Wall clock time and date at job start Mon Mar 30 2020 04:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34394 * 126.60971 * 2 1 4 4 C 1.47947 * 106.78635 * 180.24340 * 3 2 1 5 5 O 1.21390 * 125.79150 * 179.72757 * 4 3 2 6 6 N 1.34526 * 108.41176 * 359.58585 * 4 3 2 7 7 C 1.39509 * 125.19721 * 180.15032 * 6 4 3 8 8 C 1.39428 * 119.82697 * 180.02562 * 7 6 4 9 9 C 1.36393 * 120.17131 * 179.72118 * 8 7 6 10 10 C 1.40857 * 119.82146 * 0.53043 * 9 8 7 11 11 C 1.41176 * 120.16646 * 179.72203 * 10 9 8 12 12 H 1.08003 * 119.99877 * 204.59112 * 11 10 9 13 13 C 1.39901 * 119.99961 * 24.59525 * 11 10 9 14 14 N 1.30875 * 120.00024 * 17.92559 * 13 11 10 15 15 Si 1.86803 * 119.99758 * 197.92947 * 13 11 10 16 16 H 1.48495 * 109.46858 * 89.99963 * 15 13 11 17 17 H 1.48500 * 109.46961 * 209.99862 * 15 13 11 18 18 H 1.48498 * 109.46996 * 329.99635 * 15 13 11 19 19 C 1.40856 * 119.66901 * 359.74814 * 10 9 8 20 20 C 1.36398 * 119.81770 * 359.97438 * 19 10 9 21 21 C 1.34514 * 109.59980 * 0.41907 * 6 4 3 22 22 O 1.21394 * 125.79231 * 179.75488 * 21 6 4 23 23 H 1.08999 * 109.46941 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46841 * 119.97148 * 1 2 3 25 25 H 1.08993 * 109.46952 * 239.97491 * 1 2 3 26 26 H 1.08002 * 126.60487 * 359.97438 * 3 2 1 27 27 H 1.07995 * 119.91132 * 359.97438 * 8 7 6 28 28 H 1.08003 * 120.09045 * 180.25547 * 9 8 7 29 29 H 0.96996 * 119.99797 * 179.97438 * 14 13 11 30 30 H 1.07994 * 120.09689 * 179.97438 * 19 10 9 31 31 H 1.08005 * 119.91002 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3085 1.0788 0.0000 4 6 3.7003 0.5771 -0.0060 5 8 4.7020 1.2626 -0.0124 6 7 3.6672 -0.7678 -0.0001 7 6 4.7871 -1.5997 -0.0001 8 6 4.6225 -2.9842 0.0059 9 6 5.7124 -3.8041 0.0002 10 6 7.0068 -3.2487 -0.0005 11 6 8.1401 -4.0906 -0.0005 12 1 9.0809 -3.7297 0.3883 13 6 8.0445 -5.3923 -0.5041 14 7 7.0441 -5.7215 -1.2811 15 14 9.3446 -6.6605 -0.0675 16 1 8.9424 -7.3758 1.1702 17 1 9.4796 -7.6344 -1.1804 18 1 10.6454 -5.9795 0.1548 19 6 7.1649 -1.8490 -0.0007 20 6 6.0651 -1.0423 -0.0007 21 6 2.3892 -1.1877 -0.0001 22 8 2.0221 -2.3448 0.0003 23 1 -0.3633 1.0277 0.0005 24 1 -0.3633 -0.5134 -0.8902 25 1 -0.3633 -0.5142 0.8897 26 1 1.9966 2.1128 -0.0004 27 1 3.6293 -3.4084 0.0109 28 1 5.5833 -4.8764 0.0006 29 1 6.9780 -6.6239 -1.6306 30 1 8.1541 -1.4158 -0.0007 31 1 6.1846 0.0312 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048347896.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:58 Heat of formation + Delta-G solvation = -18.085690 kcal Electronic energy + Delta-G solvation = -18093.591234 eV Core-core repulsion = 15112.660692 eV Total energy + Delta-G solvation = -2980.930541 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.55648 -39.85737 -39.46150 -37.35760 -36.14099 -34.67562 -31.67717 -31.37318 -29.26884 -27.02556 -25.74460 -23.84880 -23.05925 -21.42228 -20.76264 -19.38932 -18.78787 -17.82519 -17.31842 -16.92572 -16.77309 -15.95763 -15.19493 -15.18962 -15.09245 -14.66769 -14.51759 -14.14560 -14.02553 -13.85343 -13.61479 -13.28007 -12.96737 -12.85515 -12.59341 -12.03973 -11.91839 -11.70749 -11.27875 -11.02780 -10.76700 -10.68936 -9.67263 -9.14034 -8.74266 -6.41092 -0.98316 0.58818 0.97432 1.36270 1.42338 1.45161 1.50327 1.51542 1.91169 2.16678 2.65149 2.77873 3.08538 3.59242 4.06099 4.24231 4.31329 4.32123 4.44199 4.65211 4.82020 4.84779 4.93591 5.02235 5.09533 5.19630 5.29554 5.49318 5.57201 5.69939 5.94502 6.09596 6.15829 6.18852 6.50175 6.61069 6.79193 6.88604 8.21932 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.039808 B = 0.005199 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.209332 B = 5384.352997 C = 6004.258079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.097 4.097 3 C -0.125 4.125 4 C 0.522 3.478 5 O -0.487 6.487 6 N -0.521 5.521 7 C -0.032 4.032 8 C -0.114 4.114 9 C -0.175 4.175 10 C 0.081 3.919 11 C -0.485 4.485 12 H 0.085 0.915 13 C 0.034 3.966 14 N -0.818 5.818 15 Si 0.991 3.009 16 H -0.261 1.261 17 H -0.266 1.266 18 H -0.255 1.255 19 C -0.227 4.227 20 C -0.100 4.100 21 C 0.522 3.478 22 O -0.486 6.486 23 H 0.122 0.878 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.235 0.765 27 H 0.123 0.877 28 H 0.110 0.890 29 H 0.293 0.707 30 H 0.111 0.889 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 9.183 1.861 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.146 4.146 4 C 0.314 3.686 5 O -0.361 6.361 6 N -0.254 5.254 7 C -0.122 4.122 8 C -0.134 4.134 9 C -0.195 4.195 10 C 0.078 3.922 11 C -0.513 4.513 12 H 0.103 0.897 13 C -0.183 4.183 14 N -0.443 5.443 15 Si 0.810 3.190 16 H -0.185 1.185 17 H -0.190 1.190 18 H -0.178 1.178 19 C -0.247 4.247 20 C -0.119 4.119 21 C 0.314 3.686 22 O -0.359 6.359 23 H 0.141 0.859 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.251 0.749 27 H 0.141 0.859 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.242 8.710 1.701 14.323 hybrid contribution 0.995 -1.007 -0.047 1.417 sum -10.247 7.703 1.655 12.925 Atomic orbital electron populations 1.20693 0.83265 1.06526 1.04252 1.23436 0.99427 0.89738 0.97566 1.24653 0.87153 1.02913 0.99847 1.20330 0.92873 0.80625 0.74736 1.90638 1.39257 1.61747 1.44467 1.43897 1.07609 1.09159 1.64713 1.17390 0.85053 0.89314 1.20425 1.20865 0.99677 0.91535 1.01308 1.20929 0.91983 0.98992 1.07584 1.18086 0.93676 0.92232 0.88166 1.19923 0.97327 0.97739 1.36330 0.89679 1.26923 0.98908 1.00883 0.91557 1.69895 1.30690 1.21751 1.21916 0.85077 0.78106 0.76748 0.79047 1.18546 1.19018 1.17801 1.20841 0.97312 0.93322 1.13244 1.20802 0.90692 1.00243 1.00208 1.20299 0.82625 0.90823 0.74884 1.90645 1.79287 1.21854 1.44160 0.85941 0.89318 0.89223 0.74902 0.85918 0.87165 0.89656 0.87085 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 10.44 71.24 0.74 -0.26 16 2 C -0.10 -2.01 6.38 -18.17 -0.12 -2.13 16 3 C -0.12 -2.37 11.06 23.97 0.27 -2.11 16 4 C 0.52 17.47 7.92 86.86 0.69 18.16 16 5 O -0.49 -18.81 14.98 -3.37 -0.05 -18.86 16 6 N -0.52 -20.89 2.84 -584.81 -1.66 -22.55 16 7 C -0.03 -1.57 6.61 38.49 0.25 -1.32 16 8 C -0.11 -6.02 9.27 22.13 0.21 -5.82 16 9 C -0.17 -9.86 8.64 22.48 0.19 -9.67 16 10 C 0.08 4.59 5.57 -21.28 -0.12 4.47 16 11 C -0.48 -26.44 9.04 23.39 0.21 -26.23 16 12 H 0.09 4.41 7.91 -2.91 -0.02 4.38 16 13 C 0.03 1.70 5.13 85.24 0.44 2.14 16 14 N -0.82 -43.33 10.96 21.82 0.24 -43.09 16 15 Si 0.99 37.93 29.60 68.60 2.03 39.96 16 16 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 17 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 18 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 19 C -0.23 -11.96 9.74 22.48 0.22 -11.74 16 20 C -0.10 -5.01 9.27 22.13 0.21 -4.80 16 21 C 0.52 18.21 7.91 86.86 0.69 18.89 16 22 O -0.49 -19.80 14.98 -3.38 -0.05 -19.85 16 23 H 0.12 0.41 8.12 -2.39 -0.02 0.39 16 24 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.23 1.82 8.06 -2.91 -0.02 1.80 16 27 H 0.12 6.33 5.30 -2.91 -0.02 6.31 16 28 H 0.11 6.39 6.16 -2.91 -0.02 6.37 16 29 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 30 H 0.11 5.42 8.06 -2.91 -0.02 5.40 16 31 H 0.13 6.28 5.30 -2.91 -0.02 6.26 16 Total: -1.00 -71.00 275.14 5.56 -65.45 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 1.17 Total: 19.34 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 3.88 Total: -20.40 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -1.42 Total: -65.64 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.10 Total: -38.71 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -71.00 5.56 -65.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048347896.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.360 kcal (2) G-P(sol) polarization free energy of solvation -71.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds