Wall clock time and date at job start Mon Mar 30 2020 05:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47104 * 269.99787 * 3 2 1 5 5 H 1.48500 * 109.46857 * 30.00162 * 3 2 1 6 6 H 1.48500 * 109.46796 * 149.99759 * 3 2 1 7 7 C 1.37875 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99982 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47140 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99639 * 179.97438 * 10 9 7 12 12 S 1.71196 * 120.00353 * 355.00708 * 11 10 9 13 13 N 1.34786 * 119.99621 * 175.27686 * 11 10 9 14 14 C 1.46968 * 120.59432 * 4.64820 * 13 11 10 15 15 C 1.53814 * 108.39613 * 124.75296 * 14 13 11 16 16 N 1.46969 * 108.57526 * 49.64042 * 15 14 13 17 17 C 1.34778 * 120.59353 * 124.62108 * 16 15 14 18 18 O 1.21282 * 120.00071 * 0.02562 * 17 16 15 19 19 C 1.46957 * 118.81565 * 304.64411 * 16 15 14 20 20 C 1.46955 * 120.59375 * 184.92985 * 13 11 10 21 21 H 0.96998 * 120.00244 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.46776 * 59.99765 * 9 7 2 23 23 H 1.08999 * 109.46813 * 299.99833 * 9 7 2 24 24 H 0.96997 * 119.99706 * 359.97438 * 10 9 7 25 25 H 1.08993 * 109.61106 * 244.54400 * 14 13 11 26 26 H 1.09001 * 109.60678 * 5.05375 * 14 13 11 27 27 H 1.08995 * 109.74884 * 289.85433 * 15 14 13 28 28 H 1.08997 * 109.67336 * 169.38371 * 15 14 13 29 29 H 1.07996 * 120.00452 * 180.02562 * 17 16 15 30 30 H 1.09004 * 109.61207 * 295.48281 * 19 16 15 31 31 H 1.08998 * 109.75644 * 175.05151 * 19 16 15 32 32 H 1.09005 * 109.61379 * 354.94960 * 20 13 11 33 33 H 1.08999 * 109.61703 * 115.28778 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 16 0.0759 -5.1980 0.1307 13 7 2.6259 -5.9065 -0.0951 14 6 4.0742 -5.6570 -0.0987 15 6 4.7127 -6.4875 1.0276 16 7 4.2322 -7.8721 0.9184 17 6 5.1042 -8.8951 0.8213 18 8 6.2973 -8.6773 0.8241 19 6 2.7839 -8.1212 0.9163 20 6 2.1454 -7.2910 -0.2043 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5570 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 3.1567 -3.4354 0.0002 25 1 4.4942 -5.9544 -1.0595 26 1 4.2633 -4.5974 0.0738 27 1 4.4267 -6.0764 1.9957 28 1 5.7979 -6.4680 0.9279 29 1 4.7406 -9.9089 0.7411 30 1 2.3605 -7.8263 1.8765 31 1 2.5923 -9.1799 0.7417 32 1 1.0604 -7.3110 -0.1016 33 1 2.4286 -7.7012 -1.1736 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243053859.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:29 Heat of formation + Delta-G solvation = -27.601022 kcal Electronic energy + Delta-G solvation = -16991.468839 eV Core-core repulsion = 14177.862385 eV Total energy + Delta-G solvation = -2813.606455 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.37124 -39.87104 -37.79403 -35.66977 -34.43745 -32.77243 -30.32234 -28.48429 -26.02438 -25.20950 -24.00775 -23.05769 -21.07162 -19.73041 -18.57657 -18.09114 -17.53669 -17.09407 -16.60090 -16.43629 -16.28710 -15.80637 -15.22385 -15.07917 -14.91080 -14.33119 -14.17557 -13.54628 -12.99711 -12.95624 -12.92084 -12.66392 -12.50659 -12.43205 -12.23042 -12.01518 -11.54566 -11.01286 -10.78778 -10.20318 -9.52031 -8.93973 -8.55711 -8.29566 -6.49064 0.45326 0.88969 1.42684 1.44579 1.54639 1.59857 1.71408 2.09235 2.30638 2.49597 3.04707 3.53118 3.68682 3.81717 4.02645 4.15527 4.24070 4.32893 4.56627 4.66859 4.72231 4.92965 4.96795 5.12587 5.22407 5.29763 5.36836 5.59184 5.78390 5.90175 6.33772 6.43965 6.69580 7.08420 7.23072 8.80460 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.029794 B = 0.004967 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.560101 B = 5636.240582 C = 6466.494288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.566 4.566 8 H 0.081 0.919 9 C 0.277 3.723 10 N -0.651 5.651 11 C 0.579 3.421 12 S -0.755 6.755 13 N -0.568 5.568 14 C 0.085 3.915 15 C 0.099 3.901 16 N -0.620 5.620 17 C 0.499 3.501 18 O -0.605 6.605 19 C 0.109 3.891 20 C 0.084 3.916 21 H 0.270 0.730 22 H 0.009 0.991 23 H 0.012 0.988 24 H 0.405 0.595 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.107 0.893 29 H 0.185 0.815 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.117 0.883 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.405 -16.348 0.543 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.804 3.196 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.604 4.604 8 H 0.099 0.901 9 C 0.155 3.845 10 N -0.278 5.278 11 C 0.215 3.785 12 S -0.628 6.628 13 N -0.280 5.280 14 C -0.041 4.041 15 C -0.026 4.026 16 N -0.355 5.355 17 C 0.272 3.728 18 O -0.484 6.484 19 C -0.014 4.014 20 C -0.039 4.039 21 H 0.079 0.921 22 H 0.027 0.973 23 H 0.030 0.970 24 H 0.246 0.754 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.126 0.874 29 H 0.200 0.800 30 H 0.089 0.911 31 H 0.166 0.834 32 H 0.135 0.865 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.831 -16.266 0.615 19.552 hybrid contribution 0.927 1.440 -0.060 1.713 sum 11.758 -14.827 0.555 18.931 Atomic orbital electron populations 1.70137 1.08102 1.28681 1.48915 1.25935 0.95677 1.03503 0.93682 0.85214 0.78491 0.77296 0.78571 1.19649 1.20964 1.18076 1.21531 0.94145 0.90486 1.54275 0.90057 1.18933 0.87559 0.81469 0.96560 1.45614 1.11813 1.03613 1.66790 1.21768 0.93040 0.83179 0.80532 1.93331 0.99352 1.90932 1.79172 1.47311 1.05196 1.06138 1.69342 1.22595 0.78180 1.01707 1.01623 1.21905 1.00973 0.82031 0.97652 1.48770 1.08032 1.06842 1.71868 1.23661 0.85136 0.91048 0.73000 1.90706 1.19226 1.86769 1.51675 1.22200 0.77766 1.02956 0.98461 1.22738 1.03725 0.76754 1.00705 0.92103 0.97339 0.96962 0.75391 0.88010 0.88659 0.91103 0.87450 0.79981 0.91059 0.83363 0.86529 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.08 13.29 21.45 0.28 -53.79 16 2 C 0.01 0.71 5.46 84.65 0.46 1.17 16 3 Si 0.98 41.00 29.54 68.60 2.03 43.03 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 7 C -0.57 -29.32 9.28 25.60 0.24 -29.08 16 8 H 0.08 3.78 7.60 -2.91 -0.02 3.76 16 9 C 0.28 14.32 4.90 85.63 0.42 14.74 16 10 N -0.65 -25.45 5.46 -353.90 -1.93 -27.38 16 11 C 0.58 21.28 7.71 179.05 1.38 22.66 16 12 S -0.75 -35.15 27.01 -56.49 -1.53 -36.68 16 13 N -0.57 -14.15 2.94 -705.15 -2.07 -16.22 16 14 C 0.08 1.55 6.59 86.56 0.57 2.12 16 15 C 0.10 1.66 6.61 86.56 0.57 2.24 16 16 N -0.62 -8.60 2.95 -833.26 -2.46 -11.06 16 17 C 0.50 6.82 11.82 129.79 1.53 8.36 16 18 O -0.61 -14.71 16.58 -3.03 -0.05 -14.76 16 19 C 0.11 1.25 6.65 86.42 0.58 1.83 16 20 C 0.08 1.57 6.50 86.42 0.56 2.13 16 21 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 22 H 0.01 0.51 8.09 -2.39 -0.02 0.49 16 23 H 0.01 0.73 7.89 -2.39 -0.02 0.72 16 24 H 0.41 12.98 5.79 -92.71 -0.54 12.45 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.10 1.74 5.61 -2.39 -0.01 1.72 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.11 1.89 6.99 -2.39 -0.02 1.88 16 29 H 0.18 0.60 7.90 -2.91 -0.02 0.58 16 30 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.15 0.37 7.82 -2.39 -0.02 0.35 16 32 H 0.12 2.90 5.92 -3.96 -0.02 2.87 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -78.37 289.06 1.17 -77.20 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.58 Total: 13.49 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 6.31 Total: 26.17 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -6.18 Total: -108.46 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.05 Total: -14.76 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 16 Polarization: -35.15 SS G_CDS: -1.53 Total: -36.68 kcal Total: -78.37 1.17 -77.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243053859.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.603 kcal (2) G-P(sol) polarization free energy of solvation -78.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds