Wall clock time and date at job start Mon Mar 30 2020 04:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30540 * 1 3 3 Si 1.86804 * 119.99633 * 2 1 4 4 H 1.48499 * 109.46884 * 269.99510 * 3 2 1 5 5 H 1.48500 * 109.47045 * 29.99654 * 3 2 1 6 6 H 1.48503 * 109.46780 * 149.99541 * 3 2 1 7 7 C 1.40336 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99889 * 180.02562 * 7 2 1 9 9 C 1.41829 * 120.00052 * 0.02562 * 7 2 1 10 10 O 1.21787 * 120.00071 * 5.24019 * 9 7 2 11 11 C 1.47693 * 119.99761 * 185.24696 * 9 7 2 12 12 C 1.40000 * 120.16057 * 265.54340 * 11 9 7 13 13 F 1.35104 * 120.12833 * 0.02562 * 12 11 9 14 14 C 1.38422 * 119.74579 * 179.97438 * 12 11 9 15 15 F 1.35102 * 119.95881 * 180.02562 * 14 12 11 16 16 C 1.38497 * 120.08158 * 0.02693 * 14 12 11 17 17 C 1.38504 * 120.33820 * 0.02562 * 16 14 12 18 18 C 1.37816 * 120.25009 * 0.24772 * 17 16 14 19 19 N 1.48021 * 120.04559 * 179.70615 * 18 17 16 20 20 O 1.21799 * 119.99773 * 5.80054 * 19 18 17 21 21 O 1.21795 * 119.99948 * 185.80604 * 19 18 17 22 22 H 0.96994 * 120.00206 * 0.02562 * 1 2 3 23 23 H 1.08010 * 119.83235 * 179.97438 * 16 14 12 24 24 H 1.07996 * 119.87824 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4366 2.6527 0.7000 6 1 3.5368 1.4403 0.7002 7 6 2.0071 -1.2153 0.0005 8 1 3.0871 -1.2153 0.0010 9 6 1.2980 -2.4436 0.0005 10 8 0.0840 -2.4459 -0.0963 11 6 2.0319 -3.7199 0.1181 12 6 2.3961 -4.4304 -1.0320 13 9 2.0782 -3.9509 -2.2544 14 6 3.0842 -5.6254 -0.9118 15 9 3.4383 -6.3142 -2.0188 16 6 3.4102 -6.1158 0.3417 17 6 3.0505 -5.4163 1.4818 18 6 2.3603 -4.2280 1.3784 19 7 1.9725 -3.4875 2.6000 20 8 2.3534 -3.8712 3.6914 21 8 1.2725 -2.4945 2.5138 22 1 -0.4850 0.8400 -0.0004 23 1 3.9468 -7.0489 0.4308 24 1 3.3081 -5.8058 2.4556 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694944640.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:09 Heat of formation + Delta-G solvation = -100.649843 kcal Electronic energy + Delta-G solvation = -18959.889930 eV Core-core repulsion = 15285.316513 eV Total energy + Delta-G solvation = -3674.573416 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.033 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.51105 -48.46086 -41.58373 -38.86734 -36.70258 -35.75757 -32.83777 -31.42982 -30.89229 -27.28602 -25.96059 -23.88166 -22.24193 -20.56017 -18.96390 -18.26125 -17.79590 -16.99894 -16.94211 -16.37737 -16.27433 -16.10873 -15.36824 -14.87415 -14.45968 -13.98703 -13.67234 -13.29217 -12.95292 -12.27631 -11.96841 -11.81296 -11.51615 -11.07987 -10.90249 -10.62870 -10.49080 -10.42262 -10.33525 -9.21583 -9.05366 -8.89081 -7.85902 -6.49261 -5.10346 0.06728 0.81399 1.62270 1.87009 2.99730 3.08772 3.12501 3.16109 3.52730 3.87649 3.94654 4.17137 4.39787 4.65875 4.75268 5.15009 5.35385 5.53609 5.61545 5.83871 5.92520 6.43895 6.91609 7.08640 7.80320 8.27649 8.46340 8.63683 9.97797 10.31912 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.009306 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.450223 B = 3007.997832 C = 3813.632545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.088 3.912 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.501 4.501 8 H 0.069 0.931 9 C 0.391 3.609 10 O -0.509 6.509 11 C -0.030 4.030 12 C 0.080 3.920 13 F -0.106 7.106 14 C 0.110 3.890 15 F -0.119 7.119 16 C -0.146 4.146 17 C -0.043 4.043 18 C -0.023 4.023 19 N 0.023 4.977 20 O -0.201 6.201 21 O -0.078 6.078 22 H 0.279 0.721 23 H 0.162 0.838 24 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.510 -8.130 0.354 11.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.138 4.138 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.532 4.532 8 H 0.087 0.913 9 C 0.284 3.716 10 O -0.396 6.396 11 C -0.034 4.034 12 C 0.058 3.942 13 F -0.084 7.084 14 C 0.090 3.910 15 F -0.097 7.097 16 C -0.165 4.165 17 C -0.062 4.062 18 C -0.107 4.107 19 N 0.546 4.454 20 O -0.403 6.403 21 O -0.311 6.311 22 H 0.090 0.910 23 H 0.180 0.820 24 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.995 -8.558 -0.294 11.057 hybrid contribution 0.586 0.718 -0.144 0.938 sum 7.581 -7.840 -0.438 10.915 Atomic orbital electron populations 1.69900 1.07508 1.28687 1.28783 1.25853 0.94715 1.00768 0.92459 0.86274 0.80479 0.80511 0.79221 1.19287 1.19663 1.18481 1.20557 0.94416 0.90514 1.47665 0.91259 1.17971 0.88835 0.83628 0.81152 1.90611 1.13704 1.86230 1.49082 1.22196 0.92466 1.00084 0.88650 1.17378 1.02218 0.92999 0.81568 1.91599 1.90610 1.87534 1.38640 1.17895 0.98536 0.90430 0.84160 1.91558 1.89466 1.77946 1.50744 1.20884 1.04389 1.02490 0.88748 1.20783 0.93431 0.91306 1.00716 1.20929 1.08151 0.96339 0.85271 1.43334 0.99669 1.00870 1.01550 1.94439 1.59500 1.72410 1.13912 1.94795 1.30878 1.12558 1.92831 0.90988 0.82014 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -20.18 11.75 55.57 0.65 -19.53 14 2 C 0.09 2.31 5.50 -17.31 -0.10 2.21 14 3 Si 0.91 19.12 29.56 -169.99 -5.03 14.10 14 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 14 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 14 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 14 7 C -0.50 -13.57 8.67 -37.42 -0.32 -13.89 14 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 14 9 C 0.39 10.73 3.63 -34.35 -0.12 10.61 14 10 O -0.51 -15.86 15.62 -0.32 -0.01 -15.86 14 11 C -0.03 -0.68 5.52 -104.79 -0.58 -1.26 14 12 C 0.08 1.56 7.30 -38.85 -0.28 1.28 14 13 F -0.11 -2.24 16.75 2.25 0.04 -2.20 14 14 C 0.11 1.69 7.30 -39.42 -0.29 1.40 14 15 F -0.12 -1.71 17.18 2.25 0.04 -1.67 14 16 C -0.15 -1.78 10.02 -39.39 -0.39 -2.17 14 17 C -0.04 -0.61 9.54 -39.64 -0.38 -0.99 14 18 C -0.02 -0.46 6.87 -79.52 -0.55 -1.01 14 19 N 0.02 0.52 4.45 34.17 0.15 0.67 14 20 O -0.20 -4.03 18.46 -29.46 -0.54 -4.58 14 21 O -0.08 -1.99 16.00 -32.53 -0.52 -2.51 14 22 H 0.28 6.96 8.29 -40.82 -0.34 6.62 14 23 H 0.16 1.28 8.06 -52.48 -0.42 0.85 14 24 H 0.16 1.82 7.61 -52.49 -0.40 1.42 14 LS Contribution 247.25 15.07 3.73 3.73 Total: -1.00 -31.71 247.25 -4.87 -36.58 By element: Atomic # 1 Polarization: -4.53 SS G_CDS: -0.37 Total: -4.90 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.01 Total: -3.82 kcal Atomic # 7 Polarization: -19.66 SS G_CDS: 0.80 Total: -18.86 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -1.07 Total: -22.95 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.08 Total: -3.87 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.71 -4.87 -36.58 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694944640.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.070 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds