Wall clock time and date at job start Mon Mar 30 2020 04:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 N 1.33238 * 120.56229 * 43.61352 * 3 2 1 5 5 C 1.31565 * 120.69914 * 180.27542 * 4 3 2 6 6 N 1.31892 * 121.92698 * 359.97438 * 5 4 3 7 7 C 1.32276 * 121.06693 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.41194 * 180.02562 * 7 6 5 9 9 F 1.39902 * 109.47130 * 244.96787 * 8 7 6 10 10 F 1.39898 * 109.47400 * 4.96981 * 8 7 6 11 11 F 1.39901 * 109.47043 * 124.96957 * 8 7 6 12 12 C 1.38609 * 119.17143 * 359.97438 * 7 6 5 13 13 C 1.50702 * 120.86817 * 179.97438 * 12 7 6 14 14 C 1.50703 * 109.47013 * 93.70785 * 13 12 7 15 15 H 1.08004 * 120.00171 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00159 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99794 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99857 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47128 * 60.00364 * 18 16 14 20 20 H 1.48500 * 109.46778 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47057 * 300.00162 * 18 16 14 22 22 H 1.08007 * 119.03923 * 179.97438 * 5 4 3 23 23 H 1.08998 * 109.47402 * 213.71011 * 13 12 7 24 24 H 1.08999 * 109.47459 * 333.71267 * 13 12 7 25 25 H 0.97008 * 119.99804 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2459 -0.8297 -0.7914 5 6 4.5615 -0.8351 -0.7896 6 7 5.2613 -0.0291 -0.0149 7 6 4.6631 0.8246 0.7993 8 6 5.4772 1.7393 1.6777 9 9 5.2559 1.4151 3.0205 10 9 6.8353 1.5861 1.3787 11 9 5.0963 3.0659 1.4494 12 6 3.2781 0.8682 0.8336 13 6 2.5571 1.8256 1.7472 14 6 2.2415 3.0942 0.9973 15 1 2.5335 3.1967 -0.0374 16 6 1.5791 4.1236 1.6319 17 7 1.2232 3.9985 2.8917 18 14 1.1874 5.6957 0.7022 19 1 0.3246 5.3791 -0.4642 20 1 0.4770 6.6392 1.6024 21 1 2.4497 6.3188 0.2295 22 1 5.0838 -1.5197 -1.4416 23 1 1.6304 1.3686 2.0942 24 1 3.1905 2.0577 2.6033 25 1 0.7575 4.7229 3.3383 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075891980.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:42 Heat of formation + Delta-G solvation = -68.634984 kcal Electronic energy + Delta-G solvation = -18954.061527 eV Core-core repulsion = 15325.541920 eV Total energy + Delta-G solvation = -3628.519607 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.047 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.75900 -47.30849 -47.11573 -41.22884 -36.51122 -34.59654 -33.98278 -32.34315 -28.48065 -27.30802 -24.91799 -23.72141 -21.85237 -19.93026 -18.72623 -18.09009 -17.60910 -16.69293 -16.51338 -15.12890 -15.05961 -14.94440 -14.06486 -13.99962 -13.76137 -13.60436 -13.32581 -13.30416 -13.11283 -12.96926 -12.69034 -12.49669 -12.17027 -11.63747 -11.51669 -10.85823 -10.82719 -10.78258 -10.13072 -9.93606 -9.53472 -9.00971 -8.62759 -6.26923 -4.34296 0.34443 0.77996 2.58911 2.85416 2.96938 3.23116 3.27411 3.30074 3.42211 3.73155 3.86491 4.12728 4.27769 4.51206 4.65107 4.73258 4.84445 5.09865 5.33923 5.62679 6.04919 6.66721 7.02790 7.04412 7.61250 7.62437 7.78722 7.87562 8.65662 9.31825 10.83000 Molecular weight = 257.05amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.010710 C = 0.007641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.686295 B = 2613.686697 C = 3663.409318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C 0.277 3.723 3 C 0.240 3.760 4 N -0.468 5.468 5 C 0.275 3.725 6 N -0.464 5.464 7 C 0.078 3.922 8 C 0.528 3.472 9 F -0.167 7.167 10 F -0.170 7.170 11 F -0.141 7.141 12 C -0.038 4.038 13 C 0.037 3.963 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.071 3.929 17 N -0.882 5.882 18 Si 0.899 3.101 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.272 1.272 22 H 0.213 0.787 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.324 -6.472 -3.420 11.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.044 5.044 2 C -0.041 4.041 3 C 0.091 3.909 4 N -0.182 5.182 5 C -0.013 4.013 6 N -0.177 5.177 7 C -0.072 4.072 8 C 0.472 3.528 9 F -0.148 7.148 10 F -0.151 7.151 11 F -0.121 7.121 12 C -0.044 4.044 13 C -0.001 4.001 14 C -0.559 4.559 15 H 0.078 0.922 16 C -0.133 4.133 17 N -0.519 5.519 18 Si 0.725 3.275 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.197 1.197 22 H 0.229 0.771 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.012 -7.008 -3.861 10.639 hybrid contribution -0.030 1.508 0.129 1.514 sum 6.982 -5.500 -3.732 9.640 Atomic orbital electron populations 1.81161 1.11116 1.06443 1.05715 1.24194 0.90923 0.94190 0.94782 1.16426 0.87253 0.93390 0.93844 1.68221 1.10806 1.20180 1.18989 1.24799 0.85512 0.95575 0.95408 1.67860 1.42142 1.03613 1.04107 1.21349 0.91303 0.96897 0.97634 1.17526 0.77161 0.79890 0.78180 1.93226 1.94367 1.92636 1.34574 1.93198 1.33246 1.95618 1.93027 1.93402 1.90578 1.34053 1.94115 1.22300 0.93521 0.93526 0.95100 1.18749 0.96265 0.91791 0.93262 1.20672 1.39353 0.98129 0.97745 0.92206 1.24906 0.94823 0.98660 0.94904 1.69910 1.38457 1.33333 1.10183 0.86527 0.78866 0.82373 0.79696 1.19983 1.20871 1.19699 0.77081 0.93418 0.92833 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -7.49 18.54 41.84 0.78 -6.71 15 2 C 0.28 5.33 14.26 -22.47 -0.32 5.01 15 3 C 0.24 4.30 6.61 -84.78 -0.56 3.74 15 4 N -0.47 -7.20 10.38 -12.55 -0.13 -7.33 15 5 C 0.28 3.61 12.27 -92.27 -1.13 2.48 15 6 N -0.46 -7.17 9.86 -10.83 -0.11 -7.28 15 7 C 0.08 1.38 6.29 -82.26 -0.52 0.86 15 8 C 0.53 9.43 2.80 36.00 0.10 9.53 15 9 F -0.17 -2.99 15.88 2.25 0.04 -2.95 15 10 F -0.17 -2.78 16.90 2.25 0.04 -2.74 15 11 F -0.14 -2.82 15.17 2.25 0.03 -2.79 15 12 C -0.04 -0.73 5.10 -103.93 -0.53 -1.26 15 13 C 0.04 0.85 3.96 -29.03 -0.12 0.73 15 14 C -0.52 -13.25 8.04 -34.44 -0.28 -13.52 15 15 H 0.06 1.51 7.74 -52.48 -0.41 1.10 15 16 C 0.07 1.88 5.46 -17.82 -0.10 1.78 15 17 N -0.88 -24.39 13.29 55.43 0.74 -23.65 15 18 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 15 19 H -0.27 -6.30 7.11 56.52 0.40 -5.89 15 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 22 H 0.21 1.72 8.06 -52.48 -0.42 1.30 15 23 H 0.05 1.17 7.32 -51.93 -0.38 0.79 15 24 H 0.05 1.28 5.71 -51.93 -0.30 0.98 15 25 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 LS Contribution 252.81 15.07 3.81 3.81 Total: -1.00 -27.51 252.81 -3.92 -31.43 By element: Atomic # 1 Polarization: -6.14 SS G_CDS: -0.64 Total: -6.78 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -3.45 Total: 9.36 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 1.27 Total: -44.98 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 0.11 Total: -8.47 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.51 -3.92 -31.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075891980.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.205 kcal (2) G-P(sol) polarization free energy of solvation -27.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds