Wall clock time and date at job start Mon Mar 30 2020 04:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30930 * 1 3 3 Si 1.86804 * 120.00339 * 2 1 4 4 H 1.48500 * 109.47207 * 239.99937 * 3 2 1 5 5 H 1.48503 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47082 * 119.99524 * 3 2 1 7 7 C 1.39805 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99917 * 163.29053 * 7 2 1 9 9 C 1.41328 * 119.99932 * 343.29665 * 7 2 1 10 10 C 1.46619 * 120.90630 * 336.54255 * 9 7 2 11 11 N 1.30746 * 119.32190 * 179.97438 * 10 9 7 12 12 C 1.34262 * 121.48761 * 0.02562 * 11 10 9 13 13 C 1.38867 * 131.51262 * 179.97438 * 12 11 10 14 14 C 1.38966 * 107.66412 * 180.02562 * 13 12 11 15 15 C 1.50703 * 125.52944 * 180.02562 * 14 13 12 16 16 F 1.39901 * 109.46709 * 90.00175 * 15 14 13 17 17 F 1.39900 * 109.46977 * 209.99767 * 15 14 13 18 18 F 1.39899 * 109.47194 * 329.99943 * 15 14 13 19 19 N 1.31213 * 108.94410 * 359.97438 * 14 13 12 20 20 N 1.37065 * 121.65364 * 359.97438 * 12 11 10 21 21 C 1.36038 * 120.57688 * 0.02562 * 20 12 11 22 22 H 0.97006 * 119.99544 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.33873 * 0.25584 * 10 9 7 24 24 H 1.07998 * 126.16764 * 359.97438 * 13 12 11 25 25 H 1.08001 * 120.60934 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 3.0972 1.6963 -1.2125 5 1 1.2784 2.7465 -0.0006 6 1 3.0971 1.6964 1.2126 7 6 2.0083 -1.2107 0.0005 8 1 3.0542 -1.2306 -0.2684 9 6 1.3464 -2.4087 0.3529 10 6 0.1400 -2.3856 1.1858 11 7 -0.4478 -3.5124 1.4926 12 6 0.0285 -4.6917 1.0626 13 6 -0.4189 -5.9917 1.2583 14 6 0.4505 -6.8426 0.5866 15 6 0.3391 -8.3445 0.5331 16 9 -0.4409 -8.7152 -0.5675 17 9 1.6159 -8.9027 0.4090 18 9 -0.2612 -8.8098 1.7080 19 7 1.3837 -6.1261 0.0056 20 7 1.1521 -4.7720 0.2817 21 6 1.8235 -3.6464 -0.0827 22 1 -0.4850 0.8401 -0.0004 23 1 -0.2615 -1.4471 1.5384 24 1 -1.2858 -6.2880 1.8303 25 1 2.7091 -3.7091 -0.6976 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216414360.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:16 Heat of formation + Delta-G solvation = -53.719454 kcal Electronic energy + Delta-G solvation = -18190.244834 eV Core-core repulsion = 14562.372013 eV Total energy + Delta-G solvation = -3627.872821 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.047 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.80387 -47.34260 -47.29288 -41.06621 -37.03360 -34.33185 -32.88022 -30.56385 -28.53339 -27.13075 -24.83671 -23.16985 -21.83300 -20.54309 -18.44685 -18.18663 -17.92208 -17.55460 -16.10576 -15.76702 -15.55979 -14.91769 -14.32915 -14.16173 -14.10304 -13.74977 -13.52242 -13.47003 -13.45914 -12.62046 -12.39932 -11.88637 -11.85027 -11.69778 -11.56864 -11.33087 -10.81126 -10.39398 -10.30444 -9.74804 -8.82253 -8.44138 -7.51423 -7.19336 -4.96722 1.72414 1.90849 2.61487 2.70081 2.78596 2.81398 3.04633 3.35338 3.51736 4.00997 4.16314 4.39703 4.78227 4.82881 5.05766 5.50675 5.63380 6.07335 6.31048 6.47176 6.53278 6.62666 7.05194 7.12197 7.37056 7.68091 7.84980 8.12930 8.32451 8.74503 9.50938 Molecular weight = 257.05amu Principal moments of inertia in cm(-1) A = 0.057165 B = 0.004803 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.691800 B = 5828.509008 C = 6085.351821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.072 3.928 3 Si 0.930 3.070 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.415 4.415 8 H 0.097 0.903 9 C 0.045 3.955 10 C 0.191 3.809 11 N -0.479 5.479 12 C 0.206 3.794 13 C -0.242 4.242 14 C -0.034 4.034 15 C 0.561 3.439 16 F -0.175 7.175 17 F -0.173 7.173 18 F -0.171 7.171 19 N -0.314 5.314 20 N -0.218 5.218 21 C -0.095 4.095 22 H 0.297 0.703 23 H 0.184 0.816 24 H 0.151 0.849 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -2.284 1.349 2.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.150 4.150 3 Si 0.752 3.248 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.445 4.445 8 H 0.115 0.885 9 C 0.036 3.964 10 C 0.002 3.998 11 N -0.190 5.190 12 C -0.025 4.025 13 C -0.275 4.275 14 C -0.185 4.185 15 C 0.505 3.495 16 F -0.157 7.157 17 F -0.155 7.155 18 F -0.153 7.153 19 N -0.146 5.146 20 N 0.014 4.986 21 C -0.229 4.229 22 H 0.109 0.891 23 H 0.200 0.800 24 H 0.169 0.831 25 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.460 -2.630 1.096 2.886 hybrid contribution 0.300 0.609 -0.151 0.695 sum 0.760 -2.022 0.945 2.358 Atomic orbital electron populations 1.69687 1.07886 1.31528 1.31325 1.26140 0.95050 1.02471 0.91352 0.85963 0.79954 0.78174 0.80666 1.18355 1.19677 1.18127 1.19443 0.98269 0.89493 1.37284 0.88461 1.19301 0.92913 0.91751 0.92385 1.25314 0.90636 0.94799 0.89071 1.67894 1.30812 0.96474 1.23807 1.20167 0.89606 0.94063 0.98618 1.20199 1.05840 0.87981 1.13469 1.21213 0.99588 0.92365 1.05292 1.16885 0.73637 0.85458 0.73498 1.93202 1.75333 1.92660 1.54455 1.93191 1.39615 1.87034 1.95633 1.93180 1.83861 1.89867 1.48342 1.77529 1.23666 0.84558 1.28847 1.46315 1.17642 1.05126 1.29492 1.21757 1.06234 0.81062 1.13831 0.89099 0.79969 0.83104 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -16.14 10.87 55.54 0.60 -15.54 15 2 C 0.07 1.43 5.22 -17.35 -0.09 1.33 15 3 Si 0.93 14.92 29.59 -169.99 -5.03 9.89 15 4 H -0.26 -4.19 7.11 56.52 0.40 -3.79 15 5 H -0.27 -4.29 7.11 56.52 0.40 -3.89 15 6 H -0.26 -4.12 7.11 56.52 0.40 -3.72 15 7 C -0.42 -8.87 9.09 -37.82 -0.34 -9.22 15 8 H 0.10 1.94 7.90 -52.49 -0.41 1.53 15 9 C 0.04 1.02 5.71 -104.83 -0.60 0.42 15 10 C 0.19 4.32 10.16 -14.63 -0.15 4.17 15 11 N -0.48 -11.28 10.43 -10.52 -0.11 -11.39 15 12 C 0.21 4.94 7.88 -155.36 -1.22 3.72 15 13 C -0.24 -5.27 10.51 -39.08 -0.41 -5.68 15 14 C -0.03 -0.72 6.52 -82.59 -0.54 -1.26 15 15 C 0.56 10.16 3.54 36.01 0.13 10.29 15 16 F -0.18 -3.07 17.30 2.25 0.04 -3.03 15 17 F -0.17 -3.12 17.24 2.25 0.04 -3.08 15 18 F -0.17 -2.84 17.02 2.25 0.04 -2.80 15 19 N -0.31 -7.40 12.56 33.55 0.42 -6.98 15 20 N -0.22 -5.31 3.85 -11.29 -0.04 -5.35 15 21 C -0.09 -2.19 11.14 -15.17 -0.17 -2.36 15 22 H 0.30 5.50 8.30 -40.82 -0.34 5.17 15 23 H 0.18 3.90 6.25 -52.49 -0.33 3.58 15 24 H 0.15 2.89 8.06 -52.49 -0.42 2.46 15 25 H 0.15 3.23 8.06 -52.49 -0.42 2.81 15 LS Contribution 248.52 15.07 3.75 3.75 Total: -1.00 -24.54 248.52 -4.42 -28.96 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -0.72 Total: 4.14 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -3.40 Total: 1.42 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.87 Total: -39.25 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.12 Total: -8.90 kcal Atomic # 14 Polarization: 14.92 SS G_CDS: -5.03 Total: 9.89 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -24.54 -4.42 -28.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216414360.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.764 kcal (2) G-P(sol) polarization free energy of solvation -24.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds