Wall clock time and date at job start Mon Mar 30 2020 04:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00271 * 2 1 4 4 H 1.48503 * 109.46816 * 270.00487 * 3 2 1 5 5 H 1.48496 * 109.46888 * 30.00166 * 3 2 1 6 6 H 1.48502 * 109.47194 * 150.00216 * 3 2 1 7 7 C 1.37879 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00102 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99854 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47140 * 299.99970 * 9 7 2 11 11 O 1.42899 * 109.47010 * 60.00111 * 9 7 2 12 12 C 1.50697 * 109.47115 * 179.97438 * 9 7 2 13 13 C 1.38628 * 120.42784 * 265.25164 * 12 9 7 14 14 C 1.38657 * 118.43221 * 180.26346 * 13 12 9 15 15 C 1.38197 * 119.18778 * 359.73284 * 14 13 12 16 16 N 1.31866 * 120.77208 * 0.02562 * 15 14 13 17 17 C 1.31959 * 121.71775 * 359.97438 * 16 15 14 18 18 Br 1.89100 * 119.63099 * 180.02562 * 17 16 15 19 19 H 0.96995 * 120.00022 * 359.97438 * 1 2 3 20 20 H 0.96700 * 114.00511 * 59.99295 * 11 9 7 21 21 H 1.08001 * 120.78137 * 359.97438 * 13 12 9 22 22 H 1.08007 * 120.40380 * 179.70861 * 14 13 12 23 23 H 1.08000 * 119.61138 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 8 0.4299 -2.5751 -1.1666 12 6 2.2302 -3.6446 0.0005 13 6 2.6113 -4.2426 -1.1907 14 6 3.5105 -5.2969 -1.1421 15 6 3.9984 -5.7106 0.0829 16 7 3.6180 -5.1156 1.1965 17 6 2.7642 -4.1095 1.1887 18 35 2.2597 -3.2988 2.8210 19 1 -0.4850 0.8400 0.0004 20 1 0.9223 -2.5299 -1.9976 21 1 2.2134 -3.8984 -2.1339 22 1 3.8255 -5.7890 -2.0505 23 1 4.6995 -6.5309 0.1286 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536019197.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:23 Heat of formation + Delta-G solvation = -36.776771 kcal Electronic energy + Delta-G solvation = -11862.456836 eV Core-core repulsion = 9528.022158 eV Total energy + Delta-G solvation = -2334.434677 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.17759 -37.76618 -34.32800 -33.53721 -33.23762 -30.74044 -28.68698 -25.53015 -24.03100 -22.55123 -19.16399 -18.10766 -17.56281 -16.79097 -16.61981 -15.45561 -15.28195 -14.67015 -14.60550 -14.09209 -13.47082 -13.09855 -12.81836 -12.78395 -12.13299 -11.89372 -11.55573 -11.10907 -10.90950 -10.64668 -10.48639 -10.24052 -9.64694 -8.12575 -6.37117 0.00446 0.31986 0.56670 1.39872 1.42509 1.52092 2.39219 2.76448 3.12931 3.60997 3.94488 4.02132 4.12079 4.37473 4.41306 4.70498 5.05694 5.18196 5.60137 5.66578 5.71797 6.00310 6.68694 6.78233 7.30965 7.46890 8.91237 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.011236 C = 0.008986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.234853 B = 2491.349684 C = 3115.266255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.038 3.962 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.557 4.557 8 H 0.048 0.952 9 C 0.261 3.739 10 H 0.053 0.947 11 O -0.571 6.571 12 C -0.116 4.116 13 C -0.083 4.083 14 C -0.139 4.139 15 C 0.081 3.919 16 N -0.485 5.485 17 C 0.095 3.905 18 Br -0.022 7.022 19 H 0.263 0.737 20 H 0.359 0.641 21 H 0.156 0.844 22 H 0.185 0.815 23 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.082 -9.161 -0.831 11.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.165 4.165 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.595 4.595 8 H 0.067 0.933 9 C 0.202 3.798 10 H 0.071 0.929 11 O -0.376 6.376 12 C -0.121 4.121 13 C -0.109 4.109 14 C -0.159 4.159 15 C -0.079 4.079 16 N -0.196 5.196 17 C -0.119 4.119 18 Br 0.063 6.937 19 H 0.072 0.928 20 H 0.205 0.795 21 H 0.173 0.827 22 H 0.202 0.798 23 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 6.577 -9.081 1.059 11.263 hybrid contribution 0.399 1.220 -1.189 1.750 sum 6.976 -7.861 -0.130 10.511 Atomic orbital electron populations 1.70170 1.07309 1.27433 1.48021 1.25685 0.95346 1.02119 0.93350 0.85705 0.78771 0.79507 0.78565 1.19496 1.20802 1.19543 1.21483 0.92572 0.91110 1.54326 0.93325 1.18367 0.86860 0.88425 0.86104 0.92905 1.86594 1.38736 1.96244 1.16051 1.22020 0.98629 0.97937 0.93520 1.21736 0.96200 0.95179 0.97809 1.22636 0.95964 0.96223 1.01043 1.23424 0.98540 0.99038 0.86867 1.67369 1.11184 1.07316 1.33708 1.22485 1.00067 0.97425 0.91944 1.96636 1.90264 1.79895 1.26954 0.92794 0.79493 0.82667 0.79783 0.78328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.60 12.84 21.45 0.28 -51.32 14 2 C 0.04 2.08 5.40 84.66 0.46 2.54 14 3 Si 0.95 42.75 29.54 68.60 2.03 44.78 14 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 14 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 14 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 14 7 C -0.56 -29.66 8.71 25.60 0.22 -29.44 14 8 H 0.05 2.61 7.74 -2.91 -0.02 2.59 14 9 C 0.26 13.04 2.52 29.10 0.07 13.11 14 10 H 0.05 2.97 6.90 -2.39 -0.02 2.96 14 11 O -0.57 -28.24 12.40 -148.98 -1.85 -30.09 14 12 C -0.12 -4.88 5.02 -19.75 -0.10 -4.98 14 13 C -0.08 -2.69 9.41 22.46 0.21 -2.48 14 14 C -0.14 -3.39 10.11 22.36 0.23 -3.16 14 15 C 0.08 2.15 11.18 84.68 0.95 3.09 14 16 N -0.49 -17.44 10.32 -190.76 -1.97 -19.40 14 17 C 0.10 3.93 7.16 84.69 0.61 4.54 14 18 Br -0.02 -0.89 32.04 -20.37 -0.65 -1.55 14 19 H 0.26 14.43 8.31 -92.71 -0.77 13.66 14 20 H 0.36 14.92 7.38 -74.06 -0.55 14.38 14 21 H 0.16 4.39 6.53 -2.91 -0.02 4.37 14 22 H 0.18 2.62 8.06 -2.91 -0.02 2.60 14 23 H 0.20 3.38 8.06 -2.91 -0.02 3.35 14 Total: -1.00 -65.79 230.95 1.18 -64.61 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.70 Total: 9.76 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 2.65 Total: -16.78 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -1.69 Total: -70.73 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -1.85 Total: -30.09 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -0.65 Total: -1.55 kcal Total: -65.79 1.18 -64.61 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536019197.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.835 kcal (2) G-P(sol) polarization free energy of solvation -65.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds