Wall clock time and date at job start Mon Mar 30 2020 04:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 119.99948 * 2 1 4 4 H 1.48502 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47309 * 299.99762 * 3 2 1 6 6 H 1.48500 * 109.47441 * 60.00166 * 3 2 1 7 7 C 1.37878 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99817 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00015 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47710 * 59.99951 * 9 7 2 11 11 O 1.42899 * 109.46762 * 299.99273 * 9 7 2 12 12 C 1.50706 * 109.46802 * 179.97438 * 9 7 2 13 13 N 1.31872 * 119.62231 * 75.02111 * 12 9 7 14 14 C 1.31863 * 121.73217 * 179.67848 * 13 12 9 15 15 C 1.38225 * 120.78564 * 0.58997 * 14 13 12 16 16 C 1.38612 * 119.17136 * 359.42217 * 15 14 13 17 17 C 1.38279 * 119.62459 * 254.99464 * 12 9 7 18 18 Br 1.89098 * 120.42776 * 0.04795 * 17 12 9 19 19 H 0.97006 * 120.00458 * 359.97438 * 1 2 3 20 20 H 0.96696 * 114.00235 * 300.00300 * 11 9 7 21 21 H 1.08000 * 119.60682 * 180.31004 * 14 13 12 22 22 H 1.08002 * 120.41748 * 179.70481 * 15 14 13 23 23 H 1.07998 * 120.79540 * 180.25705 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5572 -0.8896 11 8 0.4291 -2.5746 1.1671 12 6 2.2303 -3.6446 0.0005 13 7 2.8791 -3.9475 1.1080 14 6 3.7403 -4.9448 1.1565 15 6 4.0041 -5.7070 0.0340 16 6 3.3416 -5.4193 -1.1491 17 6 2.4379 -4.3664 -1.1605 18 35 1.5030 -3.9237 -2.7435 19 1 -0.4851 0.8401 0.0004 20 1 0.9209 -2.5290 1.9984 21 1 4.2490 -5.1660 2.0832 22 1 4.7142 -6.5195 0.0792 23 1 3.5245 -6.0005 -2.0407 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536057593.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:33 Heat of formation + Delta-G solvation = -36.194841 kcal Electronic energy + Delta-G solvation = -11836.960130 eV Core-core repulsion = 9502.550687 eV Total energy + Delta-G solvation = -2334.409443 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.17808 -37.47060 -34.30729 -34.01647 -32.97082 -30.62480 -28.77312 -25.65166 -24.02826 -22.59910 -19.14364 -18.01878 -17.57006 -16.69579 -16.48458 -15.68481 -15.17257 -14.70132 -14.64466 -14.05139 -13.44309 -13.02915 -12.88893 -12.81162 -12.25254 -12.11533 -11.71331 -11.08619 -10.74909 -10.66158 -10.46668 -10.06795 -9.67489 -8.14121 -6.38859 0.00711 0.29267 0.65852 1.38918 1.39864 1.52067 2.38045 2.79739 3.11634 3.52196 3.84852 3.91857 4.10111 4.36746 4.47774 4.74564 4.95879 5.04564 5.49991 5.63868 5.72968 5.99589 6.65254 7.06751 7.29343 7.44097 8.90438 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.023905 B = 0.010641 C = 0.008629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.020684 B = 2630.777773 C = 3244.245384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.033 3.967 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.561 4.561 8 H 0.044 0.956 9 C 0.258 3.742 10 H 0.070 0.930 11 O -0.572 6.572 12 C 0.135 3.865 13 N -0.501 5.501 14 C 0.101 3.899 15 C -0.170 4.170 16 C -0.049 4.049 17 C -0.167 4.167 18 Br -0.040 7.040 19 H 0.264 0.736 20 H 0.358 0.642 21 H 0.193 0.807 22 H 0.188 0.812 23 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.957 -11.765 -3.799 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.170 4.170 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.600 4.600 8 H 0.063 0.937 9 C 0.200 3.800 10 H 0.088 0.912 11 O -0.376 6.376 12 C -0.004 4.004 13 N -0.212 5.212 14 C -0.057 4.057 15 C -0.190 4.190 16 C -0.076 4.076 17 C -0.249 4.249 18 Br 0.045 6.955 19 H 0.073 0.927 20 H 0.204 0.796 21 H 0.209 0.791 22 H 0.205 0.795 23 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.796 -11.045 -4.103 13.602 hybrid contribution 0.938 0.520 -0.035 1.073 sum 7.734 -10.525 -4.138 13.701 Atomic orbital electron populations 1.70190 1.07353 1.27499 1.47984 1.25778 0.95531 1.02435 0.93289 0.85518 0.78839 0.79252 0.78036 1.19412 1.19944 1.20133 1.21537 0.92506 0.91500 1.54415 0.93731 1.18680 0.86683 0.88049 0.86594 0.91210 1.86482 1.38567 1.96277 1.16261 1.22553 0.94691 0.94916 0.88211 1.67553 1.08290 1.17535 1.27807 1.23667 0.92409 0.89166 1.00482 1.22552 1.01831 1.02646 0.91985 1.21935 0.91647 0.93221 1.00803 1.22933 1.05005 1.02984 0.93960 1.96587 1.75574 1.94275 1.29090 0.92678 0.79608 0.79059 0.79490 0.81172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.77 12.84 21.45 0.28 -53.50 14 2 C 0.03 1.86 5.40 84.66 0.46 2.32 14 3 Si 0.96 44.52 29.54 68.60 2.03 46.55 14 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 14 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 14 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 14 7 C -0.56 -32.14 8.75 25.60 0.22 -31.92 14 8 H 0.04 2.58 7.74 -2.91 -0.02 2.56 14 9 C 0.26 13.94 2.93 29.10 0.09 14.02 14 10 H 0.07 4.00 6.05 -2.39 -0.01 3.99 14 11 O -0.57 -32.15 12.69 -148.98 -1.89 -34.04 14 12 C 0.13 6.07 5.69 42.56 0.24 6.32 14 13 N -0.50 -20.44 9.78 -183.81 -1.80 -22.24 14 14 C 0.10 2.89 11.18 84.69 0.95 3.83 14 15 C -0.17 -3.91 10.11 22.36 0.23 -3.68 14 16 C -0.05 -1.34 9.94 22.48 0.22 -1.12 14 17 C -0.17 -6.35 6.24 22.40 0.14 -6.21 14 18 Br -0.04 -1.47 31.60 -20.37 -0.64 -2.12 14 19 H 0.26 14.91 8.31 -92.70 -0.77 14.14 14 20 H 0.36 18.71 8.64 -74.06 -0.64 18.07 14 21 H 0.19 3.82 8.06 -2.91 -0.02 3.80 14 22 H 0.19 2.34 8.06 -2.91 -0.02 2.32 14 23 H 0.17 3.43 8.06 -2.91 -0.02 3.40 14 Total: -1.00 -69.52 232.92 1.12 -68.40 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.60 Total: 13.39 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 2.55 Total: -16.44 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -1.52 Total: -75.73 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.89 Total: -34.04 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 35 Polarization: -1.47 SS G_CDS: -0.64 Total: -2.12 kcal Total: -69.52 1.12 -68.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536057593.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.202 kcal (2) G-P(sol) polarization free energy of solvation -69.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds