Wall clock time and date at job start Mon Mar 30 2020 04:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 11 11 O 1.42896 * 109.46822 * 300.00051 * 9 7 2 12 12 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 13 13 C 1.38703 * 120.40469 * 264.71534 * 12 9 7 14 14 C 1.38580 * 118.43075 * 179.78444 * 13 12 9 15 15 C 1.38358 * 119.14934 * 0.51952 * 14 13 12 16 16 Br 1.89096 * 119.62951 * 179.70392 * 15 14 13 17 17 N 1.31926 * 120.73833 * 359.72335 * 15 14 13 18 18 C 1.31899 * 121.71689 * 0.02562 * 17 15 14 19 19 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 20 20 H 0.96704 * 114.00255 * 299.99374 * 11 9 7 21 21 H 1.07998 * 120.78435 * 0.02562 * 13 12 9 22 22 H 1.08002 * 120.42571 * 180.24649 * 14 13 12 23 23 H 1.07995 * 119.61441 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8746 -0.6807 0.8905 11 8 3.9883 -0.5196 -1.1661 12 6 4.0139 -2.6149 -0.0001 13 6 4.3513 -3.2402 1.1911 14 6 4.8045 -4.5490 1.1439 15 6 4.9149 -5.1801 -0.0824 16 35 5.5398 -6.9630 -0.1633 17 7 4.5894 -4.5518 -1.1958 18 6 4.1501 -3.3082 -1.1873 19 1 -0.4850 0.8400 -0.0004 20 1 3.7034 -0.9226 -1.9977 21 1 4.2593 -2.7208 2.1335 22 1 5.0724 -5.0682 2.0523 23 1 3.8937 -2.8264 -2.1191 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536015810.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:52 Heat of formation + Delta-G solvation = -34.754377 kcal Electronic energy + Delta-G solvation = -11639.392156 eV Core-core repulsion = 9305.045176 eV Total energy + Delta-G solvation = -2334.346980 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.29536 -38.00239 -34.48725 -33.84943 -33.23780 -31.12889 -28.91853 -25.23667 -24.53815 -22.42804 -19.55122 -18.19372 -17.61353 -16.84731 -16.80703 -15.55987 -15.30273 -14.94964 -14.80884 -14.10385 -13.91835 -13.32881 -13.06414 -12.68720 -12.18371 -11.90001 -11.49619 -11.34235 -10.94356 -10.80451 -10.61560 -10.31424 -9.71199 -8.36686 -6.54637 -0.08000 0.20619 0.31955 1.42884 1.49714 1.77199 2.42781 2.63835 3.00136 3.45428 3.83269 3.94338 4.02014 4.10949 4.21736 4.59700 4.91097 4.97977 5.35299 5.45042 5.54062 6.04371 6.57737 6.67627 7.07022 7.26483 8.76796 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.067220 B = 0.005410 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.444968 B = 5174.645062 C = 5246.786721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.033 3.967 3 Si 0.938 3.062 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.033 0.967 9 C 0.239 3.761 10 H 0.078 0.922 11 O -0.576 6.576 12 C -0.118 4.118 13 C -0.074 4.074 14 C -0.129 4.129 15 C 0.087 3.913 16 Br -0.003 7.003 17 N -0.480 5.480 18 C 0.100 3.900 19 H 0.269 0.731 20 H 0.371 0.629 21 H 0.163 0.837 22 H 0.174 0.826 23 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.874 -10.590 1.832 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.168 4.168 3 Si 0.762 3.238 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.124 1.124 7 C -0.596 4.596 8 H 0.051 0.949 9 C 0.180 3.820 10 H 0.096 0.904 11 O -0.384 6.384 12 C -0.121 4.121 13 C -0.100 4.100 14 C -0.150 4.150 15 C -0.129 4.129 16 Br 0.081 6.919 17 N -0.190 5.190 18 C -0.058 4.058 19 H 0.078 0.922 20 H 0.220 0.780 21 H 0.180 0.820 22 H 0.191 0.809 23 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 13.329 -11.244 1.431 17.497 hybrid contribution -0.987 1.092 0.355 1.514 sum 12.342 -10.152 1.785 16.080 Atomic orbital electron populations 1.70068 1.08621 1.28668 1.49918 1.25864 0.95251 1.03607 0.92084 0.85993 0.81945 0.77147 0.78737 1.20624 1.22523 1.12417 1.21510 0.90974 0.93238 1.53861 0.94910 1.18592 0.91226 0.85063 0.87075 0.90450 1.86676 1.77521 1.57323 1.16863 1.21952 0.95453 0.99712 0.94990 1.21807 0.94672 0.94356 0.99191 1.22210 0.99527 0.95105 0.98199 1.23015 1.03519 0.94593 0.91800 1.96686 1.86457 1.09696 1.99109 1.67384 1.11034 1.10015 1.30588 1.22621 0.95306 0.88916 0.98942 0.92216 0.77951 0.81970 0.80894 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.66 13.96 21.45 0.30 -55.36 14 2 C 0.03 1.78 5.47 84.65 0.46 2.24 14 3 Si 0.94 41.94 26.99 68.60 1.85 43.80 14 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 14 5 H -0.30 -13.54 7.11 99.48 0.71 -12.84 14 6 H -0.20 -8.51 5.30 99.48 0.53 -7.98 14 7 C -0.56 -29.29 9.33 25.60 0.24 -29.05 14 8 H 0.03 1.95 7.98 -2.92 -0.02 1.93 14 9 C 0.24 10.02 2.57 29.11 0.07 10.09 14 10 H 0.08 3.16 7.49 -2.39 -0.02 3.15 14 11 O -0.58 -22.88 9.94 -148.98 -1.48 -24.36 14 12 C -0.12 -4.36 4.96 -19.77 -0.10 -4.46 14 13 C -0.07 -2.30 9.84 22.46 0.22 -2.08 14 14 C -0.13 -3.55 9.84 22.38 0.22 -3.33 14 15 C 0.09 2.69 7.16 84.71 0.61 3.30 14 16 Br 0.00 -0.08 33.87 -20.37 -0.69 -0.77 14 17 N -0.48 -16.86 10.32 -190.76 -1.97 -18.83 14 18 C 0.10 3.58 10.49 84.66 0.89 4.47 14 19 H 0.27 15.06 8.31 -92.71 -0.77 14.28 14 20 H 0.37 12.82 7.41 -74.05 -0.55 12.27 14 21 H 0.16 4.29 8.06 -2.91 -0.02 4.27 14 22 H 0.17 3.48 8.06 -2.91 -0.02 3.45 14 23 H 0.17 5.45 6.63 -2.91 -0.02 5.43 14 Total: -1.00 -63.05 228.20 1.14 -61.91 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.51 Total: 12.44 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 2.62 Total: -18.82 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -1.67 Total: -74.19 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -1.48 Total: -24.36 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.85 Total: 43.80 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -0.69 Total: -0.77 kcal Total: -63.05 1.14 -61.91 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536015810.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.151 kcal (2) G-P(sol) polarization free energy of solvation -63.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds