Wall clock time and date at job start Mon Mar 30 2020 05:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99570 * 2 1 4 4 H 1.48504 * 109.46963 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47062 * 299.99959 * 3 2 1 6 6 H 1.48500 * 109.47312 * 60.00243 * 3 2 1 7 7 C 1.37881 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47209 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47289 * 55.00003 * 10 9 7 12 12 N 1.46909 * 109.47087 * 295.00077 * 10 9 7 13 13 C 1.53007 * 109.47139 * 175.00278 * 10 9 7 14 14 H 1.08996 * 109.46835 * 59.99840 * 13 10 9 15 15 O 1.42904 * 109.46952 * 299.99969 * 13 10 9 16 16 C 1.50696 * 109.47042 * 180.02562 * 13 10 9 17 17 C 1.38230 * 119.98825 * 94.97703 * 16 13 10 18 18 C 1.38186 * 120.05312 * 179.97438 * 17 16 13 19 19 C 1.38503 * 120.02165 * 0.03870 * 18 17 16 20 20 F 1.35096 * 120.00694 * 180.02562 * 19 18 17 21 21 C 1.38390 * 119.97648 * 359.97438 * 19 18 17 22 22 C 1.38445 * 119.95081 * 359.97438 * 21 19 18 23 23 F 1.35101 * 120.01390 * 179.72859 * 22 21 19 24 24 H 0.96996 * 120.00800 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47090 * 59.99536 * 9 7 2 26 26 H 1.09001 * 109.47280 * 300.00382 * 9 7 2 27 27 H 1.00899 * 110.99548 * 176.04445 * 12 10 9 28 28 H 1.00899 * 110.99471 * 299.99688 * 12 10 9 29 29 H 0.96702 * 113.99743 * 299.99812 * 15 13 10 30 30 H 1.08000 * 119.97299 * 359.97438 * 17 16 13 31 31 H 1.07994 * 119.99243 * 180.02562 * 18 17 16 32 32 H 1.08000 * 120.02409 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 1 2.9302 -3.5555 0.8395 12 7 3.0076 -3.6532 -1.2577 13 6 1.4847 -4.9836 0.1238 14 1 0.8000 -5.0900 -0.7175 15 8 0.7433 -4.9921 1.3455 16 6 2.4641 -6.1289 0.1232 17 6 2.9139 -6.6540 1.3201 18 6 3.8116 -7.7046 1.3211 19 6 4.2622 -8.2321 0.1224 20 9 5.1394 -9.2596 0.1237 21 6 3.8128 -7.7071 -1.0765 22 6 2.9127 -6.6552 -1.0763 23 9 2.4773 -6.1380 -2.2460 24 1 -0.4851 0.8399 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 3.7153 -4.3724 -1.2561 28 1 2.3947 -3.7507 -2.0532 29 1 1.2900 -4.9011 2.1379 30 1 2.5635 -6.2428 2.2553 31 1 4.1620 -8.1144 2.2568 32 1 4.1634 -8.1181 -2.0117 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259304629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:42 Heat of formation + Delta-G solvation = -144.265225 kcal Electronic energy + Delta-G solvation = -19081.510525 eV Core-core repulsion = 15676.711993 eV Total energy + Delta-G solvation = -3404.798532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.17470 -50.04841 -40.70322 -38.39237 -36.02116 -34.45236 -32.07167 -31.72665 -30.15670 -27.60532 -25.37968 -24.18873 -22.89250 -21.65554 -19.42906 -18.57831 -18.29608 -18.11687 -17.39316 -16.91408 -16.75464 -16.51491 -16.36517 -16.13938 -15.56859 -15.49843 -15.17334 -14.25705 -14.21825 -13.89070 -13.65152 -13.26442 -13.13331 -12.93744 -12.51643 -12.48896 -12.45157 -12.08738 -11.76145 -11.18660 -11.10896 -10.49694 -10.16246 -9.79633 -9.27660 -8.10100 -6.16266 -0.18615 -0.06283 1.42280 1.43627 1.56650 2.24933 2.47762 2.76713 3.23163 3.26387 3.31880 3.43658 3.56301 3.84352 3.94310 4.02398 4.10101 4.27402 4.66129 4.72361 4.75005 4.83733 4.95765 5.04945 5.18635 5.53587 5.66668 5.69682 5.88374 6.28199 6.47085 6.68416 6.74419 6.98778 7.50260 9.01894 Molecular weight = 257.10amu Principal moments of inertia in cm(-1) A = 0.035408 B = 0.004929 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.582297 B = 5679.685823 C = 5789.027970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.006 4.006 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.040 3.960 10 C 0.091 3.909 11 H 0.076 0.924 12 N -0.826 5.826 13 C 0.125 3.875 14 H 0.085 0.915 15 O -0.557 6.557 16 C -0.164 4.164 17 C -0.053 4.053 18 C -0.145 4.145 19 C 0.119 3.881 20 F -0.133 7.133 21 C -0.186 4.186 22 C 0.116 3.884 23 F -0.137 7.137 24 H 0.259 0.741 25 H -0.017 1.017 26 H 0.007 0.993 27 H 0.333 0.667 28 H 0.338 0.662 29 H 0.387 0.613 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.755 -17.919 2.373 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.202 4.202 3 Si 0.786 3.214 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.003 3.997 10 C -0.022 4.022 11 H 0.094 0.906 12 N -0.357 5.357 13 C 0.063 3.937 14 H 0.103 0.897 15 O -0.364 6.364 16 C -0.165 4.165 17 C -0.071 4.071 18 C -0.164 4.164 19 C 0.100 3.900 20 F -0.112 7.112 21 C -0.205 4.205 22 C 0.097 3.903 23 F -0.116 7.116 24 H 0.068 0.932 25 H 0.001 0.999 26 H 0.025 0.975 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.238 0.762 30 H 0.185 0.815 31 H 0.191 0.809 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.362 -17.157 2.146 19.206 hybrid contribution 0.110 0.023 -0.380 0.396 sum 8.472 -17.133 1.766 19.195 Atomic orbital electron populations 1.70113 1.07629 1.27172 1.53192 1.25891 0.95619 1.02983 0.95722 0.85470 0.79083 0.79491 0.77361 1.18914 1.21085 1.20608 1.21520 0.93341 0.91530 1.47845 0.92278 1.18929 0.93296 0.92440 0.95055 1.22030 0.94653 0.92383 0.93084 0.90591 1.58662 1.18227 1.55126 1.03719 1.21586 0.91713 0.92082 0.88293 0.89706 1.86616 1.37937 1.95985 1.15838 1.20805 1.01840 1.00335 0.93566 1.20939 0.94175 0.94279 0.97718 1.21476 0.98901 0.97746 0.98272 1.17412 0.91191 0.87381 0.94030 1.91531 1.66261 1.56011 1.97371 1.21122 1.00732 0.98523 1.00142 1.17218 0.97272 0.95038 0.80812 1.91509 1.88208 1.85698 1.46154 0.93236 0.99895 0.97488 0.85380 0.84907 0.76240 0.81530 0.80929 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.00 13.29 21.45 0.28 -57.71 16 2 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 3 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.50 -28.57 8.84 25.60 0.23 -28.34 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.04 2.07 4.54 29.84 0.14 2.21 16 10 C 0.09 3.49 2.51 44.91 0.11 3.60 16 11 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 12 N -0.83 -30.38 8.22 -168.66 -1.39 -31.77 16 13 C 0.13 4.02 2.75 29.85 0.08 4.10 16 14 H 0.09 3.05 7.79 -2.39 -0.02 3.03 16 15 O -0.56 -17.60 12.23 -148.98 -1.82 -19.43 16 16 C -0.16 -4.08 4.68 -19.82 -0.09 -4.17 16 17 C -0.05 -0.99 9.30 22.26 0.21 -0.78 16 18 C -0.15 -2.30 10.03 22.32 0.22 -2.08 16 19 C 0.12 2.20 7.30 22.37 0.16 2.37 16 20 F -0.13 -2.50 17.27 44.97 0.78 -1.72 16 21 C -0.19 -3.71 10.01 22.36 0.22 -3.49 16 22 C 0.12 2.82 5.89 22.37 0.13 2.95 16 23 F -0.14 -3.72 14.68 44.97 0.66 -3.06 16 24 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 25 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 26 H 0.01 0.38 7.54 -2.39 -0.02 0.36 16 27 H 0.33 10.41 6.70 -89.69 -0.60 9.80 16 28 H 0.34 12.55 8.20 -89.70 -0.74 11.81 16 29 H 0.39 8.85 7.32 -74.06 -0.54 8.31 16 30 H 0.17 2.25 6.40 -2.91 -0.02 2.23 16 31 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -68.26 280.25 1.72 -66.54 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.69 Total: 23.15 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 1.88 Total: -23.51 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -1.10 Total: -89.48 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.82 Total: -19.43 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 1.44 Total: -4.79 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -68.26 1.72 -66.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259304629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.723 kcal (2) G-P(sol) polarization free energy of solvation -68.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds