Wall clock time and date at job start Mon Mar 30 2020 04:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00014 * 2 1 4 4 C 1.53005 * 109.46916 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47022 * 179.97438 * 4 3 2 6 6 N 1.29527 * 124.55789 * 90.02321 * 5 4 3 7 7 C 1.30676 * 117.62601 * 180.02562 * 6 5 4 8 8 C 1.50700 * 123.21984 * 180.27045 * 7 6 5 9 9 O 1.42898 * 109.47141 * 269.70297 * 8 7 6 10 10 C 1.42902 * 114.00263 * 180.02562 * 9 8 7 11 11 C 1.38585 * 113.55337 * 359.97438 * 7 6 5 12 12 C 1.40038 * 126.25461 * 180.02562 * 11 7 6 13 13 H 1.08004 * 119.99887 * 353.41532 * 12 11 7 14 14 C 1.40070 * 120.00010 * 173.40353 * 12 11 7 15 15 N 1.30861 * 120.00116 * 6.41431 * 14 12 11 16 16 Si 1.86807 * 120.00088 * 186.40887 * 14 12 11 17 17 H 1.48492 * 109.47081 * 94.98889 * 16 14 12 18 18 H 1.48495 * 109.47033 * 214.99058 * 16 14 12 19 19 H 1.48498 * 109.46908 * 334.98721 * 16 14 12 20 20 S 1.70877 * 124.56320 * 270.02236 * 5 4 3 21 21 H 1.09004 * 109.47509 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47139 * 300.00229 * 1 2 3 23 23 H 1.09001 * 109.47511 * 60.00071 * 1 2 3 24 24 H 1.08995 * 109.47558 * 59.99749 * 3 2 1 25 25 H 1.09004 * 109.46845 * 299.99261 * 3 2 1 26 26 H 1.09002 * 109.47303 * 59.99843 * 4 3 2 27 27 H 1.08995 * 109.46836 * 299.99352 * 4 3 2 28 28 H 1.08998 * 109.47290 * 29.70337 * 8 7 6 29 29 H 1.08996 * 109.47172 * 149.69928 * 8 7 6 30 30 H 1.08995 * 109.46850 * 59.99625 * 10 9 8 31 31 H 1.08994 * 109.47140 * 179.97438 * 10 9 8 32 32 H 1.08998 * 109.46607 * 299.99602 * 10 9 8 33 33 H 0.97006 * 120.00467 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5613 -0.0013 6 7 4.4482 3.2327 1.0651 7 6 4.9752 4.4179 0.9069 8 6 5.3768 5.3033 2.0583 9 8 4.2752 6.1363 2.4253 10 6 4.5521 7.0201 3.5137 11 6 5.1354 4.7799 -0.4212 12 6 5.6716 5.9847 -0.8923 13 1 5.9080 6.7783 -0.1989 14 6 5.9015 6.1606 -2.2628 15 7 5.5008 5.2523 -3.1153 16 14 6.7799 7.6919 -2.8736 17 1 8.2282 7.4032 -3.0284 18 1 6.2131 8.0979 -4.1847 19 1 6.5965 8.7920 -1.8931 20 16 4.5416 3.4468 -1.4089 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6886 1.8464 0.8899 25 1 1.6886 1.8463 -0.8901 26 1 3.8567 0.6438 -0.8908 27 1 3.8573 0.6436 0.8891 28 1 5.6642 4.6853 2.9089 29 1 6.2201 5.9264 1.7606 30 1 5.3781 7.6787 3.2457 31 1 3.6668 7.6178 3.7305 32 1 4.8225 6.4379 4.3946 33 1 5.6603 5.3738 -4.0644 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082445161.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:40 Heat of formation + Delta-G solvation = -102.431220 kcal Electronic energy + Delta-G solvation = -16759.401031 eV Core-core repulsion = 13910.256945 eV Total energy + Delta-G solvation = -2849.144087 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.89606 -38.86122 -38.10660 -36.20667 -33.67510 -31.19080 -29.43622 -27.65875 -26.75758 -25.53095 -24.81620 -22.33756 -20.64427 -19.06924 -17.83899 -17.51292 -17.19059 -16.87584 -16.77078 -16.23857 -15.95108 -15.62727 -15.04540 -14.42097 -14.24593 -13.98145 -13.65987 -13.34819 -13.16008 -12.96486 -12.76544 -12.67001 -12.23612 -12.15416 -12.08949 -11.96203 -11.50629 -11.23298 -10.65091 -10.47467 -9.82612 -9.72952 -9.12475 -8.89969 -6.58264 0.60527 1.36557 1.44346 1.51506 1.55308 1.92482 2.14467 2.16519 2.82790 2.92553 3.51721 3.99851 4.18024 4.23028 4.39607 4.45040 4.50795 4.53836 4.58373 4.59929 4.67338 4.79725 4.82383 4.89056 4.92476 4.98858 5.10726 5.35697 5.76039 5.98242 6.19073 6.32526 6.41349 6.49567 7.79604 7.94468 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.006994 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.528124 B = 4002.249251 C = 5278.019178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.083 3.917 4 C 0.002 3.998 5 C -0.184 4.184 6 N -0.436 5.436 7 C -0.187 4.187 8 C 0.186 3.814 9 O -0.421 6.421 10 C 0.025 3.975 11 C -0.014 4.014 12 C -0.378 4.378 13 H 0.105 0.895 14 C 0.013 3.987 15 N -0.787 5.787 16 Si 1.012 2.988 17 H -0.256 1.256 18 H -0.259 1.259 19 H -0.252 1.252 20 S 0.113 5.887 21 H 0.108 0.892 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.929 1.143 0.811 2.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.006 3.994 4 C -0.039 4.039 5 C -0.454 4.454 6 N -0.149 5.149 7 C -0.320 4.320 8 C 0.108 3.892 9 O -0.341 6.341 10 C -0.071 4.071 11 C -0.138 4.138 12 C -0.414 4.414 13 H 0.123 0.877 14 C -0.208 4.208 15 N -0.413 5.413 16 Si 0.830 3.170 17 H -0.180 1.180 18 H -0.183 1.183 19 H -0.175 1.175 20 S 0.365 5.635 21 H 0.126 0.874 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.287 0.284 -0.019 2.305 hybrid contribution 0.495 1.196 0.720 1.481 sum -1.792 1.480 0.702 2.428 Atomic orbital electron populations 1.22961 0.79486 1.04110 1.00602 1.87782 1.21625 1.28079 1.95545 1.22351 0.93559 0.83945 0.99580 1.19389 0.92226 0.89854 1.02449 1.26003 1.20887 1.04448 0.94088 1.64990 1.09125 1.06697 1.34090 1.19919 1.24115 0.95375 0.92576 1.20105 0.87406 0.89382 0.92319 1.87999 1.39338 1.53948 1.52771 1.22877 1.02392 0.93066 0.88756 1.23440 0.97675 0.98144 0.94552 1.19597 1.29664 0.98126 0.94009 0.87707 1.27299 0.95091 1.02426 0.95948 1.69044 1.32201 1.33919 1.06135 0.84688 0.78354 0.75359 0.78615 1.18030 1.18340 1.17537 1.83798 1.61166 1.09849 1.08722 0.87393 0.93785 0.93412 0.94502 0.93594 0.90430 0.91298 0.94122 0.92754 0.93258 0.88724 0.93572 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -13.95 10.70 -148.98 -1.59 -15.55 16 3 C 0.08 3.17 5.92 71.98 0.43 3.60 16 4 C 0.00 0.06 6.16 29.85 0.18 0.25 16 5 C -0.18 -9.22 6.61 88.45 0.59 -8.64 16 6 N -0.44 -23.62 10.48 -176.30 -1.85 -25.47 16 7 C -0.19 -10.03 6.53 42.81 0.28 -9.75 16 8 C 0.19 8.54 6.09 71.24 0.43 8.97 16 9 O -0.42 -18.80 10.69 -148.98 -1.59 -20.39 16 10 C 0.03 0.78 11.01 113.37 1.25 2.03 16 11 C -0.01 -0.78 6.24 22.79 0.14 -0.64 16 12 C -0.38 -18.82 8.88 23.15 0.21 -18.62 16 13 H 0.11 4.96 7.06 -2.91 -0.02 4.94 16 14 C 0.01 0.58 5.49 85.28 0.47 1.05 16 15 N -0.79 -36.41 10.80 21.86 0.24 -36.18 16 16 Si 1.01 33.08 29.57 68.60 2.03 35.11 16 17 H -0.26 -8.05 7.11 99.48 0.71 -7.34 16 18 H -0.26 -7.97 7.11 99.48 0.71 -7.27 16 19 H -0.25 -8.04 7.11 99.48 0.71 -7.33 16 20 S 0.11 5.73 20.26 -56.49 -1.14 4.58 16 21 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 22 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 27 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 2.33 7.24 -2.39 -0.02 2.32 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.31 12.64 8.30 -92.70 -0.77 11.87 16 Total: -1.00 -63.05 299.90 2.41 -60.65 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.10 Total: 17.14 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 5.22 Total: -19.90 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -1.61 Total: -61.64 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -3.19 Total: -35.94 kcal Atomic # 14 Polarization: 33.08 SS G_CDS: 2.03 Total: 35.11 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -1.14 Total: 4.58 kcal Total: -63.05 2.41 -60.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082445161.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.783 kcal (2) G-P(sol) polarization free energy of solvation -63.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds