Wall clock time and date at job start Mon Mar 30 2020 05:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86796 * 119.99839 * 2 1 4 4 H 1.48503 * 109.47392 * 274.98111 * 3 2 1 5 5 H 1.48511 * 109.47271 * 34.98010 * 3 2 1 6 6 H 1.48500 * 109.47348 * 154.97860 * 3 2 1 7 7 C 1.39885 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00049 * 146.35773 * 7 2 1 9 9 C 1.41203 * 119.99781 * 326.36358 * 7 2 1 10 10 C 1.40838 * 120.17648 * 156.72989 * 9 7 2 11 11 C 1.36422 * 119.81483 * 180.02562 * 10 9 7 12 12 C 1.39335 * 120.17962 * 0.02562 * 11 10 9 13 13 O 1.35668 * 119.81647 * 179.97438 * 12 11 10 14 14 C 1.35547 * 118.00028 * 75.62755 * 13 12 11 15 15 N 1.32292 * 119.10664 * 175.55585 * 14 13 12 16 16 C 1.32271 * 120.83604 * 180.02562 * 15 14 13 17 17 C 1.39219 * 119.08221 * 359.97438 * 16 15 14 18 18 N 1.39979 * 120.80956 * 180.02562 * 17 16 15 19 19 C 1.39213 * 118.37617 * 359.97438 * 17 16 15 20 20 N 1.32272 * 119.11015 * 355.53616 * 14 13 12 21 21 C 1.39333 * 120.36442 * 0.25694 * 12 11 10 22 22 C 1.36421 * 120.18203 * 359.44339 * 21 12 11 23 23 H 0.97000 * 120.00201 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.09437 * 359.97438 * 10 9 7 25 25 H 1.07999 * 119.91130 * 179.97438 * 11 10 9 26 26 H 1.07992 * 120.46007 * 179.97438 * 16 15 14 27 27 H 0.96994 * 119.99171 * 179.97438 * 18 17 16 28 28 H 0.96998 * 119.99834 * 359.97438 * 18 17 16 29 29 H 1.08001 * 120.45588 * 180.02562 * 19 17 16 30 30 H 1.08000 * 119.91249 * 179.69983 * 21 12 11 31 31 H 1.08000 * 120.09947 * 180.29567 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3850 2.1073 -1.3948 5 1 1.4968 2.6201 0.8027 6 1 3.5890 1.4122 0.5922 7 6 2.0083 -1.2114 0.0005 8 1 2.9526 -1.2899 -0.5176 9 6 1.4797 -2.3316 0.6784 10 6 1.8714 -3.6328 0.3084 11 6 1.3556 -4.7098 0.9680 12 6 0.4432 -4.5251 2.0048 13 8 -0.0655 -5.6015 2.6554 14 6 0.7300 -6.2400 3.5480 15 7 0.2286 -7.2364 4.2593 16 6 0.9740 -7.8828 5.1402 17 6 2.3018 -7.5016 5.3124 18 7 3.1233 -8.1611 6.2342 19 6 2.7930 -6.4494 4.5446 20 7 1.9867 -5.8503 3.6840 21 6 0.0460 -3.2414 2.3731 22 6 0.5570 -2.1537 1.7276 23 1 -0.4850 0.8400 0.0004 24 1 2.5776 -3.7776 -0.4958 25 1 1.6546 -5.7083 0.6853 26 1 0.5583 -8.6950 5.7179 27 1 4.0469 -7.8859 6.3443 28 1 2.7689 -8.8931 6.7628 29 1 3.8181 -6.1262 4.6506 30 1 -0.6653 -3.1070 3.1746 31 1 0.2518 -1.1590 2.0174 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040455925.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:23 Heat of formation + Delta-G solvation = 23.675534 kcal Electronic energy + Delta-G solvation = -17713.883479 eV Core-core repulsion = 14767.056591 eV Total energy + Delta-G solvation = -2946.826888 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.13852 -40.34010 -38.43263 -35.94001 -35.34398 -34.67093 -31.66975 -31.27552 -29.64831 -27.04705 -25.66587 -24.43452 -23.10731 -22.59183 -19.90275 -19.39120 -19.32054 -17.72837 -17.29423 -16.93006 -16.84494 -16.17773 -15.83356 -15.57103 -15.35404 -14.57781 -14.32613 -14.09990 -13.87974 -13.75160 -13.14253 -12.87166 -12.54294 -12.46217 -12.31657 -11.93929 -11.91460 -11.78528 -11.12836 -10.87363 -10.09956 -9.59020 -9.37351 -8.85725 -8.45717 -6.34673 0.17056 0.26362 0.65127 1.07157 1.37300 1.43763 1.56897 2.07241 2.18177 2.62902 2.88532 2.91342 3.33569 3.62073 3.69530 3.88231 4.02534 4.29580 4.32193 4.77487 4.83317 5.02153 5.07834 5.16520 5.26786 5.56470 5.60019 5.92910 5.96415 6.00387 6.17283 6.37722 6.50412 6.69802 6.80091 6.93542 6.99226 7.39547 8.13453 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.039451 B = 0.004504 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.563876 B = 6215.850320 C = 6496.265466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.051 3.949 3 Si 0.976 3.024 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.492 4.492 8 H 0.088 0.912 9 C 0.097 3.903 10 C -0.236 4.236 11 C -0.060 4.060 12 C -0.065 4.065 13 O -0.246 6.246 14 C 0.403 3.597 15 N -0.513 5.513 16 C 0.099 3.901 17 C 0.094 3.906 18 N -0.841 5.841 19 C 0.090 3.910 20 N -0.534 5.534 21 C -0.085 4.085 22 C -0.192 4.192 23 H 0.297 0.703 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.209 0.791 27 H 0.413 0.587 28 H 0.415 0.585 29 H 0.190 0.810 30 H 0.102 0.898 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 -9.807 11.271 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.170 4.170 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.518 4.518 8 H 0.106 0.894 9 C 0.094 3.906 10 C -0.255 4.255 11 C -0.079 4.079 12 C -0.108 4.108 13 O -0.147 6.147 14 C 0.101 3.899 15 N -0.238 5.238 16 C -0.073 4.073 17 C -0.017 4.017 18 N -0.385 5.385 19 C -0.081 4.081 20 N -0.260 5.260 21 C -0.104 4.104 22 C -0.211 4.211 23 H 0.108 0.892 24 H 0.127 0.873 25 H 0.119 0.881 26 H 0.226 0.774 27 H 0.244 0.756 28 H 0.247 0.753 29 H 0.207 0.793 30 H 0.120 0.880 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.804 -9.190 10.421 15.058 hybrid contribution 0.812 0.169 0.585 1.015 sum 6.617 -9.022 11.006 15.694 Atomic orbital electron populations 1.69960 1.09783 1.31974 1.29688 1.26867 0.94999 1.04911 0.90214 0.85305 0.79718 0.75625 0.79846 1.18084 1.18789 1.17979 1.19835 1.06636 0.95192 1.30128 0.89412 1.17918 0.89672 0.92796 0.90176 1.20677 1.08070 0.92054 1.04691 1.20449 0.94783 0.97722 0.94957 1.17965 1.09153 0.83919 0.99772 1.84436 1.38310 1.41657 1.50332 1.21311 0.85839 0.91156 0.91640 1.67362 1.39741 1.08339 1.08352 1.23223 0.89142 0.99552 0.95333 1.19363 0.93357 0.95029 0.93961 1.42042 1.13743 1.39679 1.43076 1.23068 1.00474 0.92765 0.91797 1.68004 1.04797 1.31339 1.21907 1.20502 0.99232 0.91570 0.99137 1.20571 1.04164 0.96362 0.99988 0.89158 0.87293 0.88096 0.77445 0.75597 0.75333 0.79323 0.88022 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.35 11.96 21.82 0.26 -40.09 16 2 C 0.05 2.51 4.72 85.23 0.40 2.91 16 3 Si 0.98 36.30 29.67 68.60 2.04 38.33 16 4 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 5 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 6 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.49 -26.04 8.92 23.40 0.21 -25.83 16 8 H 0.09 4.44 8.02 -2.91 -0.02 4.41 16 9 C 0.10 5.34 5.56 -21.28 -0.12 5.22 16 10 C -0.24 -12.17 9.74 22.48 0.22 -11.95 16 11 C -0.06 -3.02 9.40 22.11 0.21 -2.81 16 12 C -0.06 -3.32 5.19 22.80 0.12 -3.21 16 13 O -0.25 -12.17 10.03 -29.39 -0.29 -12.46 16 14 C 0.40 17.25 8.39 180.59 1.52 18.76 16 15 N -0.51 -18.62 10.45 -312.95 -3.27 -21.90 16 16 C 0.10 2.40 11.19 84.86 0.95 3.35 16 17 C 0.09 1.96 6.82 38.31 0.26 2.22 16 18 N -0.84 -8.26 9.12 -50.81 -0.46 -8.73 16 19 C 0.09 2.50 11.19 84.86 0.95 3.45 16 20 N -0.53 -21.17 9.00 -312.96 -2.82 -23.99 16 21 C -0.09 -4.46 9.92 22.11 0.22 -4.24 16 22 C -0.19 -10.44 8.75 22.48 0.20 -10.24 16 23 H 0.30 13.42 8.30 -92.71 -0.77 12.65 16 24 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 25 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 26 H 0.21 2.99 8.06 -2.91 -0.02 2.97 16 27 H 0.41 2.53 8.87 -92.71 -0.82 1.71 16 28 H 0.42 1.96 8.87 -92.71 -0.82 1.14 16 29 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 31 H 0.10 5.39 6.66 -2.91 -0.02 5.37 16 Total: -1.00 -70.15 282.36 0.13 -70.02 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.45 Total: 21.17 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 5.13 Total: -22.36 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -6.29 Total: -94.70 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.29 Total: -12.46 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.04 Total: 38.33 kcal Total: -70.15 0.13 -70.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040455925.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.695 kcal (2) G-P(sol) polarization free energy of solvation -70.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds