Wall clock time and date at job start Mon Mar 30 2020 04:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99862 * 2 1 4 4 C 1.50697 * 109.47490 * 293.95562 * 3 2 1 5 5 H 1.07998 * 120.00195 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00374 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00318 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99688 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47013 * 90.00023 * 8 6 4 10 10 H 1.48493 * 109.47369 * 210.00117 * 8 6 4 11 11 H 1.48499 * 109.47290 * 330.00208 * 8 6 4 12 12 C 1.38585 * 111.00053 * 123.95952 * 2 1 3 13 13 N 1.32911 * 120.49141 * 295.58942 * 12 2 1 14 14 C 1.32438 * 120.63101 * 180.02562 * 13 12 2 15 15 N 1.38461 * 119.16934 * 179.97438 * 14 13 12 16 16 N 1.36599 * 119.99782 * 179.97438 * 15 14 13 17 17 N 1.32466 * 121.66530 * 0.24560 * 14 13 12 18 18 C 1.32520 * 120.94060 * 359.48807 * 17 14 13 19 19 C 1.38202 * 119.27267 * 0.50552 * 18 17 14 20 20 Cl 1.73593 * 120.76381 * 179.72752 * 19 18 17 21 21 H 1.08999 * 109.46960 * 301.79680 * 1 2 3 22 22 H 1.09001 * 109.46951 * 61.80033 * 1 2 3 23 23 H 1.09001 * 109.47004 * 181.80348 * 1 2 3 24 24 H 1.09000 * 109.47016 * 53.96248 * 3 2 1 25 25 H 1.09004 * 109.47136 * 173.95663 * 3 2 1 26 26 H 0.97004 * 120.00048 * 180.02562 * 7 6 4 27 27 H 0.96996 * 119.99403 * 359.97438 * 15 14 13 28 28 H 1.00901 * 111.00051 * 56.05240 * 16 15 14 29 29 H 1.00900 * 110.99567 * 179.97438 * 16 15 14 30 30 H 1.08000 * 120.36451 * 180.23753 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5117 -2.0484 6 6 2.0276 3.3492 -1.5288 7 7 1.7143 3.9391 -2.6617 8 14 3.0008 4.2758 -0.2312 9 1 4.4532 4.0624 -0.4555 10 1 2.6936 5.7257 -0.3235 11 1 2.6295 3.7760 1.1169 12 6 1.9657 -0.7227 1.0731 13 7 1.7455 -0.3167 2.3194 14 6 2.2193 -1.0049 3.3469 15 7 1.9724 -0.5541 4.6326 16 7 2.4525 -1.2511 5.7048 17 7 2.9279 -2.1109 3.1757 18 6 3.1812 -2.5766 1.9612 19 6 2.7055 -1.8888 0.8609 20 17 3.0205 -2.4602 -0.7478 21 1 -0.3633 0.5415 0.8734 22 1 -0.3633 0.4856 -0.9057 23 1 -0.3633 -1.0272 0.0323 24 1 1.5612 1.9273 0.8310 25 1 3.0797 1.3444 0.1082 26 1 1.9895 4.8550 -2.8239 27 1 1.4584 0.2567 4.7718 28 1 3.4528 -1.3675 5.6418 29 1 2.1948 -0.8036 6.5716 30 1 3.7568 -3.4814 1.8324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087884143.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:05 Heat of formation + Delta-G solvation = 75.278876 kcal Electronic energy + Delta-G solvation = -16931.806140 eV Core-core repulsion = 14017.076843 eV Total energy + Delta-G solvation = -2914.729297 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.074 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.20066 -39.03414 -37.70987 -37.20341 -34.89076 -34.03073 -32.19547 -29.97665 -28.97012 -27.38605 -25.21605 -24.00785 -22.39577 -20.07954 -19.20988 -18.74049 -17.54450 -17.33465 -17.00418 -16.55907 -16.25449 -15.82835 -15.21250 -15.03861 -14.73245 -14.42628 -13.51465 -13.41482 -13.06707 -12.68645 -12.55921 -12.45792 -12.31288 -12.06177 -12.00536 -11.64280 -11.57318 -10.82113 -10.29715 -10.23819 -9.61912 -8.63066 -8.30877 -6.34355 -0.13737 -0.00216 1.17108 1.30446 1.31348 1.41749 1.58274 2.30130 2.60457 2.66560 3.02012 3.06613 3.50331 3.83713 4.08839 4.30328 4.45735 4.56827 4.73006 4.88802 5.00997 5.05311 5.40209 5.44059 5.75353 5.85344 6.09885 6.43501 6.51099 6.58124 6.71169 7.27877 7.38325 8.84886 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.007624 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.392245 B = 3671.673034 C = 4582.030945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.486 5.486 3 C 0.191 3.809 4 C -0.514 4.514 5 H 0.051 0.949 6 C 0.020 3.980 7 N -0.938 5.938 8 Si 0.936 3.064 9 H -0.268 1.268 10 H -0.276 1.276 11 H -0.259 1.259 12 C 0.391 3.609 13 N -0.607 5.607 14 C 0.567 3.433 15 N -0.540 5.540 16 N -0.589 5.589 17 N -0.551 5.551 18 C 0.216 3.784 19 C -0.190 4.190 20 Cl -0.032 7.032 21 H 0.031 0.969 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.001 0.999 25 H 0.015 0.985 26 H 0.269 0.731 27 H 0.423 0.577 28 H 0.350 0.650 29 H 0.377 0.623 30 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -11.909 15.596 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.209 5.209 3 C 0.065 3.935 4 C -0.552 4.552 5 H 0.069 0.931 6 C -0.179 4.179 7 N -0.579 5.579 8 Si 0.760 3.240 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.183 1.183 12 C 0.152 3.848 13 N -0.336 5.336 14 C 0.207 3.793 15 N -0.269 5.269 16 N -0.219 5.219 17 N -0.274 5.274 18 C 0.048 3.952 19 C -0.227 4.227 20 Cl -0.004 7.004 21 H 0.050 0.950 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.019 0.981 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.265 0.735 28 H 0.166 0.834 29 H 0.194 0.806 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.718 -12.320 15.795 20.215 hybrid contribution 0.556 2.101 0.121 2.177 sum 3.273 -10.218 15.916 19.195 Atomic orbital electron populations 1.22164 0.84152 1.01430 1.01700 1.60172 1.10294 1.16570 1.33817 1.19837 0.94232 0.83433 0.95994 1.21087 1.35382 0.97502 1.01245 0.93050 1.25633 0.96739 0.98216 0.97311 1.70004 1.48080 1.13972 1.25809 0.85887 0.79580 0.78245 0.80305 1.19323 1.20151 1.18273 1.20109 0.88513 0.89767 0.86417 1.68030 1.29624 1.36387 0.99557 1.19075 0.88130 0.86405 0.85704 1.42492 1.57908 1.28058 0.98435 1.59861 1.19516 1.46319 0.96235 1.68132 1.20367 1.13989 1.24925 1.23451 0.90670 0.97353 0.83734 1.22266 1.09977 1.00114 0.90294 1.98351 1.94291 1.87435 1.20298 0.95040 0.90849 0.90847 0.98129 0.96730 0.92229 0.73500 0.83432 0.80622 0.76841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.04 9.18 127.69 1.17 3.22 16 2 N -0.49 -20.85 4.22 -730.45 -3.08 -23.93 16 3 C 0.19 9.42 3.54 85.56 0.30 9.72 16 4 C -0.51 -29.41 9.09 25.60 0.23 -29.18 16 5 H 0.05 3.22 7.34 -2.91 -0.02 3.20 16 6 C 0.02 1.13 5.47 84.66 0.46 1.59 16 7 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 8 Si 0.94 44.28 27.47 68.60 1.88 46.17 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.26 -11.77 6.54 99.48 0.65 -11.11 16 12 C 0.39 14.76 5.28 133.20 0.70 15.46 16 13 N -0.61 -21.73 9.99 -195.45 -1.95 -23.69 16 14 C 0.57 17.04 8.50 261.50 2.22 19.27 16 15 N -0.54 -12.15 6.63 -59.76 -0.40 -12.55 16 16 N -0.59 -9.55 10.02 37.02 0.37 -9.18 16 17 N -0.55 -15.24 9.80 -198.15 -1.94 -17.18 16 18 C 0.22 5.54 11.10 84.58 0.94 6.48 16 19 C -0.19 -6.04 6.38 22.62 0.14 -5.90 16 20 Cl -0.03 -1.00 28.57 -2.72 -0.08 -1.07 16 21 H 0.03 1.21 8.07 -2.39 -0.02 1.19 16 22 H 0.07 3.11 6.91 -2.39 -0.02 3.09 16 23 H 0.07 2.48 8.11 -2.39 -0.02 2.47 16 24 H 0.00 0.05 7.14 -2.39 -0.02 0.03 16 25 H 0.01 0.74 7.48 -2.38 -0.02 0.72 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 27 H 0.42 8.40 8.94 -215.50 -1.93 6.47 16 28 H 0.35 5.39 8.99 -210.55 -1.89 3.50 16 29 H 0.38 3.37 9.21 -210.56 -1.94 1.43 16 30 H 0.22 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -69.23 278.49 -3.31 -72.55 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.60 Total: 5.68 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 6.18 Total: 20.65 kcal Atomic # 7 Polarization: -137.27 SS G_CDS: -6.70 Total: -143.97 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.17 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.07 kcal Total: -69.23 -3.31 -72.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087884143.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.826 kcal (2) G-P(sol) polarization free energy of solvation -69.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds