Wall clock time and date at job start Mon Mar 30 2020 04:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99947 * 2 1 4 4 C 1.52997 * 109.47515 * 66.04655 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 3 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99711 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00219 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46794 * 90.00022 * 10 8 6 12 12 H 1.48502 * 109.47140 * 210.00005 * 10 8 6 13 13 H 1.48501 * 109.46982 * 330.00118 * 10 8 6 14 14 C 1.46898 * 110.99543 * 236.04312 * 2 1 3 15 15 C 1.53009 * 109.54126 * 183.77914 * 14 2 1 16 16 N 1.46898 * 109.46930 * 59.99596 * 15 14 2 17 17 C 1.53176 * 109.54669 * 63.51227 * 14 2 1 18 18 C 1.53085 * 109.16671 * 183.14691 * 17 14 2 19 19 O 1.42910 * 109.41106 * 57.60888 * 18 17 14 20 20 C 1.42897 * 114.09764 * 298.84039 * 19 18 17 21 21 C 1.53089 * 109.41536 * 61.16099 * 20 19 18 22 22 H 1.08997 * 109.47044 * 59.99771 * 1 2 3 23 23 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47124 * 299.99969 * 1 2 3 25 25 H 1.09002 * 109.47104 * 306.04387 * 3 2 1 26 26 H 1.08998 * 109.46828 * 186.05219 * 3 2 1 27 27 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 28 28 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 29 29 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 31 31 H 0.97000 * 119.99684 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47246 * 180.02562 * 15 14 2 33 33 H 1.09003 * 109.46462 * 299.99990 * 15 14 2 34 34 H 1.00903 * 110.99405 * 179.97438 * 16 15 14 35 35 H 1.00899 * 111.00457 * 303.95859 * 16 15 14 36 36 H 1.09000 * 109.52210 * 303.05836 * 17 14 2 37 37 H 1.09005 * 109.52057 * 63.23946 * 17 14 2 38 38 H 1.09000 * 109.48310 * 297.62844 * 18 17 14 39 39 H 1.09001 * 109.49238 * 177.59424 * 18 17 14 40 40 H 1.09002 * 109.48389 * 301.17513 * 20 19 18 41 41 H 1.09000 * 109.49041 * 181.14666 * 20 19 18 42 42 H 1.09002 * 109.52653 * 182.48410 * 21 20 19 43 43 H 1.08999 * 109.57464 * 62.32860 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1793 3.4860 1.3178 6 6 1.8213 4.1616 2.6166 7 1 1.2590 3.6257 3.3669 8 6 2.2117 5.4637 2.8468 9 7 1.8989 6.0534 3.9799 10 14 3.1850 6.3903 1.5492 11 1 2.2484 7.0945 0.6370 12 1 4.0719 7.3816 2.2096 13 1 4.0084 5.4315 0.7695 14 6 1.9953 -0.7660 -1.1376 15 6 3.5220 -0.8238 -1.0532 16 7 3.9187 -1.4768 0.2014 17 6 1.5779 -0.0905 -2.4474 18 6 2.0632 -0.9375 -3.6266 19 8 1.5223 -2.2559 -3.5190 20 6 1.9175 -2.9538 -2.3363 21 6 1.4263 -2.1878 -1.1052 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.5611 1.9273 -0.8309 26 1 3.0797 1.3443 -0.1084 27 1 2.0658 1.5016 2.1492 28 1 0.5472 2.0845 1.4264 29 1 3.2636 3.4594 1.2094 30 1 1.7446 4.0416 0.4870 31 1 2.1739 6.9694 4.1420 32 1 3.9114 -1.3920 -1.8980 33 1 3.9258 0.1883 -1.0795 34 1 4.9233 -1.5276 0.2807 35 1 3.5162 -1.0054 0.9975 36 1 0.4919 -0.0048 -2.4830 37 1 2.0246 0.9022 -2.5037 38 1 3.1519 -0.9891 -3.6134 39 1 1.7321 -0.4839 -4.5609 40 1 3.0043 -3.0319 -2.3062 41 1 1.4813 -3.9528 -2.3407 42 1 1.7645 -2.6951 -0.2016 43 1 0.3372 -2.1445 -1.1126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725050304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:57 Heat of formation + Delta-G solvation = -68.353008 kcal Electronic energy + Delta-G solvation = -20505.177334 eV Core-core repulsion = 17584.142969 eV Total energy + Delta-G solvation = -2921.034364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.51066 -38.48566 -36.10098 -34.88666 -33.66983 -32.18508 -31.99574 -29.07472 -27.65788 -25.46641 -24.84200 -24.32608 -23.02348 -21.64055 -19.23956 -18.82175 -17.85805 -17.03598 -16.96832 -16.45574 -16.35014 -15.96599 -15.75511 -15.45182 -15.03779 -14.81322 -14.67695 -14.15001 -13.99639 -13.62297 -13.53455 -13.20505 -13.10681 -12.75928 -12.53927 -12.49437 -12.09322 -11.90663 -11.83151 -11.80187 -11.56972 -11.36864 -11.25043 -10.99406 -10.77768 -10.46922 -9.48573 -9.16006 -8.30727 -6.34971 1.33608 1.35494 1.47350 2.34363 2.84817 2.99688 3.04529 3.55145 3.71294 3.92286 4.04853 4.06990 4.10525 4.23314 4.27116 4.37294 4.40996 4.56392 4.57215 4.61915 4.68286 4.75721 4.78299 4.83084 4.85276 4.94844 4.96074 4.99664 5.10655 5.16339 5.27714 5.32482 5.52735 5.58025 5.65122 6.10431 6.17222 6.27865 6.29457 6.33564 6.68097 6.73448 7.29654 8.86392 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.033598 B = 0.004578 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.179102 B = 6114.447912 C = 6225.065519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.528 5.528 3 C 0.061 3.939 4 C -0.086 4.086 5 C -0.008 4.008 6 C -0.532 4.532 7 H 0.029 0.971 8 C 0.003 3.997 9 N -0.953 5.953 10 Si 0.953 3.047 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.246 1.246 14 C 0.113 3.887 15 C 0.071 3.929 16 N -0.842 5.842 17 C -0.184 4.184 18 C 0.066 3.934 19 O -0.401 6.401 20 C 0.063 3.937 21 C -0.129 4.129 22 H 0.027 0.973 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.019 0.981 30 H 0.014 0.986 31 H 0.266 0.734 32 H 0.083 0.917 33 H 0.022 0.978 34 H 0.344 0.656 35 H 0.348 0.652 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -17.123 -16.447 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.251 5.251 3 C -0.066 4.066 4 C -0.124 4.124 5 C -0.046 4.046 6 C -0.570 4.570 7 H 0.047 0.953 8 C -0.194 4.194 9 N -0.593 5.593 10 Si 0.776 3.224 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.169 1.169 14 C 0.023 3.977 15 C -0.060 4.060 16 N -0.372 5.372 17 C -0.224 4.224 18 C -0.011 4.011 19 O -0.320 6.320 20 C -0.014 4.014 21 C -0.167 4.167 22 H 0.045 0.955 23 H 0.100 0.900 24 H 0.079 0.921 25 H 0.049 0.951 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.040 0.960 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.520 -17.926 -16.326 24.377 hybrid contribution 0.398 2.453 -0.036 2.485 sum 2.918 -15.474 -16.363 22.709 Atomic orbital electron populations 1.22491 0.87510 1.02419 1.00487 1.62154 1.08122 1.12950 1.41851 1.22139 0.99876 0.88098 0.96514 1.21274 0.99750 0.94820 0.96588 1.19475 0.96248 0.94151 0.94732 1.21493 1.34883 0.98216 1.02396 0.95270 1.26050 0.96916 0.98648 0.97763 1.70077 1.48727 1.13912 1.26623 0.85627 0.79185 0.78507 0.79113 1.19223 1.20910 1.16937 1.21173 0.94757 0.94041 0.87681 1.21910 0.93352 0.96699 0.94051 1.58672 1.15147 1.59049 1.04376 1.22851 1.02286 1.00385 0.96853 1.22602 0.98061 0.82368 0.98116 1.87898 1.73641 1.27950 1.42483 1.22692 0.99728 0.95704 0.83237 1.22122 1.00283 0.94256 0.99996 0.95492 0.90009 0.92136 0.95068 0.90822 0.93143 0.93657 0.96272 0.96725 0.92500 0.89896 0.95967 0.84372 0.83880 0.91363 0.90959 0.92071 0.87999 0.92200 0.87745 0.89351 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 8.54 127.69 1.09 1.57 16 2 N -0.53 -13.61 3.84 -871.94 -3.35 -16.96 16 3 C 0.06 1.85 4.08 86.30 0.35 2.20 16 4 C -0.09 -3.36 5.08 30.59 0.16 -3.20 16 5 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 6 C -0.53 -31.10 9.66 25.60 0.25 -30.86 16 7 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 8 C 0.00 0.16 5.47 84.66 0.46 0.62 16 9 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 10 Si 0.95 44.34 27.47 68.60 1.88 46.23 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 14 C 0.11 2.42 0.22 3.65 0.00 2.42 16 15 C 0.07 1.42 4.85 86.31 0.42 1.84 16 16 N -0.84 -16.83 8.82 -186.70 -1.65 -18.48 16 17 C -0.18 -3.75 4.21 30.68 0.13 -3.63 16 18 C 0.07 1.16 6.57 72.01 0.47 1.63 16 19 O -0.40 -8.26 10.77 -148.98 -1.60 -9.87 16 20 C 0.06 1.11 6.57 72.01 0.47 1.58 16 21 C -0.13 -2.55 4.55 30.68 0.14 -2.41 16 22 H 0.03 0.66 6.53 -2.39 -0.02 0.65 16 23 H 0.08 1.82 5.95 -2.39 -0.01 1.80 16 24 H 0.06 1.71 6.47 -2.39 -0.02 1.69 16 25 H 0.03 0.94 6.95 -2.39 -0.02 0.92 16 26 H 0.07 2.15 5.83 -2.39 -0.01 2.14 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.82 6.55 -2.39 -0.02 1.80 16 29 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 30 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 31 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 32 H 0.08 1.46 5.02 -2.39 -0.01 1.44 16 33 H 0.02 0.49 6.20 -2.39 -0.01 0.47 16 34 H 0.34 5.75 9.08 -89.69 -0.81 4.94 16 35 H 0.35 8.18 8.30 -89.69 -0.74 7.44 16 36 H 0.07 1.51 6.44 -2.39 -0.02 1.50 16 37 H 0.07 1.52 6.84 -2.38 -0.02 1.51 16 38 H 0.06 0.95 6.61 -2.39 -0.02 0.93 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 0.99 6.60 -2.39 -0.02 0.98 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.88 7.53 -2.39 -0.02 1.86 16 43 H 0.06 1.31 6.10 -2.39 -0.01 1.30 16 Total: -1.00 -65.35 311.94 -0.95 -66.30 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.60 Total: 21.42 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 4.06 Total: -28.49 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -4.70 Total: -95.59 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -1.60 Total: -9.87 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.23 kcal Total: -65.35 -0.95 -66.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725050304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.054 kcal (2) G-P(sol) polarization free energy of solvation -65.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds