Wall clock time and date at job start Mon Mar 30 2020 04:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31495 * 1 3 3 Si 1.86808 * 119.99670 * 2 1 4 4 H 1.48500 * 109.46706 * 269.99661 * 3 2 1 5 5 H 1.48499 * 109.47106 * 29.99240 * 3 2 1 6 6 H 1.48500 * 109.47315 * 149.99415 * 3 2 1 7 7 C 1.38721 * 120.00534 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99990 * 180.02562 * 7 2 1 9 9 O 1.34767 * 119.99728 * 0.02562 * 7 2 1 10 10 C 1.35272 * 116.99762 * 179.97438 * 9 7 2 11 11 C 1.39513 * 120.37336 * 90.00275 * 10 9 7 12 12 C 1.47344 * 119.81871 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99686 * 179.97438 * 12 11 10 14 14 O 1.21613 * 120.00063 * 359.97438 * 12 11 10 15 15 C 1.40616 * 120.35762 * 180.24979 * 11 10 9 16 16 C 1.35692 * 120.93888 * 359.44083 * 15 11 10 17 17 C 1.40822 * 120.24612 * 0.55842 * 16 15 11 18 18 C 1.40451 * 120.98458 * 179.74590 * 17 16 15 19 19 C 1.36221 * 119.72127 * 179.97438 * 18 17 16 20 20 C 1.39264 * 120.96914 * 0.02562 * 19 18 17 21 21 C 1.36233 * 120.90723 * 359.95284 * 20 19 18 22 22 C 1.40365 * 119.68940 * 0.05102 * 21 20 19 23 23 H 0.96999 * 120.00539 * 0.02562 * 1 2 3 24 24 H 0.97001 * 120.00485 * 0.02562 * 13 12 11 25 25 H 0.97005 * 119.99790 * 179.72385 * 13 12 11 26 26 H 1.08008 * 119.52726 * 179.72211 * 15 11 10 27 27 H 1.07999 * 119.87306 * 180.25750 * 16 15 11 28 28 H 1.07998 * 120.13852 * 359.97438 * 18 17 16 29 29 H 1.07997 * 119.50903 * 179.97438 * 19 18 17 30 30 H 1.07994 * 119.54325 * 179.97438 * 20 19 18 31 31 H 1.08003 * 120.15429 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2489 1.6179 0.0000 4 1 2.4964 2.0464 -1.4001 5 1 1.4462 2.6528 0.6999 6 1 3.5464 1.4405 0.7002 7 6 2.0087 -1.2013 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3349 -2.3684 0.0005 10 6 2.0717 -3.5029 0.0005 11 6 2.4559 -4.0945 1.2042 12 6 2.0574 -3.4800 2.4827 13 7 2.4261 -4.0487 3.6476 14 8 1.3957 -2.4596 2.4868 15 6 3.2263 -5.2708 1.2038 16 6 3.6010 -5.8590 0.0398 17 6 3.2312 -5.2895 -1.1939 18 6 3.6151 -5.8823 -2.4080 19 6 3.2427 -5.3097 -3.5866 20 6 2.4850 -4.1414 -3.6079 21 6 2.0945 -3.5394 -2.4499 22 6 2.4602 -4.1012 -1.2166 23 1 -0.4851 0.8400 -0.0004 24 1 2.9542 -4.8624 3.6444 25 1 2.1672 -3.6420 4.4893 26 1 3.5201 -5.7150 2.1435 27 1 4.1892 -6.7645 0.0596 28 1 4.2031 -6.7881 -2.4070 29 1 3.5401 -5.7682 -4.5181 30 1 2.2028 -3.7070 -4.5555 31 1 1.5067 -2.6338 -2.4806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136984726.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:54 Heat of formation + Delta-G solvation = -39.695242 kcal Electronic energy + Delta-G solvation = -18599.967734 eV Core-core repulsion = 15618.100132 eV Total energy + Delta-G solvation = -2981.867602 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.63748 -39.97686 -38.72052 -36.85792 -34.49204 -34.10181 -32.59987 -31.21761 -29.73718 -27.01304 -25.17855 -24.06106 -22.52412 -21.81189 -19.96540 -18.98166 -18.62895 -18.28193 -17.10011 -16.79695 -16.29380 -15.97253 -15.75943 -15.18816 -15.12066 -14.81545 -14.52519 -14.14970 -13.98792 -13.52818 -13.26275 -13.05825 -12.49808 -12.28570 -12.15855 -12.01315 -11.83540 -11.57023 -10.78103 -10.57680 -10.50962 -10.25624 -9.57184 -8.62740 -8.16741 -5.88843 -0.49475 -0.05870 1.04237 1.31059 1.38762 1.46897 1.69319 2.28429 2.53064 2.70283 3.16171 3.19976 3.66158 3.78777 4.00540 4.10859 4.17753 4.29993 4.45092 4.48922 4.57652 4.90205 5.07768 5.10623 5.20747 5.24556 5.31594 5.41727 5.61318 5.74070 5.94436 6.03799 6.12385 6.17146 6.64731 7.22947 7.57957 8.09443 9.06338 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.009542 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.429818 B = 2933.570027 C = 4237.905863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.031 4.031 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.339 4.339 8 H 0.056 0.944 9 O -0.256 6.256 10 C 0.165 3.835 11 C -0.214 4.214 12 C 0.540 3.460 13 N -0.834 5.834 14 O -0.555 6.555 15 C -0.074 4.074 16 C -0.126 4.126 17 C -0.036 4.036 18 C -0.113 4.113 19 C -0.100 4.100 20 C -0.130 4.130 21 C -0.105 4.105 22 C -0.117 4.117 23 H 0.259 0.741 24 H 0.414 0.586 25 H 0.407 0.593 26 H 0.168 0.832 27 H 0.181 0.819 28 H 0.174 0.826 29 H 0.165 0.835 30 H 0.141 0.859 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.895 -15.772 -1.654 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.225 4.225 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.416 4.416 8 H 0.074 0.926 9 O -0.169 6.169 10 C 0.118 3.882 11 C -0.218 4.218 12 C 0.327 3.673 13 N -0.402 5.402 14 O -0.432 6.432 15 C -0.092 4.092 16 C -0.144 4.144 17 C -0.036 4.036 18 C -0.131 4.131 19 C -0.117 4.117 20 C -0.147 4.147 21 C -0.123 4.123 22 C -0.117 4.117 23 H 0.068 0.932 24 H 0.247 0.753 25 H 0.238 0.762 26 H 0.185 0.815 27 H 0.198 0.802 28 H 0.191 0.809 29 H 0.183 0.817 30 H 0.158 0.842 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.133 -14.994 -1.825 18.765 hybrid contribution -0.188 1.234 0.652 1.408 sum 10.946 -13.760 -1.173 17.622 Atomic orbital electron populations 1.70171 1.07425 1.26927 1.52817 1.26089 0.96712 1.01442 0.98270 0.84874 0.77457 0.76632 0.78947 1.18577 1.20202 1.19104 1.20794 0.89200 0.81294 1.50280 0.92628 1.83598 1.30689 1.10574 1.91998 1.20008 0.87216 0.88820 0.92152 1.20577 1.07152 1.01535 0.92510 1.18497 0.79558 0.83675 0.85590 1.43424 1.58722 1.31228 1.06792 1.91032 1.39095 1.25222 1.87835 1.21060 0.95050 0.92154 1.00899 1.21277 1.01794 1.01635 0.89667 1.18526 0.95846 0.92509 0.96743 1.21462 1.00402 1.01116 0.90095 1.21336 0.96065 0.94376 0.99965 1.21146 0.99107 0.97049 0.97441 1.21063 0.99043 0.99252 0.92935 1.18834 1.01471 0.98212 0.93206 0.93203 0.75348 0.76170 0.81474 0.80177 0.80878 0.81742 0.84163 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -63.48 13.67 21.62 0.30 -63.19 16 2 C -0.03 -2.00 5.49 84.86 0.47 -1.54 16 3 Si 1.00 49.16 29.55 68.60 2.03 51.19 16 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.34 -21.76 8.75 67.94 0.59 -21.17 16 8 H 0.06 3.48 7.76 -2.91 -0.02 3.46 16 9 O -0.26 -16.38 7.37 4.22 0.03 -16.35 16 10 C 0.16 8.51 5.61 23.28 0.13 8.64 16 11 C -0.21 -9.11 5.89 -19.99 -0.12 -9.23 16 12 C 0.54 24.08 8.02 86.64 0.70 24.78 16 13 N -0.83 -23.68 8.82 -175.94 -1.55 -25.24 16 14 O -0.55 -32.85 15.13 17.06 0.26 -32.59 16 15 C -0.07 -2.07 9.43 22.26 0.21 -1.86 16 16 C -0.13 -3.12 9.72 22.31 0.22 -2.90 16 17 C -0.04 -1.13 5.74 -21.26 -0.12 -1.25 16 18 C -0.11 -2.58 9.76 22.34 0.22 -2.37 16 19 C -0.10 -2.30 9.95 22.05 0.22 -2.08 16 20 C -0.13 -4.01 9.95 22.05 0.22 -3.79 16 21 C -0.10 -4.47 9.56 22.32 0.21 -4.25 16 22 C -0.12 -5.06 5.75 -21.22 -0.12 -5.18 16 23 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16 24 H 0.41 7.64 6.81 -92.71 -0.63 7.01 16 25 H 0.41 10.37 8.93 -92.70 -0.83 9.55 16 26 H 0.17 2.87 6.34 -2.91 -0.02 2.85 16 27 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 28 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 29 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 31 H 0.09 4.79 7.61 -2.91 -0.02 4.77 16 Total: -1.00 -93.67 277.46 3.62 -90.05 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -0.27 Total: 18.32 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 2.82 Total: -22.19 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -1.26 Total: -88.42 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: 0.29 Total: -48.94 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.19 kcal Total: -93.67 3.62 -90.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136984726.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.355 kcal (2) G-P(sol) polarization free energy of solvation -93.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds