 10 Si 1.86797 * 120.00023 * 34.43098 * 8 6 5 11 11 H 1.48495 * 109.47134 * 94.60515 * 10 8 6 12 12 H 1.48501 * 109.47203 * 214.60835 * 10 8 6 13 13 H 1.48504 * 109.47249 * 334.60777 * 10 8 6 14 14 C 1.46500 * 119.99786 * 264.89398 * 5 4 3 15 15 C 1.53002 * 109.47297 * 266.45842 * 14 5 4 16 16 C 1.53111 * 109.52612 * 184.97847 * 15 14 5 17 17 C 1.53038 * 109.27882 * 182.44319 * 16 15 14 18 18 N 1.46848 * 109.52552 * 59.17716 * 17 16 15 19 19 C 1.46898 * 111.00003 * 174.16485 * 18 17 16 20 20 C 1.46851 * 111.19446 * 298.25684 * 18 17 16 21 21 C 1.53039 * 109.52234 * 61.74420 * 20 18 17 22 22 H 1.08995 * 109.46793 * 299.99777 * 1 2 3 23 23 H 1.08997 * 109.46830 * 59.99675 * 1 2 3 24 24 H 1.08999 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46418 * 60.00086 * 3 2 1 26 26 H 1.08993 * 109.47071 * 300.00709 * 3 2 1 27 27 H 1.08999 * 109.47260 * 307.05665 * 4 3 2 28 28 H 1.08993 * 109.47347 * 187.04653 * 4 3 2 29 29 H 0.96999 * 119.99793 * 179.97438 * 9 8 6 30 30 H 1.08998 * 109.47307 * 146.45733 * 14 5 4 31 31 H 1.08999 * 109.47305 * 26.46018 * 14 5 4 32 32 H 1.08997 * 109.57215 * 305.13923 * 15 14 5 33 33 H 1.08996 * 109.50920 * 62.49757 * 16 15 14 34 34 H 1.09007 * 109.53588 * 302.39616 * 16 15 14 35 35 H 1.09000 * 109.45949 * 299.16128 * 17 16 15 36 36 H 1.08996 * 109.46323 * 179.19282 * 17 16 15 37 37 H 1.09000 * 109.47351 * 59.99416 * 19 18 17 38 38 H 1.09000 * 109.47090 * 299.99885 * 19 18 17 39 39 H 1.08997 * 109.47076 * 179.97438 * 19 18 17 40 40 H 1.09000 * 109.45980 * 181.75749 * 20 18 17 41 41 H 1.09000 * 109.46677 * 301.72518 * 20 18 17 42 42 H 1.08997 * 109.50142 * 180.87332 * 21 20 18 43 43 H 1.08998 * 109.53426 * 60.77989 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9803 0.6088 -1.2710 6 6 4.1739 1.4181 -2.3585 7 1 4.6104 2.3978 -2.2316 8 6 3.8092 0.9794 -3.6240 9 7 4.5202 1.3334 -4.6735 10 14 2.3093 -0.1133 -3.8374 11 1 1.1287 0.7252 -4.1661 12 1 2.5530 -1.0788 -4.9391 13 1 2.0539 -0.8552 -2.5765 14 6 4.2177 -0.8327 -1.3792 15 6 5.6950 -1.1278 -1.1117 16 6 5.9703 -2.6156 -1.3458 17 6 7.4346 -2.9163 -1.0180 18 7 7.7066 -2.5640 0.3814 19 6 9.0643 -2.9672 0.7714 20 6 7.4948 -1.1304 0.6188 21 6 6.0322 -0.7765 0.3400 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6887 1.8462 0.8901 26 1 1.6887 1.8463 -0.8899 27 1 3.8485 0.5386 0.8210 28 1 3.9783 2.1725 0.1267 29 1 4.2655 1.0265 -5.5577 30 1 3.9557 -1.1699 -2.3821 31 1 3.6040 -1.3580 -0.6474 32 1 6.3137 -0.5328 -1.7835 33 1 5.7727 -2.8627 -2.3888 34 1 5.3235 -3.2117 -0.7018 35 1 8.0807 -2.3308 -1.6721 36 1 7.6302 -3.9777 -1.1699 37 1 9.7905 -2.4604 0.1359 38 1 9.1704 -4.0458 0.6556 39 1 9.2396 -2.6942 1.8120 40 1 7.7341 -0.8948 1.6558 41 1 8.1406 -0.5533 -0.0429 42 1 5.8789 0.2905 0.5013 43 1 5.3860 -1.3424 1.0109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691576299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:14 Heat of formation + Delta-G solvation = -45.588228 kcal Electronic energy + Delta-G solvation = -20780.962835 eV Core-core repulsion = 17860.915626 eV Total energy + Delta-G solvation = -2920.047210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.14865 -38.86144 -37.34514 -34.60896 -33.63574 -31.69320 -30.70285 -28.67006 -27.17227 -26.08433 -25.01741 -23.87030 -22.79079 -21.79413 -20.49889 -18.66053 -17.35336 -17.01504 -16.81136 -16.62715 -15.94557 -15.89826 -15.50581 -15.46216 -15.03975 -14.76347 -14.62804 -14.05123 -13.82518 -13.43569 -13.24241 -13.01420 -12.86429 -12.78073 -12.59422 -12.39479 -12.30653 -12.07687 -12.03750 -11.86634 -11.56778 -11.40115 -11.11518 -10.89182 -10.53470 -10.41697 -9.26523 -8.61542 -8.24660 -5.44755 1.33040 1.41823 1.60834 2.49223 2.97940 3.06353 3.09756 3.49376 3.99834 4.01777 4.10279 4.30281 4.39344 4.46846 4.48841 4.56724 4.57805 4.62028 4.65559 4.67608 4.70617 4.74275 4.79969 4.89544 4.90582 4.93745 5.01595 5.03203 5.12796 5.17928 5.20985 5.28479 5.34202 5.50524 5.70614 5.97488 6.15658 6.21131 6.23814 6.42581 7.08985 7.74348 8.21708 8.95897 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.019056 B = 0.007538 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.013370 B = 3713.630362 C = 4405.752078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.043 3.957 4 C 0.144 3.856 5 N -0.600 5.600 6 C -0.255 4.255 7 H 0.041 0.959 8 C 0.002 3.998 9 N -0.928 5.928 10 Si 0.896 3.104 11 H -0.303 1.303 12 H -0.306 1.306 13 H -0.232 1.232 14 C 0.168 3.832 15 C -0.099 4.099 16 C -0.108 4.108 17 C 0.063 3.937 18 N -0.549 5.549 19 C 0.025 3.975 20 C 0.061 3.939 21 C -0.092 4.092 22 H 0.059 0.941 23 H 0.024 0.976 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.017 0.983 36 H 0.089 0.911 37 H 0.019 0.981 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.015 0.985 42 H 0.062 0.938 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 -7.536 13.279 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.036 4.036 4 C 0.018 3.982 5 N -0.322 5.322 6 C -0.385 4.385 7 H 0.058 0.942 8 C -0.197 4.197 9 N -0.571 5.571 10 Si 0.723 3.277 11 H -0.232 1.232 12 H -0.233 1.233 13 H -0.155 1.155 14 C 0.043 3.957 15 C -0.120 4.120 16 C -0.147 4.147 17 C -0.065 4.065 18 N -0.274 5.274 19 C -0.123 4.123 20 C -0.067 4.067 21 C -0.129 4.129 22 H 0.077 0.923 23 H 0.042 0.958 24 H 0.110 0.890 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.036 0.964 36 H 0.107 0.893 37 H 0.038 0.962 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.034 0.966 42 H 0.080 0.920 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.139 -7.960 13.435 15.658 hybrid contribution -0.488 0.698 -1.714 1.914 sum 0.651 -7.262 11.722 13.804 Atomic orbital electron populations 1.22827 0.81101 1.03103 0.99941 1.87878 1.20155 1.28977 1.95342 1.23317 0.97208 0.84064 0.98980 1.21231 0.90046 0.98581 0.88307 1.44071 1.76916 1.03366 1.07823 1.18497 1.34063 1.00370 0.85564 0.94173 1.25893 0.99303 0.99144 0.95314 1.70167 1.37677 1.49423 0.99819 0.86515 0.83513 0.79325 0.78314 1.23171 1.23334 1.15470 1.21019 0.93326 0.83795 0.97605 1.21603 0.98242 0.95208 0.96965 1.21562 0.96563 0.95931 1.00624 1.22024 0.95721 1.00806 0.87942 1.61995 1.27194 1.17068 1.21138 1.22414 0.87214 1.01539 1.01117 1.22085 0.96448 0.87342 1.00840 1.21452 0.95479 1.00689 0.95309 0.92253 0.95765 0.88968 0.91650 0.95870 0.90773 0.91663 0.93149 0.96528 0.92666 0.94915 0.92748 0.90718 0.96439 0.89299 0.96200 0.90277 0.90247 0.89375 0.96641 0.91954 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.00 16 2 O -0.40 -14.78 10.36 -148.98 -1.54 -16.32 16 3 C 0.04 1.53 6.25 71.98 0.45 1.97 16 4 C 0.14 5.40 5.02 86.38 0.43 5.83 16 5 N -0.60 -27.64 1.78 -702.01 -1.25 -28.90 16 6 C -0.26 -14.23 9.74 84.03 0.82 -13.41 16 7 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 8 C 0.00 0.11 5.05 84.86 0.43 0.54 16 9 N -0.93 -58.08 13.97 21.65 0.30 -57.78 16 10 Si 0.90 46.33 26.34 68.60 1.81 48.14 16 11 H -0.30 -15.87 7.11 99.48 0.71 -15.16 16 12 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 13 H -0.23 -11.42 6.02 99.48 0.60 -10.82 16 14 C 0.17 7.28 3.71 86.38 0.32 7.60 16 15 C -0.10 -3.82 2.45 -10.72 -0.03 -3.84 16 16 C -0.11 -3.55 5.38 30.64 0.16 -3.38 16 17 C 0.06 1.79 5.46 86.33 0.47 2.26 16 18 N -0.55 -14.60 4.91 -922.58 -4.53 -19.13 16 19 C 0.02 0.51 9.59 127.69 1.22 1.73 16 20 C 0.06 1.71 5.46 86.33 0.47 2.19 16 21 C -0.09 -2.96 4.37 30.65 0.13 -2.82 16 22 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.07 1.85 8.14 -2.38 -0.02 1.84 16 26 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 2.47 6.65 -2.39 -0.02 2.46 16 28 H 0.07 2.38 8.08 -2.39 -0.02 2.36 16 29 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.02 0.80 4.45 -2.39 -0.01 0.79 16 31 H 0.05 2.27 7.73 -2.39 -0.02 2.26 16 32 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.09 2.13 8.12 -2.39 -0.02 2.11 16 37 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 40 H 0.09 2.10 8.09 -2.39 -0.02 2.08 16 41 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.06 2.12 6.48 -2.39 -0.02 2.10 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -66.18 330.98 1.75 -64.43 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.83 Total: 8.88 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 6.14 Total: 0.67 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -5.48 Total: -105.81 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -1.54 Total: -16.32 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.81 Total: 48.14 kcal Total: -66.18 1.75 -64.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691576299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.845 kcal (2) G-P(sol) polarization free energy of solvation -66.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds