Wall clock time and date at job start Mon Mar 30 2020 04:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46910 * 109.47302 * 2 1 4 4 C 1.46898 * 111.00050 * 199.62304 * 3 2 1 5 5 C 1.52998 * 109.46909 * 66.04799 * 4 3 2 6 6 O 1.42893 * 109.47336 * 64.99881 * 5 4 3 7 7 C 1.42908 * 113.99906 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47139 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99691 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00145 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99482 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00042 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46958 * 60.00508 * 12 10 8 14 14 H 1.48500 * 109.46915 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47609 * 300.00588 * 12 10 8 16 16 C 1.46895 * 110.99664 * 75.66726 * 3 2 1 17 17 C 1.53005 * 109.46961 * 199.73026 * 16 3 2 18 18 C 1.53930 * 113.73355 * 87.31929 * 17 16 3 19 19 N 1.48296 * 86.06515 * 138.13009 * 18 17 16 20 20 C 1.46903 * 111.01037 * 222.42150 * 19 18 17 21 21 C 1.47965 * 90.75505 * 335.30888 * 19 18 17 22 22 H 1.09003 * 109.47076 * 174.75413 * 1 2 3 23 23 H 1.09001 * 109.46905 * 294.74961 * 1 2 3 24 24 H 1.09000 * 109.47665 * 54.74926 * 1 2 3 25 25 H 1.09006 * 109.47443 * 240.00247 * 2 1 3 26 26 H 1.09002 * 109.47727 * 119.99848 * 2 1 3 27 27 H 1.09002 * 109.46723 * 186.04717 * 4 3 2 28 28 H 1.08994 * 109.47239 * 306.04393 * 4 3 2 29 29 H 1.09006 * 109.46915 * 185.00108 * 5 4 3 30 30 H 1.09003 * 109.47179 * 304.99238 * 5 4 3 31 31 H 1.08999 * 109.46955 * 299.99955 * 7 6 5 32 32 H 1.08999 * 109.46855 * 59.99936 * 7 6 5 33 33 H 0.97000 * 119.99344 * 179.97438 * 11 10 8 34 34 H 1.08997 * 109.47334 * 79.73231 * 16 3 2 35 35 H 1.09003 * 109.47756 * 319.73182 * 16 3 2 36 36 H 1.09004 * 112.93663 * 315.75616 * 17 16 3 37 37 H 1.09000 * 113.76203 * 252.50688 * 18 17 16 38 38 H 1.09005 * 113.76386 * 23.86924 * 18 17 16 39 39 H 1.08996 * 109.47369 * 159.35201 * 20 19 18 40 40 H 1.09001 * 109.46428 * 279.35110 * 20 19 18 41 41 H 1.08997 * 109.46998 * 39.34672 * 20 19 18 42 42 H 1.08993 * 113.76159 * 270.37283 * 21 19 18 43 43 H 1.08999 * 113.86092 * 139.01235 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4130 1.4508 -0.4606 5 6 3.4834 1.0398 -1.9326 6 8 2.7770 1.9940 -2.7279 7 6 2.7821 1.7022 -4.1269 8 6 2.0123 2.7669 -4.8649 9 1 1.5643 3.5848 -4.3201 10 6 1.8807 2.6975 -6.2356 11 7 2.4267 1.7017 -6.8989 12 14 0.9258 4.0169 -7.1503 13 1 1.5611 5.3389 -6.9174 14 1 0.9312 3.7138 -8.6040 15 1 -0.4743 4.0468 -6.6565 16 6 1.8750 1.9945 1.3287 17 6 1.9162 3.5184 1.1981 18 6 0.5424 4.1534 0.9169 19 7 0.9396 5.1977 1.8920 20 6 -0.1770 5.5375 2.7840 21 6 1.8749 4.2573 2.5479 22 1 -0.3633 -1.0234 -0.0940 23 1 -0.3633 0.4302 0.9333 24 1 -0.3634 0.5931 -0.8392 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.7847 2.4694 -0.3495 28 1 4.0250 0.7738 0.1354 29 1 4.5256 1.0027 -2.2500 30 1 3.0305 0.0562 -2.0574 31 1 3.8098 1.6792 -4.4894 32 1 2.3148 0.7324 -4.2974 33 1 2.3338 1.6527 -7.8632 34 1 2.6906 1.6628 1.9713 35 1 0.9229 1.6928 1.7653 36 1 2.7051 3.8664 0.5313 37 1 0.4294 4.5221 -0.1026 38 1 -0.2990 3.5432 1.2454 39 1 0.2103 6.0044 3.6895 40 1 -0.8491 6.2300 2.2770 41 1 -0.7209 4.6303 3.0470 42 1 1.4224 3.6774 3.3523 43 1 2.8262 4.7074 2.8314 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692704210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:02 Heat of formation + Delta-G solvation = -33.062434 kcal Electronic energy + Delta-G solvation = -19788.223169 eV Core-core repulsion = 16868.719119 eV Total energy + Delta-G solvation = -2919.504050 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.95590 -39.16895 -37.68110 -34.89286 -32.62254 -32.07090 -29.97926 -28.76845 -26.99768 -26.58438 -24.46686 -23.83941 -23.26600 -21.32273 -20.43928 -18.59854 -17.39076 -17.38525 -16.93522 -16.46086 -16.26713 -15.95648 -15.90354 -15.26435 -14.96419 -14.79268 -14.38333 -13.93280 -13.64993 -13.59207 -13.44275 -13.04194 -12.89213 -12.75224 -12.65523 -12.44930 -12.31190 -12.26059 -11.95955 -11.86880 -11.64134 -11.40702 -11.28443 -11.20676 -10.81441 -10.13052 -9.73741 -9.05845 -8.30096 -6.41505 1.39670 1.44575 1.52886 2.36152 2.88653 3.03577 3.05217 3.28648 3.67720 3.79897 4.05943 4.19659 4.22974 4.26453 4.36962 4.40303 4.50705 4.54297 4.56591 4.61886 4.66824 4.68999 4.72200 4.76309 4.85226 4.85739 4.96678 4.98711 4.99394 5.04404 5.15712 5.21755 5.38935 5.41520 5.43242 5.57608 6.00155 6.15642 6.22166 6.31632 6.60012 6.89756 7.30693 8.82204 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.017308 B = 0.005099 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.351472 B = 5490.365637 C = 6398.953014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.048 3.952 3 N -0.548 5.548 4 C 0.070 3.930 5 C 0.056 3.944 6 O -0.392 6.392 7 C 0.211 3.789 8 C -0.543 4.543 9 H 0.058 0.942 10 C 0.008 3.992 11 N -0.932 5.932 12 Si 0.980 3.020 13 H -0.266 1.266 14 H -0.273 1.273 15 H -0.267 1.267 16 C 0.072 3.928 17 C -0.105 4.105 18 C 0.015 3.985 19 N -0.512 5.512 20 C -0.009 4.009 21 C 0.016 3.984 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.038 0.962 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.039 0.961 31 H -0.018 1.018 32 H -0.019 1.019 33 H 0.270 0.730 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.087 0.913 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 -0.604 21.293 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.079 4.079 3 N -0.273 5.273 4 C -0.058 4.058 5 C -0.021 4.021 6 O -0.312 6.312 7 C 0.136 3.864 8 C -0.581 4.581 9 H 0.076 0.924 10 C -0.191 4.191 11 N -0.571 5.571 12 Si 0.803 3.197 13 H -0.191 1.191 14 H -0.198 1.198 15 H -0.192 1.192 16 C -0.056 4.056 17 C -0.124 4.124 18 C -0.113 4.113 19 N -0.234 5.234 20 C -0.158 4.158 21 C -0.113 4.113 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.057 0.943 31 H -0.001 1.001 32 H -0.001 1.001 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.510 0.399 20.657 20.812 hybrid contribution -0.032 -0.970 -0.271 1.008 sum -2.542 -0.571 20.386 20.552 Atomic orbital electron populations 1.21703 0.94640 1.01689 1.01680 1.22133 0.96641 0.88488 1.00682 1.61798 1.20238 1.18718 1.26594 1.22046 0.89378 1.02104 0.92247 1.22652 0.95005 0.92305 0.92180 1.87912 1.75301 1.49336 1.18620 1.19754 0.94053 0.94937 0.77704 1.21329 1.34425 1.09855 0.92476 0.92354 1.25917 0.96603 0.98693 0.97839 1.70065 1.45591 1.32701 1.08752 0.85289 0.78921 0.78507 0.77033 1.19103 1.19807 1.19154 1.22132 1.01767 0.92981 0.88738 1.22870 0.97751 0.94548 0.97265 1.23944 0.97394 0.92446 0.97550 1.68522 1.12814 1.30535 1.11565 1.22870 0.94317 1.01080 0.97561 1.23985 0.98529 0.93178 0.95616 0.91303 0.91834 0.94310 0.92280 0.92997 0.90511 0.91328 0.93898 0.94325 1.00052 1.00140 0.92103 0.93003 0.89869 0.90309 0.92028 0.90418 0.90369 0.91678 0.93907 0.89463 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.95 71.98 0.72 -2.62 16 2 C 0.05 1.21 5.55 86.30 0.48 1.69 16 3 N -0.55 -15.50 4.31 -896.22 -3.87 -19.37 16 4 C 0.07 2.04 5.17 86.30 0.45 2.49 16 5 C 0.06 2.13 6.02 71.98 0.43 2.56 16 6 O -0.39 -19.93 10.27 -148.98 -1.53 -21.46 16 7 C 0.21 12.30 5.69 71.24 0.41 12.70 16 8 C -0.54 -33.51 9.43 25.60 0.24 -33.27 16 9 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 10 C 0.01 0.46 5.46 84.66 0.46 0.92 16 11 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 12 Si 0.98 45.74 29.54 68.60 2.03 47.77 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 C 0.07 1.54 4.66 86.31 0.40 1.94 16 17 C -0.10 -2.52 3.93 -10.15 -0.04 -2.56 16 18 C 0.02 0.40 7.54 86.34 0.65 1.05 16 19 N -0.51 -12.18 6.56 -933.13 -6.12 -18.30 16 20 C -0.01 -0.17 9.65 127.69 1.23 1.06 16 21 C 0.02 0.30 7.55 86.41 0.65 0.95 16 22 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.06 1.27 6.89 -2.39 -0.02 1.26 16 24 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.70 5.82 -2.38 -0.01 1.69 16 26 H 0.05 1.04 8.00 -2.39 -0.02 1.02 16 27 H 0.08 2.32 6.63 -2.39 -0.02 2.31 16 28 H 0.07 1.57 8.12 -2.39 -0.02 1.55 16 29 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.04 1.45 6.08 -2.39 -0.01 1.44 16 31 H -0.02 -1.11 8.14 -2.39 -0.02 -1.12 16 32 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.05 0.94 8.00 -2.39 -0.02 0.92 16 35 H 0.08 1.59 6.27 -2.39 -0.01 1.57 16 36 H 0.08 2.31 6.78 -2.38 -0.02 2.29 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 1.80 7.39 -2.38 -0.02 1.78 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.04 0.68 7.62 -2.39 -0.02 0.67 16 42 H 0.09 1.28 7.88 -2.39 -0.02 1.26 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -69.61 340.78 -2.18 -71.79 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.95 Total: 9.68 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 6.08 Total: -13.08 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -9.70 Total: -94.69 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.53 Total: -21.46 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -69.61 -2.18 -71.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692704210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.729 kcal (2) G-P(sol) polarization free energy of solvation -69.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds