Wall clock time and date at job start Mon Mar 30 2020 04:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99783 * 2 1 4 4 C 1.53007 * 109.46722 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46681 * 66.51585 * 4 3 2 6 6 C 1.46898 * 110.99457 * 158.69718 * 5 4 3 7 7 C 1.50707 * 109.46933 * 287.70947 * 6 5 4 8 8 H 1.08000 * 119.99916 * 4.01714 * 7 6 5 9 9 C 1.37878 * 120.00047 * 184.02147 * 7 6 5 10 10 N 1.31514 * 119.99928 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99946 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47363 * 59.99633 * 11 9 7 13 13 H 1.48508 * 109.47068 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47138 * 299.99450 * 11 9 7 15 15 C 1.46894 * 110.99926 * 282.64408 * 5 4 3 16 16 H 1.09005 * 110.01766 * 54.65366 * 15 5 4 17 17 C 1.54269 * 110.03526 * 293.26597 * 15 5 4 18 18 C 1.54888 * 104.19825 * 217.05582 * 17 15 5 19 19 C 1.54896 * 102.74802 * 37.94120 * 18 17 15 20 20 H 1.08995 * 110.48664 * 80.86538 * 19 18 17 21 21 C 1.52996 * 110.48517 * 203.38367 * 19 18 17 22 22 N 1.46903 * 109.46884 * 293.53948 * 21 19 18 23 23 C 1.53875 * 110.07548 * 176.07207 * 15 5 4 24 24 H 1.08997 * 109.47027 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47161 * 299.99746 * 1 2 3 26 26 H 1.09002 * 109.46869 * 59.99669 * 1 2 3 27 27 H 1.08999 * 109.46927 * 60.00775 * 3 2 1 28 28 H 1.09000 * 109.47301 * 300.00159 * 3 2 1 29 29 H 1.08997 * 109.47222 * 306.51150 * 4 3 2 30 30 H 1.08999 * 109.46841 * 186.51545 * 4 3 2 31 31 H 1.08995 * 109.47761 * 47.71289 * 6 5 4 32 32 H 1.09003 * 109.47166 * 167.71814 * 6 5 4 33 33 H 0.97002 * 120.00218 * 180.02562 * 10 9 7 34 34 H 1.09005 * 110.49091 * 98.37673 * 17 15 5 35 35 H 1.09002 * 110.59551 * 335.78878 * 17 15 5 36 36 H 1.09000 * 110.75686 * 279.62951 * 18 17 15 37 37 H 1.09003 * 110.75798 * 156.25066 * 18 17 15 38 38 H 1.09001 * 109.47072 * 173.54653 * 21 19 18 39 39 H 1.08995 * 109.47513 * 53.54613 * 21 19 18 40 40 H 1.00901 * 110.99768 * 56.05301 * 22 21 19 41 41 H 1.00902 * 110.99866 * 179.97438 * 22 21 19 42 42 H 1.09003 * 110.02948 * 0.02718 * 23 15 5 43 43 H 1.08998 * 110.03379 * 238.59603 * 23 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9805 0.5955 -1.2694 6 6 5.3903 0.9140 -1.5320 7 6 5.5156 2.3689 -1.9044 8 1 4.6465 3.0095 -1.8793 9 6 6.7398 2.8822 -2.2772 10 7 7.7982 2.1022 -2.3074 11 14 6.8952 4.6857 -2.7381 12 1 6.4892 5.5282 -1.5846 13 1 8.3047 4.9851 -3.0974 14 1 6.0155 4.9777 -3.8983 15 6 3.7575 -0.8564 -1.2830 16 1 2.7128 -1.0755 -1.0622 17 6 4.6716 -1.5412 -0.2459 18 6 5.0880 -2.8696 -0.9250 19 6 5.2716 -2.4536 -2.4057 20 1 6.2455 -1.9869 -2.5529 21 6 5.1156 -3.6660 -3.3257 22 7 6.2203 -4.6051 -3.0898 23 6 4.1389 -1.4366 -2.6561 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8464 -0.8900 29 1 3.8491 0.5465 0.8268 30 1 3.9783 2.1737 0.1173 31 1 5.9804 0.7158 -0.6373 32 1 5.7556 0.2963 -2.3524 33 1 8.6595 2.4633 -2.5693 34 1 4.1227 -1.7392 0.6748 35 1 5.5480 -0.9260 -0.0418 36 1 4.2999 -3.6164 -0.8284 37 1 6.0251 -3.2391 -0.5086 38 1 5.1333 -3.3381 -4.3651 39 1 4.1671 -4.1609 -3.1171 40 1 6.2648 -4.8742 -2.1183 41 1 6.1397 -5.4153 -3.6857 42 1 4.4902 -0.6408 -3.3131 43 1 3.2794 -1.9371 -3.1018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724030954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:52 Heat of formation + Delta-G solvation = -52.035757 kcal Electronic energy + Delta-G solvation = -20543.793825 eV Core-core repulsion = 17623.467029 eV Total energy + Delta-G solvation = -2920.326795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.04587 -37.43285 -35.50838 -33.12341 -32.28422 -29.38956 -28.53712 -27.62431 -26.21783 -25.02252 -23.15243 -22.24095 -21.31590 -19.43063 -18.27374 -16.55706 -16.19301 -15.72195 -15.57082 -15.45198 -14.71362 -14.52867 -14.20120 -14.10481 -13.40672 -13.02461 -12.90896 -12.58249 -12.19648 -11.98710 -11.73381 -11.45444 -11.04004 -10.91980 -10.86079 -10.66888 -10.51737 -10.30325 -10.21179 -10.10955 -10.10248 -9.95878 -9.56994 -9.12174 -9.05450 -8.55597 -8.34208 -7.03693 -5.94971 -3.96068 3.36369 3.40967 3.43434 4.14270 4.47482 4.69051 4.97536 5.10753 5.28474 5.32346 5.38979 5.40279 5.48795 5.66746 5.72536 5.76218 5.78574 5.86633 5.90150 5.96501 6.12882 6.22787 6.24486 6.35504 6.41661 6.43084 6.51194 6.55191 6.66813 6.91868 6.93801 7.03800 7.28251 7.45864 7.50523 7.52108 7.53927 7.90371 8.25672 8.37397 8.69486 9.11758 9.67429 11.15094 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.008191 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.025466 B = 3417.461867 C = 5202.032593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.068 3.932 4 C 0.061 3.939 5 N -0.526 5.526 6 C 0.189 3.811 7 C -0.507 4.507 8 H 0.059 0.941 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.081 3.919 16 H 0.095 0.905 17 C -0.157 4.157 18 C -0.114 4.114 19 C -0.092 4.092 20 H 0.086 0.914 21 C 0.071 3.929 22 N -0.850 5.850 23 C -0.111 4.111 24 H 0.077 0.923 25 H 0.033 0.967 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.031 0.969 30 H 0.094 0.906 31 H -0.011 1.011 32 H 0.041 0.959 33 H 0.261 0.739 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.338 0.662 41 H 0.334 0.666 42 H 0.082 0.918 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.292 -9.174 3.104 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.009 4.009 4 C -0.067 4.067 5 N -0.250 5.250 6 C 0.064 3.936 7 C -0.546 4.546 8 H 0.078 0.922 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.722 3.278 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.028 4.028 16 H 0.112 0.888 17 C -0.196 4.196 18 C -0.152 4.152 19 C -0.110 4.110 20 H 0.104 0.896 21 C -0.059 4.059 22 N -0.379 5.379 23 C -0.150 4.150 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.112 0.888 31 H 0.007 0.993 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.100 0.900 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.796 -8.505 2.425 13.197 hybrid contribution -0.270 0.214 0.695 0.775 sum -10.065 -8.291 3.119 13.408 Atomic orbital electron populations 1.22652 0.82666 1.01856 0.99430 1.87929 1.18361 1.28883 1.95143 1.22752 0.94925 0.83912 0.99323 1.22035 0.91651 1.01145 0.91911 1.62315 1.24215 1.08330 1.30107 1.19778 0.81505 0.96580 0.95707 1.21171 0.94017 0.94649 1.44755 0.92236 1.24968 0.95890 0.97749 0.95926 1.69950 0.99697 1.35345 1.48607 0.86632 0.76838 0.85402 0.78910 1.20431 1.21445 1.20289 1.22509 0.99336 0.88114 0.92891 0.88768 1.23045 1.00895 0.96843 0.98835 1.22429 0.99797 0.97274 0.95674 1.22045 1.00594 0.94650 0.93756 0.89605 1.21846 0.90801 0.93200 1.00070 1.58708 1.48643 1.19816 1.10781 1.22220 0.96614 0.97967 0.98177 0.90448 0.94841 0.94395 0.94242 0.92624 0.95096 0.88823 0.99344 0.94106 0.92972 0.92845 0.90765 0.92713 0.92365 0.91293 0.96025 0.84918 0.85418 0.89955 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.38 -6.07 7.89 -35.23 -0.28 -6.35 16 3 C 0.07 1.10 6.26 37.16 0.23 1.33 16 4 C 0.06 1.19 5.25 -3.82 -0.02 1.17 16 5 N -0.53 -11.31 4.33 -226.73 -0.98 -12.29 16 6 C 0.19 4.84 3.66 -4.97 -0.02 4.82 16 7 C -0.51 -14.14 8.40 -34.44 -0.29 -14.43 16 8 H 0.06 1.64 7.61 -52.49 -0.40 1.24 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 11 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.08 1.51 2.82 -66.60 -0.19 1.32 16 16 H 0.09 1.74 5.35 -51.93 -0.28 1.47 16 17 C -0.16 -2.81 5.00 -25.07 -0.13 -2.93 16 18 C -0.11 -1.76 5.55 -24.74 -0.14 -1.90 16 19 C -0.09 -1.52 3.00 -88.96 -0.27 -1.79 16 20 H 0.09 1.72 7.97 -51.93 -0.41 1.30 16 21 C 0.07 0.99 6.13 -3.82 -0.02 0.97 16 22 N -0.85 -10.78 9.62 -10.37 -0.10 -10.88 16 23 C -0.11 -2.00 5.34 -25.61 -0.14 -2.14 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.59 6.90 -51.93 -0.36 0.23 16 30 H 0.09 1.94 7.00 -51.93 -0.36 1.57 16 31 H -0.01 -0.31 6.53 -51.93 -0.34 -0.65 16 32 H 0.04 1.12 5.75 -51.93 -0.30 0.82 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 35 H 0.07 1.54 5.83 -51.93 -0.30 1.23 16 36 H 0.05 0.76 8.02 -51.93 -0.42 0.34 16 37 H 0.06 0.87 8.00 -51.93 -0.42 0.46 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.28 8.10 -51.93 -0.42 -0.15 16 40 H 0.34 3.96 8.09 -39.29 -0.32 3.64 16 41 H 0.33 3.42 9.08 -39.29 -0.36 3.06 16 42 H 0.08 1.73 6.54 -51.93 -0.34 1.39 16 43 H 0.05 0.85 7.84 -51.93 -0.41 0.44 16 LS Contribution 327.71 15.07 4.94 4.94 Total: -1.00 -29.90 327.71 -8.18 -38.08 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.52 Total: 6.38 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 0.04 Total: -10.62 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.35 Total: -49.13 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.28 Total: -6.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.90 -8.18 -38.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724030954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.960 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds