Wall clock time and date at job start Mon Mar 30 2020 04:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99857 * 2 1 4 4 H 1.48495 * 109.47025 * 269.99709 * 3 2 1 5 5 H 1.48490 * 109.47160 * 30.00108 * 3 2 1 6 6 H 1.48506 * 109.46938 * 150.00148 * 3 2 1 7 7 C 1.37877 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99895 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47110 * 60.00552 * 9 7 2 11 11 N 1.46898 * 109.47329 * 300.00288 * 9 7 2 12 12 C 1.50700 * 109.46995 * 180.02562 * 9 7 2 13 13 C 1.37759 * 119.90397 * 100.00169 * 12 9 7 14 14 C 1.39743 * 119.90398 * 179.97438 * 13 12 9 15 15 C 1.47441 * 120.14927 * 179.97438 * 14 13 12 16 16 O 1.21511 * 119.99934 * 180.02562 * 15 14 13 17 17 O 1.34750 * 119.99892 * 0.02562 * 15 14 13 18 18 C 1.40005 * 119.70667 * 0.02562 * 14 13 12 19 19 F 1.35097 * 120.09705 * 179.72588 * 18 14 13 20 20 C 1.38137 * 119.80189 * 0.02562 * 18 14 13 21 21 C 1.38550 * 120.09529 * 359.97438 * 20 18 14 22 22 F 1.35099 * 119.85058 * 180.02562 * 21 20 18 23 23 H 0.97004 * 119.99967 * 359.97438 * 1 2 3 24 24 H 1.00903 * 110.99602 * 300.00002 * 11 9 7 25 25 H 1.00898 * 111.00225 * 63.95250 * 11 9 7 26 26 H 1.08002 * 120.04237 * 0.02562 * 13 12 9 27 27 H 0.96689 * 116.99908 * 179.97438 * 17 15 14 28 28 H 1.07998 * 119.95345 * 179.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1991 12 6 2.2303 -3.6446 -0.0005 13 6 2.5190 -4.3014 1.1755 14 6 3.4266 -5.3638 1.1754 15 6 3.7400 -6.0702 2.4311 16 8 4.5300 -6.9934 2.4279 17 8 3.1502 -5.6920 3.5821 18 6 4.0380 -5.7539 -0.0222 19 9 4.9209 -6.7765 -0.0303 20 6 3.7405 -5.0862 -1.1942 21 6 2.8393 -4.0338 -1.1847 22 9 2.5515 -3.3845 -2.3339 23 1 -0.4850 0.8401 0.0004 24 1 0.9652 -2.5260 2.0381 25 1 -0.3005 -1.8577 1.1911 26 1 2.0437 -3.9960 2.0960 27 1 3.3869 -6.1852 4.3793 28 1 4.2110 -5.3848 -2.1193 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260077035.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:05 Heat of formation + Delta-G solvation = -158.565820 kcal Electronic energy + Delta-G solvation = -18853.472466 eV Core-core repulsion = 15312.220719 eV Total energy + Delta-G solvation = -3541.251747 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.78323 -48.53323 -40.11662 -38.38681 -35.97411 -34.84434 -31.80962 -31.01269 -29.27503 -26.19650 -24.34271 -23.48554 -21.89856 -20.04928 -18.08602 -17.94591 -16.88640 -16.69864 -16.68710 -15.90288 -15.45704 -15.18457 -14.84644 -14.62817 -14.29072 -14.07698 -13.90921 -12.99106 -12.77594 -12.66286 -12.10031 -11.80359 -11.47952 -11.33159 -11.19753 -10.97860 -10.85187 -10.51039 -10.17509 -9.90782 -8.87241 -8.80957 -8.22457 -7.41592 -6.23941 -4.40791 0.68345 1.34766 2.59875 3.04845 3.16327 3.23943 3.26988 3.75002 4.07171 4.23835 4.59378 4.83441 4.99490 5.13800 5.21014 5.39669 5.93505 6.02443 6.16130 6.21788 6.43331 6.53588 6.64190 6.99378 7.37312 7.60056 7.86138 7.96157 8.46342 8.72627 8.90770 9.31436 10.75064 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.024932 B = 0.006730 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.788524 B = 4159.584764 C = 4676.434769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.071 3.929 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.244 3.756 10 H 0.059 0.941 11 N -0.850 5.850 12 C -0.088 4.088 13 C 0.001 3.999 14 C -0.187 4.187 15 C 0.534 3.466 16 O -0.514 6.514 17 O -0.506 6.506 18 C 0.167 3.833 19 F -0.118 7.118 20 C -0.212 4.212 21 C 0.169 3.831 22 F -0.116 7.116 23 H 0.268 0.732 24 H 0.313 0.687 25 H 0.361 0.639 26 H 0.159 0.841 27 H 0.412 0.588 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.333 -7.849 2.690 9.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.133 4.133 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.075 0.925 9 C 0.133 3.867 10 H 0.077 0.923 11 N -0.381 5.381 12 C -0.090 4.090 13 C -0.017 4.017 14 C -0.189 4.189 15 C 0.379 3.621 16 O -0.404 6.404 17 O -0.317 6.317 18 C 0.147 3.853 19 F -0.096 7.096 20 C -0.231 4.231 21 C 0.148 3.852 22 F -0.094 7.094 23 H 0.078 0.922 24 H 0.123 0.877 25 H 0.178 0.822 26 H 0.177 0.823 27 H 0.270 0.730 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.067 -8.488 2.009 9.624 hybrid contribution 1.178 1.547 0.373 1.980 sum 5.245 -6.941 2.381 9.020 Atomic orbital electron populations 1.69721 1.05875 1.27565 1.49679 1.24985 0.94972 0.99416 0.93918 0.86457 0.79797 0.82597 0.78410 1.20374 1.21014 1.19778 1.21692 0.93600 0.90594 1.52954 0.92470 1.17928 0.88815 0.87279 0.92630 0.92318 1.59561 1.18375 1.56415 1.03753 1.20728 0.99165 0.98618 0.90503 1.21128 0.91286 0.89823 0.99478 1.19064 1.06665 1.03221 0.89965 1.20520 0.77146 0.80676 0.83782 1.90920 1.33746 1.28851 1.86876 1.84603 1.66726 1.61734 1.18661 1.17051 0.89487 0.86434 0.92305 1.91565 1.65201 1.55805 1.97071 1.20830 1.04032 0.99556 0.98714 1.17485 0.94616 0.90489 0.82569 1.91551 1.91497 1.79534 1.46855 0.92196 0.87659 0.82165 0.82339 0.72998 0.83174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.19 11.54 55.43 0.64 -22.55 15 2 C 0.07 1.80 5.38 -17.82 -0.10 1.70 15 3 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 15 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 7 C -0.55 -13.83 8.70 -34.44 -0.30 -14.13 15 8 H 0.06 1.46 7.74 -52.48 -0.41 1.06 15 9 C 0.24 5.60 2.66 -70.02 -0.19 5.41 15 10 H 0.06 1.51 7.94 -51.93 -0.41 1.10 15 11 N -0.85 -18.31 8.66 -6.65 -0.06 -18.36 15 12 C -0.09 -1.74 5.03 -104.61 -0.53 -2.27 15 13 C 0.00 0.02 8.81 -39.19 -0.35 -0.32 15 14 C -0.19 -3.10 5.88 -104.93 -0.62 -3.72 15 15 C 0.53 8.28 8.26 34.48 0.28 8.57 15 16 O -0.51 -9.06 16.12 -19.27 -0.31 -9.37 15 17 O -0.51 -6.08 12.68 -40.63 -0.51 -6.60 15 18 C 0.17 2.76 7.28 -38.96 -0.28 2.47 15 19 F -0.12 -1.99 15.55 2.25 0.04 -1.96 15 20 C -0.21 -3.34 9.99 -39.50 -0.39 -3.73 15 21 C 0.17 3.10 7.24 -39.28 -0.28 2.82 15 22 F -0.12 -2.27 16.64 2.25 0.04 -2.23 15 23 H 0.27 6.70 8.31 -40.82 -0.34 6.36 15 24 H 0.31 6.28 7.27 -39.29 -0.29 5.99 15 25 H 0.36 8.46 7.08 -39.29 -0.28 8.18 15 26 H 0.16 2.64 5.78 -52.49 -0.30 2.33 15 27 H 0.41 2.81 9.11 45.56 0.42 3.23 15 28 H 0.15 1.95 8.06 -52.49 -0.42 1.53 15 LS Contribution 262.56 15.07 3.96 3.96 Total: -1.00 -28.08 262.56 -4.81 -32.89 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -0.83 Total: 12.36 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.75 Total: -3.20 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.58 Total: -40.91 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.83 Total: -15.97 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.07 Total: -4.19 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.08 -4.81 -32.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077035.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.673 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds