Wall clock time and date at job start Mon Mar 30 2020 04:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86804 * 119.99507 * 2 1 4 4 H 1.48509 * 109.46738 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47044 * 299.99028 * 3 2 1 6 6 H 1.48499 * 109.47639 * 59.99884 * 3 2 1 7 7 C 1.40239 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99570 * 180.02562 * 7 2 1 9 9 C 1.40125 * 120.00002 * 359.97438 * 7 2 1 10 10 N 1.33024 * 126.65598 * 359.96501 * 9 7 2 11 11 N 1.28569 * 109.35309 * 179.76003 * 10 9 7 12 12 C 1.31302 * 110.20615 * 0.44742 * 11 10 9 13 13 C 1.50706 * 126.07919 * 179.81823 * 12 11 10 14 14 H 1.09000 * 110.00910 * 333.31086 * 13 12 11 15 15 C 1.53878 * 110.02880 * 211.88469 * 13 12 11 16 16 C 1.54159 * 108.70279 * 193.52910 * 15 13 12 17 17 S 1.82920 * 105.08904 * 27.90416 * 16 15 13 18 18 O 1.42100 * 109.35312 * 244.48026 * 17 16 15 19 19 O 1.42098 * 109.35001 * 111.27816 * 17 16 15 20 20 C 1.55046 * 110.02772 * 94.69120 * 13 12 11 21 21 N 1.35299 * 107.84777 * 359.55513 * 12 11 10 22 22 H 0.96997 * 127.05042 * 180.22107 * 21 12 11 23 23 H 0.96994 * 120.00066 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.64338 * 313.38151 * 15 13 12 25 25 H 1.08996 * 109.64560 * 73.67299 * 15 13 12 26 26 H 1.09012 * 110.31779 * 269.00681 * 16 15 13 27 27 H 1.08992 * 110.40636 * 146.85831 * 16 15 13 28 28 H 1.09003 * 110.79001 * 279.99727 * 20 13 12 29 29 H 1.08995 * 110.79264 * 43.45682 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6179 0.0000 4 1 3.7009 1.3465 0.0006 5 1 1.8821 2.3964 -1.2126 6 1 1.8820 2.3966 1.2124 7 6 2.0081 -1.2145 0.0005 8 1 3.0881 -1.2144 0.0010 9 6 1.3076 -2.4280 0.0016 10 7 -0.0137 -2.5823 0.0029 11 7 -0.2963 -3.8365 -0.0015 12 6 0.8061 -4.5498 0.0039 13 6 0.8897 -6.0545 0.0052 14 1 -0.0054 -6.4773 0.4614 15 6 2.1411 -6.5122 0.7747 16 6 2.3874 -8.0042 0.4751 17 16 1.6806 -8.2787 -1.1896 18 8 0.5873 -9.1813 -1.0940 19 8 2.7318 -8.5320 -2.1115 20 6 1.0446 -6.5789 -1.4457 21 7 1.8539 -3.6937 0.0022 22 1 2.7963 -3.9235 0.0021 23 1 -0.4850 0.8400 -0.0004 24 1 3.0029 -5.9269 0.4541 25 1 1.9844 -6.3742 1.8445 26 1 1.8775 -8.6271 1.2102 27 1 3.4558 -8.2201 0.4731 28 1 0.0809 -6.5991 -1.9547 29 1 1.7637 -5.9762 -2.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134606748.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:36 Heat of formation + Delta-G solvation = -38.768620 kcal Electronic energy + Delta-G solvation = -16870.989914 eV Core-core repulsion = 13921.066101 eV Total energy + Delta-G solvation = -2949.923813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.062 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.74980 -38.11608 -37.72941 -37.02698 -35.50413 -33.69386 -31.77322 -30.34359 -27.74475 -26.03686 -23.47889 -22.39678 -21.37277 -19.79363 -19.37669 -18.11899 -17.61777 -17.35388 -16.69731 -16.46346 -15.95655 -15.50106 -15.18671 -14.89362 -14.74422 -13.48015 -13.28977 -13.27481 -13.16348 -13.10873 -12.95341 -12.93008 -12.82333 -12.05604 -11.88556 -11.82898 -11.58188 -11.38332 -11.21690 -10.95607 -10.29922 -9.60396 -8.50283 -6.59871 -0.91051 1.27276 1.44018 1.54399 1.60886 1.75896 2.20491 2.49131 2.63392 2.69516 3.06868 3.37695 3.41893 3.52032 3.73714 3.92111 4.00167 4.23691 4.56669 4.70053 4.85521 4.97827 5.00526 5.03615 5.28589 5.36320 5.56604 6.25729 6.38282 6.81740 7.21739 8.45997 8.80708 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.051268 B = 0.004773 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.019021 B = 5864.472413 C = 6038.544514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.029 3.971 3 Si 1.003 2.997 4 H -0.246 1.246 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.481 4.481 8 H 0.103 0.897 9 C 0.311 3.689 10 N -0.396 5.396 11 N -0.349 5.349 12 C 0.109 3.891 13 C 0.014 3.986 14 H 0.122 0.878 15 C -0.111 4.111 16 C -0.556 4.556 17 S 2.412 3.588 18 O -0.971 6.971 19 O -0.974 6.974 20 C -0.582 4.582 21 N -0.621 5.621 22 H 0.422 0.578 23 H 0.283 0.717 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.166 0.834 27 H 0.170 0.830 28 H 0.138 0.862 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.149 -11.012 2.071 14.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.191 4.191 3 Si 0.823 3.177 4 H -0.169 1.169 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.521 4.521 8 H 0.121 0.879 9 C 0.063 3.937 10 N -0.242 5.242 11 N -0.190 5.190 12 C -0.160 4.160 13 C -0.008 4.008 14 H 0.140 0.860 15 C -0.150 4.150 16 C -0.689 4.689 17 S 2.598 3.402 18 O -0.968 6.968 19 O -0.971 6.971 20 C -0.712 4.712 21 N -0.242 5.242 22 H 0.262 0.738 23 H 0.093 0.907 24 H 0.110 0.890 25 H 0.129 0.871 26 H 0.184 0.816 27 H 0.188 0.812 28 H 0.156 0.844 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.202 -11.396 1.452 13.559 hybrid contribution 1.589 1.230 0.229 2.022 sum 8.791 -10.167 1.681 13.545 Atomic orbital electron populations 1.70104 1.09297 1.29835 1.32316 1.26927 0.95598 1.04652 0.91954 0.84851 0.79290 0.75090 0.78487 1.16902 1.19577 1.19415 1.18729 0.94887 0.87649 1.50859 0.87905 1.21939 0.90033 0.85836 0.95887 1.75531 1.11004 1.05964 1.31668 1.73924 1.26114 1.00527 1.18426 1.23845 0.84840 0.94319 1.13017 1.20107 1.02218 0.85709 0.92783 0.86027 1.22010 0.96610 0.92529 1.03874 1.30296 1.15309 1.03639 1.19620 1.08306 0.75180 0.77041 0.79641 1.93572 1.54565 1.61256 1.87435 1.93559 1.56567 1.84424 1.62579 1.30802 1.13799 1.22813 1.03768 1.43726 1.09513 1.05883 1.65084 0.73789 0.90716 0.89021 0.87128 0.81630 0.81233 0.84403 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.04 11.95 21.88 0.26 -43.78 15 2 C 0.03 1.46 5.50 85.35 0.47 1.93 15 3 Si 1.00 36.93 29.56 68.60 2.03 38.96 15 4 H -0.25 -8.29 7.11 99.48 0.71 -7.59 15 5 H -0.27 -9.78 7.11 99.48 0.71 -9.07 15 6 H -0.27 -9.66 7.11 99.48 0.71 -8.95 15 7 C -0.48 -24.57 9.46 23.21 0.22 -24.35 15 8 H 0.10 4.62 7.85 -2.91 -0.02 4.59 15 9 C 0.31 16.53 7.73 133.51 1.03 17.56 15 10 N -0.40 -23.63 10.53 -55.14 -0.58 -24.21 15 11 N -0.35 -18.53 12.21 -49.88 -0.61 -19.14 15 12 C 0.11 4.44 7.05 137.81 0.97 5.42 15 13 C 0.01 0.37 3.10 -10.54 -0.03 0.34 15 14 H 0.12 2.98 8.14 -2.39 -0.02 2.96 15 15 C -0.11 -1.85 5.66 31.28 0.18 -1.68 15 16 C -0.56 -6.17 7.26 72.37 0.53 -5.64 15 17 S 2.41 46.70 6.11 -56.49 -0.34 46.36 15 18 O -0.97 -25.60 18.15 -127.49 -2.31 -27.91 15 19 O -0.97 -25.28 18.15 -127.49 -2.31 -27.59 15 20 C -0.58 -13.54 6.66 72.68 0.48 -13.06 15 21 N -0.62 -25.41 6.04 -183.58 -1.11 -26.52 15 22 H 0.42 13.19 7.88 -92.71 -0.73 12.46 15 23 H 0.28 14.25 8.29 -92.71 -0.77 13.48 15 24 H 0.09 1.37 6.93 -2.39 -0.02 1.35 15 25 H 0.11 1.69 8.14 -2.39 -0.02 1.67 15 26 H 0.17 1.15 8.14 -2.38 -0.02 1.13 15 27 H 0.17 1.04 8.14 -2.39 -0.02 1.02 15 28 H 0.14 3.31 8.14 -2.39 -0.02 3.29 15 29 H 0.14 3.14 8.10 -2.39 -0.02 3.12 15 Total: -1.00 -83.17 266.19 -0.67 -83.84 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.47 Total: 19.47 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 3.85 Total: -19.48 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -2.04 Total: -113.64 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -4.63 Total: -55.50 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Atomic # 16 Polarization: 46.70 SS G_CDS: -0.34 Total: 46.36 kcal Total: -83.17 -0.67 -83.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134606748.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.067 kcal (2) G-P(sol) polarization free energy of solvation -83.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds