Wall clock time and date at job start Mon Mar 30 2020 04:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99901 * 2 1 4 4 C 1.52999 * 109.46993 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47051 * 65.00188 * 4 3 2 6 6 C 1.46903 * 110.99937 * 189.99960 * 5 4 3 7 7 C 1.50694 * 109.47066 * 66.04365 * 6 5 4 8 8 H 1.08000 * 120.00563 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99902 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99792 * 179.72330 * 9 7 6 11 11 Si 1.86795 * 120.00009 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47088 * 89.99795 * 11 9 7 13 13 H 1.48495 * 109.47293 * 209.99997 * 11 9 7 14 14 H 1.48507 * 109.47015 * 329.99955 * 11 9 7 15 15 C 1.46898 * 111.00301 * 66.04290 * 5 4 3 16 16 H 1.08999 * 110.43855 * 310.70302 * 15 5 4 17 17 C 1.54890 * 110.48499 * 73.24147 * 15 5 4 18 18 C 1.55028 * 102.68454 * 156.51919 * 17 15 5 19 19 C 1.54269 * 104.28042 * 322.23479 * 18 17 15 20 20 H 1.09000 * 110.03350 * 264.23329 * 19 18 17 21 21 C 1.52995 * 110.07522 * 142.82701 * 19 18 17 22 22 N 1.46897 * 109.47391 * 67.80615 * 21 19 18 23 23 C 1.53874 * 106.59959 * 23.51432 * 19 18 17 24 24 H 1.09010 * 109.47141 * 300.00038 * 1 2 3 25 25 H 1.08999 * 109.47354 * 59.99608 * 1 2 3 26 26 H 1.08997 * 109.47415 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47201 * 60.00417 * 3 2 1 28 28 H 1.09001 * 109.47200 * 300.00306 * 3 2 1 29 29 H 1.09000 * 109.47391 * 304.99788 * 4 3 2 30 30 H 1.09009 * 109.47057 * 184.99790 * 4 3 2 31 31 H 1.08998 * 109.46809 * 306.04466 * 6 5 4 32 32 H 1.09002 * 109.47056 * 186.04207 * 6 5 4 33 33 H 0.97000 * 119.99468 * 179.97438 * 10 9 7 34 34 H 1.08999 * 110.75956 * 274.93652 * 17 15 5 35 35 H 1.09000 * 110.75755 * 38.31195 * 17 15 5 36 36 H 1.08998 * 110.52504 * 203.49033 * 18 17 15 37 37 H 1.09000 * 110.48430 * 80.95467 * 18 17 15 38 38 H 1.09004 * 109.47345 * 187.81342 * 21 19 18 39 39 H 1.09006 * 109.46882 * 307.80592 * 21 19 18 40 40 H 1.00905 * 110.99871 * 180.02562 * 22 21 19 41 41 H 1.00899 * 110.99775 * 303.95605 * 22 21 19 42 42 H 1.08994 * 110.03948 * 240.72022 * 23 19 18 43 43 H 1.08997 * 110.07571 * 119.30270 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9768 0.5627 -1.2562 6 6 5.4026 0.2137 -1.1980 7 6 5.6136 -0.8668 -0.1691 8 1 4.7727 -1.2558 0.3859 9 6 6.8803 -1.3597 0.0632 10 7 7.0652 -2.2989 0.9651 11 14 8.3346 -0.6875 -0.8971 12 1 8.9191 0.4661 -0.1672 13 1 9.3615 -1.7495 -1.0481 14 1 7.8794 -0.2448 -2.2395 15 6 3.6948 1.4355 -2.4036 16 1 2.6629 1.7849 -2.3716 17 6 4.6732 2.6362 -2.4247 18 6 4.6609 3.0591 -3.9162 19 6 4.5870 1.7261 -4.6891 20 1 5.5872 1.4107 -4.9861 21 6 3.6992 1.8842 -5.9251 22 7 4.3545 2.7800 -6.8874 23 6 3.9728 0.6938 -3.7274 24 1 -0.3634 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8515 0.5682 0.8409 30 1 3.9785 2.1766 0.0889 31 1 5.9815 1.0954 -0.9230 32 1 5.7289 -0.1453 -2.1741 33 1 7.9562 -2.6459 1.1281 34 1 4.3083 3.4431 -1.7892 35 1 5.6727 2.3254 -2.1207 36 1 5.5751 3.5963 -4.1686 37 1 3.7867 3.6737 -4.1312 38 1 3.5408 0.9091 -6.3858 39 1 2.7387 2.3072 -5.6307 40 1 3.7872 2.9009 -7.7130 41 1 4.5705 3.6699 -6.4638 42 1 4.6749 -0.1225 -3.5576 43 1 3.0419 0.3054 -4.1403 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724030953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:50 Heat of formation + Delta-G solvation = -69.725333 kcal Electronic energy + Delta-G solvation = -20438.286664 eV Core-core repulsion = 17517.192791 eV Total energy + Delta-G solvation = -2921.093873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.59000 -38.66576 -37.13783 -34.80965 -34.01044 -31.26579 -29.92991 -29.64311 -27.53487 -26.61785 -24.39440 -23.84055 -23.05776 -20.66398 -19.87621 -19.04455 -17.36072 -17.33268 -16.91621 -16.73905 -16.27820 -15.79492 -15.74587 -15.45248 -14.99336 -14.72136 -14.39878 -14.33207 -13.85526 -13.69483 -13.41822 -12.95042 -12.89850 -12.67888 -12.30884 -12.23140 -11.97681 -11.92352 -11.82156 -11.74150 -11.51726 -11.43545 -11.28024 -11.06739 -10.74440 -10.42468 -9.56064 -8.80146 -8.25741 -6.27004 1.31599 1.34475 1.45220 2.34486 3.00958 3.07122 3.20675 3.63775 3.69868 3.89267 3.97215 4.18495 4.32002 4.33820 4.47269 4.48796 4.53499 4.59102 4.61076 4.62304 4.69215 4.72425 4.79178 4.88324 4.89385 4.93700 4.98644 5.02526 5.10595 5.14698 5.22234 5.37969 5.45609 5.53344 5.64578 6.07355 6.28284 6.39424 6.55868 6.66280 6.78282 6.81719 7.35680 8.91492 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.008683 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.649413 B = 3223.755317 C = 5002.619421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.074 3.926 4 C 0.061 3.939 5 N -0.528 5.528 6 C 0.177 3.823 7 C -0.510 4.510 8 H 0.034 0.966 9 C 0.007 3.993 10 N -0.950 5.950 11 Si 0.942 3.058 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.251 1.251 15 C 0.078 3.922 16 H 0.094 0.906 17 C -0.164 4.164 18 C -0.102 4.102 19 C -0.087 4.087 20 H 0.058 0.942 21 C 0.077 3.923 22 N -0.860 5.860 23 C -0.113 4.113 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.052 0.948 31 H -0.012 1.012 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.350 0.650 41 H 0.346 0.654 42 H 0.046 0.954 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.848 14.677 -11.429 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C -0.002 4.002 4 C -0.067 4.067 5 N -0.250 5.250 6 C 0.050 3.950 7 C -0.548 4.548 8 H 0.052 0.948 9 C -0.189 4.189 10 N -0.591 5.591 11 Si 0.766 3.234 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.175 1.175 15 C -0.030 4.030 16 H 0.112 0.888 17 C -0.203 4.203 18 C -0.140 4.140 19 C -0.106 4.106 20 H 0.076 0.924 21 C -0.054 4.054 22 N -0.391 5.391 23 C -0.151 4.151 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.006 0.994 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.065 0.935 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.320 13.400 -11.430 20.414 hybrid contribution 0.398 1.020 0.514 1.209 sum -9.923 14.420 -10.916 20.629 Atomic orbital electron populations 1.22870 0.80347 1.03149 1.00629 1.88081 1.20691 1.28623 1.95391 1.22620 0.92398 0.84588 1.00632 1.21992 0.94177 0.97288 0.93267 1.61879 1.18581 1.42180 1.02385 1.19885 0.85892 0.93420 0.95783 1.21343 0.93534 1.19712 1.20252 0.94756 1.25811 1.01807 0.95167 0.96137 1.70066 1.23267 1.30237 1.35555 0.85791 0.78892 0.78438 0.80325 1.19186 1.20763 1.17466 1.22709 0.98980 0.90808 0.90514 0.88814 1.23226 1.00127 0.98848 0.98146 1.22285 1.02366 0.96272 0.93090 1.21713 0.99081 0.95367 0.94481 0.92359 1.21787 0.94579 0.97292 0.91710 1.58674 1.51772 1.18644 1.10000 1.22198 1.00839 0.97849 0.94219 0.93148 0.93040 0.89715 0.91737 0.91906 0.92931 0.93027 0.99423 0.95330 0.92601 0.90700 0.93106 0.91274 0.89942 0.91633 0.94226 0.83674 0.84103 0.93545 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.89 16 2 O -0.41 -14.76 10.65 -148.98 -1.59 -16.34 16 3 C 0.07 2.28 6.02 71.98 0.43 2.72 16 4 C 0.06 2.35 5.11 86.30 0.44 2.80 16 5 N -0.53 -22.12 4.44 -869.23 -3.86 -25.98 16 6 C 0.18 8.70 2.73 85.55 0.23 8.93 16 7 C -0.51 -30.68 8.92 25.60 0.23 -30.45 16 8 H 0.03 2.34 7.42 -2.91 -0.02 2.32 16 9 C 0.01 0.45 5.47 84.66 0.46 0.92 16 10 N -0.95 -61.41 13.96 21.45 0.30 -61.11 16 11 Si 0.94 45.72 27.47 68.60 1.88 47.60 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 14 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 15 C 0.08 2.51 2.77 45.99 0.13 2.64 16 16 H 0.09 2.63 6.06 -2.39 -0.01 2.62 16 17 C -0.16 -4.69 5.50 31.93 0.18 -4.52 16 18 C -0.10 -2.28 5.56 31.72 0.18 -2.10 16 19 C -0.09 -2.20 3.15 -10.07 -0.03 -2.24 16 20 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 21 C 0.08 1.53 5.90 86.30 0.51 2.04 16 22 N -0.86 -14.83 9.62 -186.72 -1.80 -16.63 16 23 C -0.11 -3.51 5.93 31.32 0.19 -3.32 16 24 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.06 1.63 6.18 -2.39 -0.01 1.62 16 29 H 0.05 2.49 6.65 -2.39 -0.02 2.48 16 30 H 0.05 1.79 7.30 -2.38 -0.02 1.77 16 31 H -0.01 -0.56 5.88 -2.39 -0.01 -0.58 16 32 H 0.03 1.44 5.04 -2.39 -0.01 1.43 16 33 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 34 H 0.07 1.88 7.92 -2.39 -0.02 1.86 16 35 H 0.05 1.75 5.70 -2.39 -0.01 1.74 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.46 7.76 -2.39 -0.02 1.44 16 38 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.04 0.69 8.01 -2.38 -0.02 0.67 16 40 H 0.35 4.57 9.08 -89.69 -0.81 3.75 16 41 H 0.35 5.16 8.23 -89.69 -0.74 4.42 16 42 H 0.05 1.78 5.99 -2.39 -0.01 1.77 16 43 H 0.07 2.05 7.67 -2.39 -0.02 2.04 16 Total: -1.00 -72.19 325.16 -1.48 -73.66 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -0.61 Total: 19.49 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 4.19 Total: -20.69 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -5.36 Total: -103.72 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.59 Total: -16.34 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.60 kcal Total: -72.19 -1.48 -73.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724030953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.939 kcal (2) G-P(sol) polarization free energy of solvation -72.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds