Wall clock time and date at job start Mon Mar 30 2020 04:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00134 * 2 1 4 4 C 1.50696 * 109.46890 * 66.04853 * 3 2 1 5 5 H 1.08005 * 120.00410 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99843 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00127 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99783 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46999 * 60.00485 * 8 6 4 10 10 H 1.48500 * 109.46861 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47379 * 300.00215 * 8 6 4 12 12 C 1.38570 * 110.99729 * 236.04794 * 2 1 3 13 13 N 1.33032 * 120.51940 * 59.56170 * 12 2 1 14 14 C 1.31742 * 120.72382 * 180.02562 * 13 12 2 15 15 N 1.31789 * 121.84099 * 359.97438 * 14 13 12 16 16 C 1.32658 * 120.99038 * 359.97438 * 15 14 13 17 17 Cl 1.73604 * 120.41804 * 180.02562 * 16 15 14 18 18 C 1.38319 * 119.16318 * 0.02562 * 16 15 14 19 19 C 1.50701 * 120.83588 * 179.72310 * 18 16 15 20 20 O 1.42906 * 109.46599 * 84.85001 * 19 18 16 21 21 H 1.09004 * 109.47501 * 178.23276 * 1 2 3 22 22 H 1.09007 * 109.46843 * 298.23163 * 1 2 3 23 23 H 1.09000 * 109.47599 * 58.22687 * 1 2 3 24 24 H 1.08995 * 109.47083 * 186.04859 * 3 2 1 25 25 H 1.09000 * 109.47210 * 306.04824 * 3 2 1 26 26 H 0.97004 * 120.00247 * 179.97438 * 7 6 4 27 27 H 1.07992 * 119.08149 * 179.97438 * 14 13 12 28 28 H 1.08997 * 109.47422 * 204.84810 * 19 18 16 29 29 H 1.09005 * 109.47425 * 324.85555 * 19 18 16 30 30 H 0.96707 * 113.99656 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0747 1.5111 2.0489 6 6 2.0277 3.3491 1.5289 7 7 2.7129 4.0015 0.6155 8 14 1.5828 4.1868 3.1382 9 1 2.1736 3.4292 4.2705 10 1 2.1151 5.5731 3.1383 11 1 0.1055 4.2243 3.2849 12 6 1.9655 -0.7225 -1.0731 13 7 1.6655 -0.3714 -2.3207 14 6 2.1350 -1.0557 -3.3439 15 7 2.9138 -2.1060 -3.1793 16 6 3.2583 -2.5175 -1.9661 17 17 4.2857 -3.9025 -1.7665 18 6 2.7886 -1.8290 -0.8622 19 6 3.1513 -2.2673 0.5333 20 8 4.4141 -1.7053 0.8959 21 1 -0.3634 -1.0272 -0.0317 22 1 -0.3633 0.4862 0.9055 23 1 -0.3634 0.5411 -0.8736 24 1 3.0797 1.3444 -0.1083 25 1 1.5611 1.9274 -0.8309 26 1 2.9875 4.9176 0.7774 27 1 1.8742 -0.7474 -4.3455 28 1 2.3874 -1.9253 1.2316 29 1 3.2143 -3.3550 0.5678 30 1 4.7110 -1.9456 1.7843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124119343.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:48 Heat of formation + Delta-G solvation = -15.003372 kcal Electronic energy + Delta-G solvation = -17096.494423 eV Core-core repulsion = 14145.557442 eV Total energy + Delta-G solvation = -2950.936981 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.41615 -38.72774 -38.10641 -37.53786 -34.94345 -34.01465 -33.15151 -29.43311 -27.90618 -27.27190 -25.21552 -23.76352 -22.75880 -19.43128 -18.84596 -18.44327 -18.23404 -16.90697 -16.32307 -16.14184 -16.08022 -15.62025 -15.25048 -14.93691 -14.77235 -14.05122 -13.54127 -13.41771 -13.19915 -12.89653 -12.72241 -12.64739 -12.46541 -12.12454 -11.93772 -11.54823 -11.29570 -11.01196 -10.65004 -10.54185 -10.52077 -9.62912 -8.22593 -6.34533 -0.42794 -0.36228 0.39584 1.44323 1.47985 1.55753 2.33177 2.42382 2.62216 3.05633 3.11856 3.24347 3.40277 3.71145 3.98016 4.16260 4.38712 4.50791 4.64379 4.83976 4.88513 4.97611 5.05673 5.14931 5.56904 5.60850 5.90602 5.93490 6.40505 6.76966 6.80046 6.96286 7.35125 8.89367 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.029734 B = 0.006091 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.463457 B = 4595.657351 C = 4999.845193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.491 5.491 3 C 0.230 3.770 4 C -0.524 4.524 5 H 0.076 0.924 6 C 0.002 3.998 7 N -0.936 5.936 8 Si 0.977 3.023 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.263 1.263 12 C 0.368 3.632 13 N -0.568 5.568 14 C 0.326 3.674 15 N -0.534 5.534 16 C 0.232 3.768 17 Cl 0.011 6.989 18 C -0.171 4.171 19 C 0.138 3.862 20 O -0.581 6.581 21 H 0.077 0.923 22 H 0.084 0.916 23 H 0.025 0.975 24 H -0.010 1.010 25 H -0.024 1.024 26 H 0.265 0.735 27 H 0.240 0.760 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.958 -14.858 -1.578 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.215 5.215 3 C 0.105 3.895 4 C -0.562 4.562 5 H 0.094 0.906 6 C -0.196 4.196 7 N -0.576 5.576 8 Si 0.801 3.199 9 H -0.189 1.189 10 H -0.213 1.213 11 H -0.188 1.188 12 C 0.132 3.868 13 N -0.287 5.287 14 C 0.037 3.963 15 N -0.251 5.251 16 C 0.059 3.941 17 Cl 0.040 6.960 18 C -0.178 4.178 19 C 0.059 3.941 20 O -0.390 6.390 21 H 0.096 0.904 22 H 0.102 0.898 23 H 0.044 0.956 24 H 0.008 0.992 25 H -0.006 1.006 26 H 0.074 0.926 27 H 0.256 0.744 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.929 -14.502 -2.655 14.772 hybrid contribution 0.148 0.640 0.948 1.153 sum -0.781 -13.862 -1.707 13.988 Atomic orbital electron populations 1.22262 0.84135 1.01621 1.02084 1.60251 1.10349 1.17041 1.33852 1.19286 0.92825 0.80855 0.96491 1.21335 1.35614 0.97524 1.01733 0.90577 1.25982 0.94690 0.97984 1.00938 1.70112 1.38993 1.11992 1.36499 0.85324 0.79019 0.76930 0.78670 1.18936 1.21278 1.18757 1.20600 0.88877 0.89314 0.88023 1.68758 1.26605 1.32259 1.01041 1.25547 0.86650 0.84566 0.99517 1.67964 1.15809 1.17117 1.24190 1.22042 0.91559 0.90982 0.89469 1.98403 1.63668 1.37238 1.96681 1.21118 1.01162 0.97271 0.98290 1.20656 0.86912 0.96986 0.89547 1.86510 1.36444 1.76642 1.39372 0.90441 0.89751 0.95646 0.99185 1.00573 0.92605 0.74374 0.90834 0.89954 0.74907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.70 9.13 127.69 1.17 2.87 16 2 N -0.49 -21.27 3.73 -730.58 -2.72 -23.99 16 3 C 0.23 12.44 4.54 85.56 0.39 12.83 16 4 C -0.52 -28.84 8.54 25.60 0.22 -28.62 16 5 H 0.08 3.94 7.10 -2.91 -0.02 3.92 16 6 C 0.00 0.14 5.46 84.66 0.46 0.60 16 7 N -0.94 -56.61 13.29 21.45 0.28 -56.32 16 8 Si 0.98 43.03 29.54 68.60 2.03 45.05 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 12 C 0.37 14.73 5.26 133.11 0.70 15.43 16 13 N -0.57 -21.82 9.95 -197.67 -1.97 -23.78 16 14 C 0.33 10.07 12.28 180.90 2.22 12.29 16 15 N -0.53 -16.82 10.43 -191.11 -1.99 -18.81 16 16 C 0.23 7.37 7.32 84.59 0.62 7.99 16 17 Cl 0.01 0.29 27.74 -2.72 -0.08 0.21 16 18 C -0.17 -5.95 5.56 -19.54 -0.11 -6.06 16 19 C 0.14 4.03 6.58 71.24 0.47 4.50 16 20 O -0.58 -18.16 13.64 -148.98 -2.03 -20.20 16 21 H 0.08 2.37 8.11 -2.39 -0.02 2.35 16 22 H 0.08 3.16 6.91 -2.38 -0.02 3.14 16 23 H 0.02 0.99 8.00 -2.39 -0.02 0.97 16 24 H -0.01 -0.61 8.05 -2.39 -0.02 -0.63 16 25 H -0.02 -1.41 8.11 -2.39 -0.02 -1.43 16 26 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 27 H 0.24 5.14 8.06 -2.91 -0.02 5.11 16 28 H 0.07 2.23 7.40 -2.39 -0.02 2.21 16 29 H 0.08 1.85 7.25 -2.38 -0.02 1.83 16 30 H 0.40 8.15 9.12 -74.05 -0.68 7.48 16 Total: -1.00 -69.42 280.73 0.16 -69.26 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 0.50 Total: 6.75 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 6.14 Total: 21.82 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -6.40 Total: -122.91 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -2.03 Total: -20.20 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -0.08 Total: 0.21 kcal Total: -69.42 0.16 -69.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124119343.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.257 kcal (2) G-P(sol) polarization free energy of solvation -69.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds