Wall clock time and date at job start Mon Mar 30 2020 05:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86796 * 119.99839 * 2 1 4 4 H 1.48503 * 109.47392 * 274.98111 * 3 2 1 5 5 H 1.48511 * 109.47271 * 34.98010 * 3 2 1 6 6 H 1.48500 * 109.47348 * 154.97860 * 3 2 1 7 7 C 1.39885 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00049 * 146.35773 * 7 2 1 9 9 C 1.41203 * 119.99781 * 326.36358 * 7 2 1 10 10 C 1.40838 * 120.17648 * 156.72989 * 9 7 2 11 11 C 1.36422 * 119.81483 * 180.02562 * 10 9 7 12 12 C 1.39335 * 120.17962 * 0.02562 * 11 10 9 13 13 O 1.35668 * 119.81647 * 179.97438 * 12 11 10 14 14 C 1.35547 * 118.00028 * 75.62755 * 13 12 11 15 15 N 1.32292 * 119.10664 * 175.55585 * 14 13 12 16 16 C 1.32271 * 120.83604 * 180.02562 * 15 14 13 17 17 C 1.39219 * 119.08221 * 359.97438 * 16 15 14 18 18 N 1.39979 * 120.80956 * 180.02562 * 17 16 15 19 19 C 1.39213 * 118.37617 * 359.97438 * 17 16 15 20 20 N 1.32272 * 119.11015 * 355.53616 * 14 13 12 21 21 C 1.39333 * 120.36442 * 0.25694 * 12 11 10 22 22 C 1.36421 * 120.18203 * 359.44339 * 21 12 11 23 23 H 0.97000 * 120.00201 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.09437 * 359.97438 * 10 9 7 25 25 H 1.07999 * 119.91130 * 179.97438 * 11 10 9 26 26 H 1.07992 * 120.46007 * 179.97438 * 16 15 14 27 27 H 0.96994 * 119.99171 * 179.97438 * 18 17 16 28 28 H 0.96998 * 119.99834 * 359.97438 * 18 17 16 29 29 H 1.08001 * 120.45588 * 180.02562 * 19 17 16 30 30 H 1.08000 * 119.91249 * 179.69983 * 21 12 11 31 31 H 1.08000 * 120.09947 * 180.29567 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3850 2.1073 -1.3948 5 1 1.4968 2.6201 0.8027 6 1 3.5890 1.4122 0.5922 7 6 2.0083 -1.2114 0.0005 8 1 2.9526 -1.2899 -0.5176 9 6 1.4797 -2.3316 0.6784 10 6 1.8714 -3.6328 0.3084 11 6 1.3556 -4.7098 0.9680 12 6 0.4432 -4.5251 2.0048 13 8 -0.0655 -5.6015 2.6554 14 6 0.7300 -6.2400 3.5480 15 7 0.2286 -7.2364 4.2593 16 6 0.9740 -7.8828 5.1402 17 6 2.3018 -7.5016 5.3124 18 7 3.1233 -8.1611 6.2342 19 6 2.7930 -6.4494 4.5446 20 7 1.9867 -5.8503 3.6840 21 6 0.0460 -3.2414 2.3731 22 6 0.5570 -2.1537 1.7276 23 1 -0.4850 0.8400 0.0004 24 1 2.5776 -3.7776 -0.4958 25 1 1.6546 -5.7083 0.6853 26 1 0.5583 -8.6950 5.7179 27 1 4.0469 -7.8859 6.3443 28 1 2.7689 -8.8931 6.7628 29 1 3.8181 -6.1262 4.6506 30 1 -0.6653 -3.1070 3.1746 31 1 0.2518 -1.1590 2.0174 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040455925.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:24 Heat of formation + Delta-G solvation = 46.792382 kcal Electronic energy + Delta-G solvation = -17712.881057 eV Core-core repulsion = 14767.056591 eV Total energy + Delta-G solvation = -2945.824466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80914 -38.67466 -36.66013 -34.82736 -33.55837 -33.37553 -29.78384 -29.41342 -28.43233 -25.29731 -24.39980 -23.03914 -21.22728 -20.81389 -18.30823 -18.15964 -17.43224 -16.75789 -15.76884 -15.52526 -15.22230 -15.03087 -14.15874 -13.95321 -13.78057 -13.26109 -12.75602 -12.33554 -12.10172 -12.02037 -11.38448 -11.24217 -11.17595 -10.86270 -10.67116 -10.60941 -10.38665 -10.00165 -9.33571 -9.04970 -8.78481 -7.63317 -7.53163 -7.34397 -7.03137 -4.40865 1.33279 1.50898 2.44178 2.94557 3.01250 3.04828 3.09843 3.57452 3.81423 3.82467 4.18714 4.44192 4.56217 4.67683 5.04403 5.22109 5.61163 5.87074 6.19738 6.20577 6.25297 6.82297 6.90788 7.01391 7.07683 7.10790 7.29630 7.49609 7.55184 7.58031 7.86550 7.94460 8.08689 8.22133 8.44641 8.70535 8.72844 8.99202 9.91192 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.039451 B = 0.004504 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.563876 B = 6215.850320 C = 6496.265466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.089 3.911 3 Si 0.897 3.103 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.460 4.460 8 H 0.086 0.914 9 C 0.124 3.876 10 C -0.225 4.225 11 C -0.058 4.058 12 C -0.073 4.073 13 O -0.220 6.220 14 C 0.444 3.556 15 N -0.497 5.497 16 C 0.108 3.892 17 C 0.055 3.945 18 N -0.871 5.871 19 C 0.114 3.886 20 N -0.503 5.503 21 C -0.074 4.074 22 C -0.177 4.177 23 H 0.287 0.713 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.164 0.836 27 H 0.399 0.601 28 H 0.398 0.602 29 H 0.161 0.839 30 H 0.093 0.907 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.353 -8.841 9.456 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.486 4.486 8 H 0.104 0.896 9 C 0.121 3.879 10 C -0.244 4.244 11 C -0.077 4.077 12 C -0.116 4.116 13 O -0.119 6.119 14 C 0.143 3.857 15 N -0.222 5.222 16 C -0.064 4.064 17 C -0.052 4.052 18 N -0.415 5.415 19 C -0.058 4.058 20 N -0.230 5.230 21 C -0.093 4.093 22 C -0.196 4.196 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.107 0.893 26 H 0.182 0.818 27 H 0.227 0.773 28 H 0.226 0.774 29 H 0.178 0.822 30 H 0.111 0.889 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.161 -8.163 8.547 12.530 hybrid contribution 1.243 0.171 0.911 1.551 sum 5.405 -7.993 9.458 13.511 Atomic orbital electron populations 1.69953 1.08226 1.30321 1.29492 1.25999 0.94364 1.01739 0.91395 0.86481 0.81564 0.80582 0.79338 1.19309 1.19743 1.17938 1.19575 1.06125 0.94027 1.28919 0.89640 1.17614 0.88962 0.91825 0.89507 1.20492 1.07531 0.92181 1.04209 1.20332 0.94869 0.97372 0.95102 1.17937 1.10301 0.83611 0.99756 1.84654 1.36867 1.41610 1.48754 1.21598 0.85226 0.89159 0.89736 1.67430 1.38347 1.08697 1.07710 1.22470 0.88664 0.99138 0.96116 1.19410 0.93548 0.96932 0.95335 1.42015 1.13574 1.40605 1.45300 1.22554 0.99702 0.91807 0.91781 1.68150 1.04772 1.29922 1.20110 1.20355 0.98828 0.91320 0.98834 1.20613 1.03185 0.96518 0.99327 0.90250 0.88407 0.89286 0.81848 0.77314 0.77413 0.82152 0.88870 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.96 11.96 55.54 0.66 -18.30 16 2 C 0.09 2.15 4.72 -17.34 -0.08 2.06 16 3 Si 0.90 17.73 29.67 -169.99 -5.04 12.69 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 7 C -0.46 -11.87 8.92 -37.84 -0.34 -12.21 16 8 H 0.09 2.11 8.02 -52.49 -0.42 1.69 16 9 C 0.12 3.28 5.56 -106.80 -0.59 2.69 16 10 C -0.22 -5.62 9.74 -39.25 -0.38 -6.00 16 11 C -0.06 -1.40 9.40 -39.83 -0.37 -1.78 16 12 C -0.07 -1.80 5.19 -38.77 -0.20 -2.00 16 13 O -0.22 -5.24 10.03 -1.81 -0.02 -5.26 16 14 C 0.44 9.39 8.39 -91.31 -0.77 8.62 16 15 N -0.50 -9.20 10.45 -14.58 -0.15 -9.36 16 16 C 0.11 1.47 11.19 -17.00 -0.19 1.28 16 17 C 0.06 0.67 6.82 -83.41 -0.57 0.10 16 18 N -0.87 -6.47 9.12 32.59 0.30 -6.17 16 19 C 0.11 1.70 11.19 -17.00 -0.19 1.51 16 20 N -0.50 -9.97 9.00 -14.58 -0.13 -10.11 16 21 C -0.07 -1.86 9.92 -39.83 -0.40 -2.25 16 22 C -0.18 -4.62 8.75 -39.25 -0.34 -4.97 16 23 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 24 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 25 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 26 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.40 2.25 8.87 -40.82 -0.36 1.89 16 28 H 0.40 2.06 8.87 -40.82 -0.36 1.70 16 29 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 31 H 0.11 2.81 6.66 -52.49 -0.35 2.46 16 LS Contribution 282.36 15.07 4.26 4.26 Total: -1.00 -30.64 282.36 -7.30 -37.93 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -2.74 Total: 7.26 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -4.43 Total: -12.95 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.68 Total: -43.93 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.02 Total: -5.26 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.04 Total: 12.69 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.64 -7.30 -37.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040455925.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.727 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds